mRNA_E_fasciculatus_S2_contig8590.16711.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8590.16711.1
Unique NamemRNA_E_fasciculatus_S2_contig8590.16711.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 8.800e-141
Identity = 215/387 (55.56%), Postives = 265/387 (68.48%), Query Frame = 1
Query:   25 PRQVQGGQATGDVRDDIEERIRSTQRSHEDDDQQLDVEDLGFLVEMWRKGDLIDGPPEGFGSGLGGIFNGLFYGYLRIANAPPYTAGTRDDDKAPDWSKGHLRQEYSTRVLRVCMNAHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRNTTMGGLCHSERKDARGGTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHGKFFLLPAAGTMRSVNRRDVGPAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHMFVTERLVESCAWHPVFN 1185
            P++ Q  Q   + R DI+ RI  +Q         LD     FLV++W KG+LIDG  EGFG+G  G  NGLF GYL +ANAPPY  G RDD     WSKG  R EY+    + C+ AHFPV+FEGD    SVM   C+  L  N+  +G +G R GT MF +S  FV+ W EG +    L++AF    TWT QNFE+D  VD +S+++I+C  AS+LVRNT MGGLCH +R   RGG LTG   V GK+WSGSEVTAFAM +  VT++H D QMVHG+   LPAAGTMRSVNRR  GPAKRA++ CAHDMD+VVD+L LD  K SS+QY GAIV LEGLA++L  + IRFVV+++PE+CSYAIP +C HMFVT RLVESCAWHP+ N
Sbjct:  238 PQKRQKEQPNENRRSDIKRRILRSQEGG------LDNYICEFLVDIWEKGELIDGT-EGFGNGADGFDNGLFCGYLDMANAPPYVPGRRDDPTVAFWSKGTDRLEYTEHAFKACLKAHFPVIFEGDDTYRSVMGTACKSALARNLTRIGGLGGRNGTSMFGVSPSFVESWNEGVIDGDELKKAFGTNPTWTTQNFEEDDKVDVLSFNTIECVGASDLVRNTRMGGLCHPDRPPTRGGVLTGTTSVRGKSWSGSEVTAFAMRTGGVTHSHVDPQMVHGEHLYLPAAGTMRSVNRRGSGPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPILN 617          
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 3.210e-118
Identity = 193/386 (50.00%), Postives = 244/386 (63.21%), Query Frame = 1
Query:   46 QATGDVRDDIEERIRSTQRSHEDDDQQLDVEDLGFLVEMWRKGDLIDGPPEGFGSGLGGIFNGLFYGYLRIANAPPYTAGTRDDDKAPDWSKGHLRQEYSTRVLRVCMNAHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRNTTMGGLCHSERKDARG-----GTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHGKFFLLPAAGTMRSVNRRDVGPAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHMFVTERLVESCAWHPVFNF 1188
            +A  + RD++  RI   Q       Q L  E    LV+MW KG+L DG  +  G G G + NGLFYG+L   NAPPY    R+DD    WSKG  R+ +S RV R C+ A FPV+ EGD  + SVM A C+  + ++I  L N+G R GT MF LS +FV  W EG+VG  +LR+AF GK+TWTIQNFE++  VDA SY +I+C  A+ +VR T MG LC+ +  D  G     G LT  + +    W+GSEVTAFA    +VT+ H D   V+ K   LPAAG MRSVNR D GPAKRA+V CAHDMD+VV + KLD RK  + QY GA+  L  LA++L  + I FVVI++PE CSYAIP KC HM VT RLVE+CAW+P   F
Sbjct:   14 EANEERRDNVRARILRCQHG-----QALAKETCDILVDMWHKGELKDGT-DSLGDGFGCLDNGLFYGFLSRDNAPPYNVRRREDDGDSFWSKGEARRRHSDRVFRACLTAGFPVLIEGDI-TRSVMGAVCKAAVGMHISKLRNLGVRRGTSMFSLSEEFVDCWVEGNVGDNMLRDAFGGKTTWTIQNFEENQRVDACSYQTIECAAATGIVRKTRMGALCYPDTADTAGTDNTGGELTKPVSIGEVLWAGSEVTAFATRRGSVTHIHVDALEVNEKPLFLPAAGAMRSVNRGDRGPAKRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWNPALPF 392          
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.510e-58
Identity = 133/328 (40.55%), Postives = 169/328 (51.52%), Query Frame = 1
Query:  220 GIFNGLFYGYLRIANAPPYTAGTRDDDKAPDWSKGHLRQEYSTRVLRVCMNAHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRN-TTMGGLCHSERKD-ARGGTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHG---KFFLLPAAGTMRSVNRRDV-GPAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHMFVTERLVESCAWHPVFN 1185
            G+ NGLF   LR   AP      R     P WS G  R+  S  V   C  A  P+V EGD P  S M    +   +  +  LG +G   G     L+ D    W  G V  Q LR+   G  T+TI N E++   D   Y +++    + ++R  T MG LC   R +  R G LTG    DG AWSGSE   FA     +TN H D Q V G       +PAAG +R VN  D  GPAK+A+V  A DM +V++ L+++T K S++QY G   TL   A  L   GIRFVVIN+P  CSYA+P +C H FVT  LVES AWHPV+ 
