mRNA_E_fasciculatus_S2_contig8590.16711.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI) HSP 1 Score: 423 bits (1088), Expect = 8.800e-141 Identity = 215/387 (55.56%), Postives = 265/387 (68.48%), Query Frame = 1
Query: 25 PRQVQGGQATGDVRDDIEERIRSTQRSHEDDDQQLDVEDLGFLVEMWRKGDLIDGPPEGFGSGLGGIFNGLFYGYLRIANAPPYTAGTRDDDKAPDWSKGHLRQEYSTRVLRVCMNAHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRNTTMGGLCHSERKDARGGTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHGKFFLLPAAGTMRSVNRRDVGPAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHMFVTERLVESCAWHPVFN 1185
P++ Q Q + R DI+ RI +Q LD FLV++W KG+LIDG EGFG+G G NGLF GYL +ANAPPY G RDD WSKG R EY+ + C+ AHFPV+FEGD SVM C+ L N+ +G +G R GT MF +S FV+ W EG + L++AF TWT QNFE+D VD +S+++I+C AS+LVRNT MGGLCH +R RGG LTG V GK+WSGSEVTAFAM + VT++H D QMVHG+ LPAAGTMRSVNRR GPAKRA++ CAHDMD+VVD+L LD K SS+QY GAIV LEGLA++L + IRFVV+++PE+CSYAIP +C HMFVT RLVESCAWHP+ N
Sbjct: 238 PQKRQKEQPNENRRSDIKRRILRSQEGG------LDNYICEFLVDIWEKGELIDGT-EGFGNGADGFDNGLFCGYLDMANAPPYVPGRRDDPTVAFWSKGTDRLEYTEHAFKACLKAHFPVIFEGDDTYRSVMGTACKSALARNLTRIGGLGGRNGTSMFGVSPSFVESWNEGVIDGDELKKAFGTNPTWTTQNFEEDDKVDVLSFNTIECVGASDLVRNTRMGGLCHPDRPPTRGGVLTGTTSVRGKSWSGSEVTAFAMRTGGVTHSHVDPQMVHGEHLYLPAAGTMRSVNRRGSGPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPILN 617
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI) HSP 1 Score: 358 bits (918), Expect = 3.210e-118 Identity = 193/386 (50.00%), Postives = 244/386 (63.21%), Query Frame = 1
Query: 46 QATGDVRDDIEERIRSTQRSHEDDDQQLDVEDLGFLVEMWRKGDLIDGPPEGFGSGLGGIFNGLFYGYLRIANAPPYTAGTRDDDKAPDWSKGHLRQEYSTRVLRVCMNAHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRNTTMGGLCHSERKDARG-----GTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHGKFFLLPAAGTMRSVNRRDVGPAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHMFVTERLVESCAWHPVFNF 1188
+A + RD++ RI Q Q L E LV+MW KG+L DG + G G G + NGLFYG+L NAPPY R+DD WSKG R+ +S RV R C+ A FPV+ EGD + SVM A C+ + ++I L N+G R GT MF LS +FV W EG+VG +LR+AF GK+TWTIQNFE++ VDA SY +I+C A+ +VR T MG LC+ + D G G LT + + W+GSEVTAFA +VT+ H D V+ K LPAAG MRSVNR D GPAKRA+V CAHDMD+VV + KLD RK + QY GA+ L LA++L + I FVVI++PE CSYAIP KC HM VT RLVE+CAW+P F
Sbjct: 14 EANEERRDNVRARILRCQHG-----QALAKETCDILVDMWHKGELKDGT-DSLGDGFGCLDNGLFYGFLSRDNAPPYNVRRREDDGDSFWSKGEARRRHSDRVFRACLTAGFPVLIEGDI-TRSVMGAVCKAAVGMHISKLRNLGVRRGTSMFSLSEEFVDCWVEGNVGDNMLRDAFGGKTTWTIQNFEENQRVDACSYQTIECAAATGIVRKTRMGALCYPDTADTAGTDNTGGELTKPVSIGEVLWAGSEVTAFATRRGSVTHIHVDALEVNEKPLFLPAAGAMRSVNRGDRGPAKRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWNPALPF 392
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE) HSP 1 Score: 203 bits (517), Expect = 1.510e-58 Identity = 133/328 (40.55%), Postives = 169/328 (51.52%), Query Frame = 1
