mRNA_E_fasciculatus_S2_contig8593.16714.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8593.16714.1
Unique NamemRNA_E_fasciculatus_S2_contig8593.16714.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8593.16714.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8593contigE_fasciculatus_S2_contig8593:2210..4653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1538
Hectar predicted targeting categoryother localisation
Exons4
Cds size708
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8593.16714.1prot_E_fasciculatus_S2_contig8593.16714.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8593 2875..4269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842517.2171574-UTR-E_fasciculatus_S2_contig8593:2209..28741696842517.2171574-UTR-E_fasciculatus_S2_contig8593:2209..2874Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8593 2210..2874 -
1696842517.2727704-UTR-E_fasciculatus_S2_contig8593:4269..42711696842517.2727704-UTR-E_fasciculatus_S2_contig8593:4269..4271Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8593 4270..4271 -
1696842517.2894707-UTR-E_fasciculatus_S2_contig8593:4490..46531696842517.2894707-UTR-E_fasciculatus_S2_contig8593:4490..4653Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8593 4491..4653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842517.229125-CDS-E_fasciculatus_S2_contig8593:2874..32131696842517.229125-CDS-E_fasciculatus_S2_contig8593:2874..3213Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8593 2875..3213 -
1696842517.2408926-CDS-E_fasciculatus_S2_contig8593:3506..37621696842517.2408926-CDS-E_fasciculatus_S2_contig8593:3506..3762Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8593 3507..3762 -
1696842517.2523396-CDS-E_fasciculatus_S2_contig8593:4156..42691696842517.2523396-CDS-E_fasciculatus_S2_contig8593:4156..4269Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8593 4157..4269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8593.16714.1

>prot_E_fasciculatus_S2_contig8593.16714.1 ID=prot_E_fasciculatus_S2_contig8593.16714.1|Name=mRNA_E_fasciculatus_S2_contig8593.16714.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=236bp
MTGYVQKDEGRSWYQFDSVGLTQDFCSVALANYRRKAAGVLNDNAKIQIN
KKSFWPVMINLSQKEYFPLKMSGAQLTLYAIQSGEYGPCYSWISSTSSQG
IPVEKAVSFWRCWTAHAEVHKQDVFFDTRKSGTWTTPPTTTWPLPRHSCS
PRDSATFCLLSPTPSVSTFRVKRIACRSETFTRPFAKALSFGTSVASATV
AMRKAPSPKATMLCSFFLYLYPLSVYFLVSAVGLV*
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mRNA from alignment at E_fasciculatus_S2_contig8593:2210..4653-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8593.16714.1 ID=mRNA_E_fasciculatus_S2_contig8593.16714.1|Name=mRNA_E_fasciculatus_S2_contig8593.16714.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2444bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8593:2210..4653- (Ectocarpus fasciculatus EfasUO2)
GCCTGTGAGGTGCGGGCGCCGCAACTGGCTTTCCCTGTTCGATGAAAGCG
CTGTAGACGCGATTGCTCGCTCTGGTGACGATGATGACGGAACCGAACCA
TTTCTTAGCGGTAGCTTCCTCGACAACCGTTCCATCAGCGAGTTGACAGT
CTACTCCTATCAGGTGAAAATAATTTTTCTTTGGCATTTTACCTCCGCGC
CGGCGAGCTTCTGGCGCATAGGCTCTTGCCACAAGTCCATTTTCACTTAT
TTTGATGTAGTGCGCGTTCGATTCCTTGTCGTTCCTCCACGTCATTTTTT
CTATTCTCTTTCTTCTAAGTCGATAATCTCCTAACTGCTGGTGTGCATGT
ATCTTTCCTGCATTTCCTCTTGCATGTTGCAGTCATGACTGGATATGTCC