Sbjct:   24 GLNNGLFSCLLRKDTAPREDRSRRP---CPFWSNGPERKGLSENVFIACTKAKIPLVLEGDAPPKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNG-GTFTIDNTEENKSRDRTCYATMENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNS-ADGVAWSGSECMLFAKDG-GMTNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWHPVYK 345          
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.710e-34
Identity = 97/260 (37.31%), Postives = 137/260 (52.69%), Query Frame = 1
Query:  373 AHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRN-TTMGGLCHSERKD-ARGGTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHG---KFFLLPAAGTMRSVNRRDVG-PAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHM 1134
            A  P+V EGD P+ S M    +      +  +G +G   G     L+      W  G V  + LR+   G  T+TI N E++   D   Y +++    + ++R  T MG LC   R +  + GTLTG+   DG AWSGSE   FA     +TN H D Q V G   +   +PAAG +R VN  +   PAK+A+V  A DM +V++ LK++T+K S++QY G   TL   A  L   GIRFVV+N+P  CSYA+P +   M
Sbjct:  314 AAIPLVLEGDAPAQSPMGEMMQYAAGKGVARIGYIGKTSGRGPLKLAPGLTDAWRTGAVTDKQLRDTLNG-GTFTIDNTEENKRTDKTCYATLENDTVTAMIREGTRMGELCFPRRGNHLQYGTLTGK-EADGVAWSGSECMLFAKDG-GMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPARPSFM 570          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized8.800e-14155.56protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.210e-11850.00protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.510e-5840.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.710e-3437.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8590contigE_fasciculatus_S2_contig8590:3228..4614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1191
Hectar predicted targeting categoryother localisation
Exons2
Cds size1191
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842516.9155948-CDS-E_fasciculatus_S2_contig8590:3227..38061696842516.9155948-CDS-E_fasciculatus_S2_contig8590:3227..3806Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8590 3228..3806 -
1696842516.9301481-CDS-E_fasciculatus_S2_contig8590:4002..46141696842516.9301481-CDS-E_fasciculatus_S2_contig8590:4002..4614Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8590 4003..4614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8590.16711.1prot_E_fasciculatus_S2_contig8590.16711.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8590 3228..4614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8590.16711.1

>prot_E_fasciculatus_S2_contig8590.16711.1 ID=prot_E_fasciculatus_S2_contig8590.16711.1|Name=mRNA_E_fasciculatus_S2_contig8590.16711.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=397bp
TTPISNIYPRQVQGGQATGDVRDDIEERIRSTQRSHEDDDQQLDVEDLGF
LVEMWRKGDLIDGPPEGFGSGLGGIFNGLFYGYLRIANAPPYTAGTRDDD
KAPDWSKGHLRQEYSTRVLRVCMNAHFPVVFEGDCPSGSVMAAGCRRGLE
INIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTI
QNFEDDMPVDAVSYDSIKCREASELVRNTTMGGLCHSERKDARGGTLTGE
MRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHGKFFLLPAAGTMRSVN
RRDVGPAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQ
LTEHGIRFVVINYPEHCSYAIPEKCGHMFVTERLVESCAWHPVFNF*