Query: 220 GIFNGLFYGYLRIANAPPYTAGTRDDDKAPDWSKGHLRQEYSTRVLRVCMNAHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRN-TTMGGLCHSERKD-ARGGTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHG---KFFLLPAAGTMRSVNRRDV-GPAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHMFVTERLVESCAWHPVFN 1185
G+ NGLF LR AP R P WS G R+ S V C A P+V EGD P S M + + + LG +G G L+ D W G V Q LR+ G T+TI N E++ D Y +++ + ++R T MG LC R + R G LTG DG AWSGSE FA +TN H D Q V G +PAAG +R VN D GPAK+A+V A DM +V++ L+++T K S++QY G TL A L GIRFVVIN+P CSYA+P +C H FVT LVES AWHPV+
Sbjct: 24 GLNNGLFSCLLRKDTAPREDRSRRP---CPFWSNGPERKGLSENVFIACTKAKIPLVLEGDAPPKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNG-GTFTIDNTEENKSRDRTCYATMENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNS-ADGVAWSGSECMLFAKDG-GMTNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWHPVYK 345
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI) HSP 1 Score: 144 bits (363), Expect = 4.710e-34 Identity = 97/260 (37.31%), Postives = 137/260 (52.69%), Query Frame = 1
Query: 373 AHFPVVFEGDCPSGSVMAAGCRRGLEINIKTLGNVGHRVGTKMFDLSSDFVQKWTEGHVGVQLLREAFCGKSTWTIQNFEDDMPVDAVSYDSIKCREASELVRN-TTMGGLCHSERKD-ARGGTLTGEMRVDGKAWSGSEVTAFAMTSCAVTNTHSDGQMVHG---KFFLLPAAGTMRSVNRRDVG-PAKRAVVTCAHDMDKVVDVLKLDTRKTSSTQYKGAIVTLEGLASQLTEHGIRFVVINYPEHCSYAIPEKCGHM 1134
A P+V EGD P+ S M + + +G +G G L+ W G V + LR+ G T+TI N E++ D Y +++ + ++R T MG LC R + + GTLTG+ DG AWSGSE FA +TN H D Q V G + +PAAG +R VN + PAK+A+V A DM +V++ LK++T+K S++QY G TL A L GIRFVV+N+P CSYA+P + M
Sbjct: 314 AAIPLVLEGDAPAQSPMGEMMQYAAGKGVARIGYIGKTSGRGPLKLAPGLTDAWRTGAVTDKQLRDTLNG-GTFTIDNTEENKRTDKTCYATLENDTVTAMIREGTRMGELCFPRRGNHLQYGTLTGK-EADGVAWSGSECMLFAKDG-GMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPARPSFM 570 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8590.16711.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8590.16711.1 >prot_E_fasciculatus_S2_contig8590.16711.1 ID=prot_E_fasciculatus_S2_contig8590.16711.1|Name=mRNA_E_fasciculatus_S2_contig8590.16711.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=397bp TTPISNIYPRQVQGGQATGDVRDDIEERIRSTQRSHEDDDQQLDVEDLGFback to top mRNA from alignment at E_fasciculatus_S2_contig8590:3228..4614- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8590.16711.1 ID=mRNA_E_fasciculatus_S2_contig8590.16711.1|Name=mRNA_E_fasciculatus_S2_contig8590.16711.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1387bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8590:3228..4614- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8590:3228..4614- >mRNA_E_fasciculatus_S2_contig8590.16711.1 ID=mRNA_E_fasciculatus_S2_contig8590.16711.1|Name=mRNA_E_fasciculatus_S2_contig8590.16711.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1191bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8590:3228..4614- (Ectocarpus fasciculatus EfasUO2)back to top |