AGAAAGATGAAGGTCGCTCTTGGTATCAGTTCGACAGTGTCGGGCTCACA
CAAGATTTCTGCAGCGTGGCGCTTGCGAACTACCGCCGGAAAGCAGCGTG
AGTAGTAGACTTCATTTCTTTACATTTCATTTTTTTTCCCGTTCACATTC
TGTTTTCCTTGTATCCCGTCCTGATTCTACGCCCTCCTCTTGTCTCATTT
ATTGTTTTGGTTGAGCTAGTCGTCATATCTGCGGTTGTCGTTCCGGTGTA
AATGTCTTCGTGTTAGTCGTTACCGTGCCCGTTTTTCTGTCGCGCTAACA
ACTTGAATTTCGTTTTTTTGTCCGTTCACATTATTTTTTCGTGGTATCCG
GTCCTGTTTCAATGACTTTATCGTCGTCCCGTTCGTGAGTGTGTCCTGCC
CTACCATGCTCTATTGCATCATCACCTTATCGTTATGTTGATGTTAAACC
TTACGGCAACATGTCTTCCTTTTCCGTTTCCCATTTTCCAGGGGCGTTCT
GAACGACAATGCCAAGATCCAGATCAACAAGAAATCTTTCTGGCCTGTCA
TGATCAACCTCTCTCAGAAGGAGTACTTCCCTCTGAAGATGTCTGGTGCT
CAACTCACCCTCTACGCGATCCAGTCCGGCGAGTACGGGCCGTGCTACTC
GTGGATCTCCTCCACCAGCTCTCAGGGTATTCCGGTGGAGAAGGCCGTCT
CCTTCTGGCGTTGCTGGACAGCTCACGCCGAAGTGCATAAGCAAGACGTG
AGCAATATTTCATGTTTTTGCTATTTTTTTCCCTTCCCCATTGATTATTT
TGTTTGCCGTATCTGGTCCTTTGATAGTACGTGCCTGCTCTTCTCTATCG
TGTAAATCGTTTTTTTTCGGTGAAAACGTCAGCATCAAGTGCTTTGATCT
TTGACGGGTTGTTTCCTTTATCGTTGTAAAATAGTTTCAACAGAGGCTCG
TTCGTTCGTCTTGCGCCCGTTCTCTCTAATTTTTCCTCGCCTTTTGTCCA
CGTCATACGTCTTATCCTGGTTTCGTGACGCCCGTGCCAGGTCTTCTTCG
ACACACGCAAGAGCGGGACTTGGACGACGCCGCCTACGACGACATGGCCG
CTTCCCAGGCACAGTTGTTCGCCTCGCGACAGCGCGACCTTCTGTCTGCT
CTCACCGACACCGAGCGTGTCAACCTTTCGCGTCAAGCGGATAGCTTGCC
GGTCGGAAACCTTCACGAGGCCGTTCGCGAAGGCCTTATCCTTCGGAACA
TCGGTCGCGAGCGCGACAGTAGCGATGAGGAAGGCTCCCTCGCCGAAAGC
GACGATGCTCTGTAGTTTCTTCCTCTACCTGTATCCCTTGTCCGTATATT
TCCTTGTGTCTGCTGTGGGGTTAGTATAATTTTCCTTGTTCGTGCCGTGT
GGTTAATTTATTGTAGTACTTGCTGTTCGTGCGATTCTAAATATATCGTC
CTGCTATGTTCTTGTCTAAAGAGTATTTCGGTGCCTGCGTCTCTTACCGT
TTTTCGCGAAGCAATTCATCTTTTTGTACACTACCGGTTTTTGCTTTTCT
TTTCCGTCGATCGTTGTAGCCTATCTTTCTGAGTTCGTTTTGTCGGCAGT
CGAATTTTGTACTTTACGAAGTGGTGTTCACTGTGTGCGTCTTTTTCCTG
CATTATGAGTAGACAGTTTACGACTGTTGCTGGCGTTCTTTTGTGTAGAG
TTGACGTAGCGTTTCCTTAGTTAGGGAGATTTCTAACGTGTGGTATCGTT
CGGTGCGTTGTACTTACTTCCTGGACGGTGTGTTTTGTCGGCTTATCATT
CGTTTGGCGACACATTAGTGTTCATGTATCTGCATGATTTTACTCTGCTA
TTGCTGCTAGACGTAGCCAAGTCCTAGGTACATAAAGACGTACGGTCGTG
TGCAGCCTTTTCATGTGCTGCTTGCTTGAGACGGAGACAGGTGTGCTCAA
ATCTGAGCTGTGTATGATGGACGTATTAAATGCAATGTTAGTTCAGGTTG
AAAAATATCCAGTTTGTACAAGCAAACCGCGAAATATTTTGTAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8593:2210..4653-

>mRNA_E_fasciculatus_S2_contig8593.16714.1 ID=mRNA_E_fasciculatus_S2_contig8593.16714.1|Name=mRNA_E_fasciculatus_S2_contig8593.16714.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=708bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8593:2210..4653- (Ectocarpus fasciculatus EfasUO2)
ATGACTGGATATGTCCAGAAAGATGAAGGTCGCTCTTGGTATCAGTTCGA
CAGTGTCGGGCTCACACAAGATTTCTGCAGCGTGGCGCTTGCGAACTACC
GCCGGAAAGCAGCGGGCGTTCTGAACGACAATGCCAAGATCCAGATCAAC
AAGAAATCTTTCTGGCCTGTCATGATCAACCTCTCTCAGAAGGAGTACTT
CCCTCTGAAGATGTCTGGTGCTCAACTCACCCTCTACGCGATCCAGTCCG
GCGAGTACGGGCCGTGCTACTCGTGGATCTCCTCCACCAGCTCTCAGGGT
ATTCCGGTGGAGAAGGCCGTCTCCTTCTGGCGTTGCTGGACAGCTCACGC
CGAAGTGCATAAGCAAGACGTCTTCTTCGACACACGCAAGAGCGGGACTT
GGACGACGCCGCCTACGACGACATGGCCGCTTCCCAGGCACAGTTGTTCG
CCTCGCGACAGCGCGACCTTCTGTCTGCTCTCACCGACACCGAGCGTGTC
AACCTTTCGCGTCAAGCGGATAGCTTGCCGGTCGGAAACCTTCACGAGGC
CGTTCGCGAAGGCCTTATCCTTCGGAACATCGGTCGCGAGCGCGACAGTA
GCGATGAGGAAGGCTCCCTCGCCGAAAGCGACGATGCTCTGTAGTTTCTT
CCTCTACCTGTATCCCTTGTCCGTATATTTCCTTGTGTCTGCTGTGGGGT
TAGTATAA
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