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mRNA from alignment at E_fasciculatus_S2_contig8590:3228..4614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8590.16711.1 ID=mRNA_E_fasciculatus_S2_contig8590.16711.1|Name=mRNA_E_fasciculatus_S2_contig8590.16711.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1387bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8590:3228..4614- (Ectocarpus fasciculatus EfasUO2)
ACTACTCCGATATCAAACATCTACCCGCGTCAGGTGCAAGGGGGACAAGC AACCGGGGACGTACGTGACGACATCGAGGAACGGATCCGTAGCACACAAC GTAGTCATGAAGATGACGATCAACAACTGGATGTCGAAGACTTAGGTTTT CTGGTCGAGATGTGGCGCAAGGGAGATCTGATTGACGGCCCCCCCGAGGG CTTTGGCAGTGGGCTGGGTGGTATCTTCAACGGTCTTTTTTATGGCTACC TCAGGATAGCGAACGCTCCGCCTTACACTGCTGGTACGAGAGACGACGAC AAAGCCCCCGACTGGAGCAAGGGCCACTTAAGGCAGGAATATTCCACAAG AGTGCTAAGGGTATGCATGAACGCACATTTTCCGGTCGTTTTCGAAGGAG ATTGTCCTTCGGGGTCTGTGATGGCAGCTGGCTGTCGACGGGGTCTTGAG ATCAACATCAAGACACTGGGGAATGTTGGACACCGGGTCGGCACCAAGAT GTTTGATCTGTCGAGTGATTTCGTGCAGAAATGGACCGAAGGACATGTTG GCGTGCAGCTGCTGCGCGAGGCATTCTGCGGCAAGAGCACATGGACTATC CAGAATTTCGAAGTGAGTCTGTCTCGCACTCCGACGAGTTGTATGTAGTC GCCGCGTCCTTTGTTTGATTATGTTTTATCTGCTGTTGGTTGACATACCA GACTTCAATGATGTAACCGGTAAAATGTTTGCTAACACACGGGCAGACCG AAGTCCAAGATATGATAGCCATTTATCTGAACGCTGCCGCATGTTGCCTG TTGCCCAGGACGACATGCCGGTGGATGCGGTGTCTTACGACAGCATCAAG TGCCGGGAAGCTTCGGAGCTCGTGCGTAACACGACGATGGGAGGCTTGTG TCATTCAGAGCGAAAGGACGCGCGAGGAGGCACCCTCACTGGGGAGATGC GCGTGGACGGGAAGGCATGGTCAGGGAGCGAAGTCACGGCATTCGCCATG ACTTCCTGTGCTGTAACCAATACGCACTCCGATGGTCAGATGGTCCACGG CAAGTTCTTCCTATTGCCGGCAGCTGGTACCATGCGGTCGGTCAACCGAA GGGACGTAGGCCCCGCCAAGCGAGCCGTAGTGACGTGTGCACACGACATG GACAAAGTCGTTGATGTGTTGAAACTAGACACAAGGAAGACTTCCTCCAC CCAGTACAAGGGGGCAATTGTAACCCTAGAGGGTCTGGCAAGTCAGTTGA CTGAACATGGCATCAGGTTCGTGGTCATTAACTACCCAGAGCATTGCTCG TATGCGATTCCGGAGAAATGCGGACACATGTTTGTCACAGAAAGACTGGT AGAATCGTGTGCTTGGCACCCAGTGTTTAACTTCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8590:3228..4614-

>mRNA_E_fasciculatus_S2_contig8590.16711.1 ID=mRNA_E_fasciculatus_S2_contig8590.16711.1|Name=mRNA_E_fasciculatus_S2_contig8590.16711.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1191bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8590:3228..4614- (Ectocarpus fasciculatus EfasUO2)
ACTACTCCGATATCAAACATCTACCCGCGTCAGGTGCAAGGGGGACAAGC
AACCGGGGACGTACGTGACGACATCGAGGAACGGATCCGTAGCACACAAC
GTAGTCATGAAGATGACGATCAACAACTGGATGTCGAAGACTTAGGTTTT
CTGGTCGAGATGTGGCGCAAGGGAGATCTGATTGACGGCCCCCCCGAGGG
CTTTGGCAGTGGGCTGGGTGGTATCTTCAACGGTCTTTTTTATGGCTACC
TCAGGATAGCGAACGCTCCGCCTTACACTGCTGGTACGAGAGACGACGAC
AAAGCCCCCGACTGGAGCAAGGGCCACTTAAGGCAGGAATATTCCACAAG
AGTGCTAAGGGTATGCATGAACGCACATTTTCCGGTCGTTTTCGAAGGAG
ATTGTCCTTCGGGGTCTGTGATGGCAGCTGGCTGTCGACGGGGTCTTGAG
ATCAACATCAAGACACTGGGGAATGTTGGACACCGGGTCGGCACCAAGAT
GTTTGATCTGTCGAGTGATTTCGTGCAGAAATGGACCGAAGGACATGTTG
GCGTGCAGCTGCTGCGCGAGGCATTCTGCGGCAAGAGCACATGGACTATC
CAGAATTTCGAAGACGACATGCCGGTGGATGCGGTGTCTTACGACAGCAT
CAAGTGCCGGGAAGCTTCGGAGCTCGTGCGTAACACGACGATGGGAGGCT
TGTGTCATTCAGAGCGAAAGGACGCGCGAGGAGGCACCCTCACTGGGGAG
ATGCGCGTGGACGGGAAGGCATGGTCAGGGAGCGAAGTCACGGCATTCGC
CATGACTTCCTGTGCTGTAACCAATACGCACTCCGATGGTCAGATGGTCC
ACGGCAAGTTCTTCCTATTGCCGGCAGCTGGTACCATGCGGTCGGTCAAC
CGAAGGGACGTAGGCCCCGCCAAGCGAGCCGTAGTGACGTGTGCACACGA
CATGGACAAAGTCGTTGATGTGTTGAAACTAGACACAAGGAAGACTTCCT
CCACCCAGTACAAGGGGGCAATTGTAACCCTAGAGGGTCTGGCAAGTCAG
TTGACTGAACATGGCATCAGGTTCGTGGTCATTAACTACCCAGAGCATTG
CTCGTATGCGATTCCGGAGAAATGCGGACACATGTTTGTCACAGAAAGAC
TGGTAGAATCGTGTGCTTGGCACCCAGTGTTTAACTTCTAG
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