mRNA_E_fasciculatus_S2_contig8573.16699.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8573.16699.1
Unique NamemRNA_E_fasciculatus_S2_contig8573.16699.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.460e-36
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   10 PTPSPTAEGSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            P+ SP  EGS VALGCY DDREDRIMDDLALSDYSMTTELCEQTC+GNTYFATQYGRECWCGSAGADYA H
Sbjct:  208 PSTSPPVEGSSVALGCYEDDREDRIMDDLALSDYSMTTELCEQTCVGNTYFATQYGRECWCGSAGADYASH 278
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: WSC (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 5.890e-36
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:   10 PTPSPTAEGSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            PTP+PT +G P+ALGCYGDDREDRIMDDLALSDYSMTTELCE TCLG+TYFATQYGRECWCGSA  DYALH
Sbjct:  195 PTPAPTVDG-PLALGCYGDDREDRIMDDLALSDYSMTTELCELTCLGSTYFATQYGRECWCGSADMDYALH 264
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.330e-35
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:   10 PTPSPTAEGSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            PTPSP A G P+ALGCY DDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAG +YALH
Sbjct:  622 PTPSPAATG-PLALGCYEDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGVEYALH 691
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 8.880e-35
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:   10 PTPSPTAE-GSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            PTPSPTA+  SP++LGCY DDREDRIMDDLALSD +MTTELCEQTCLGNTYFATQYGRECWCGSAGADY LH
Sbjct:  730 PTPSPTADDASPLSLGCYEDDREDRIMDDLALSDNAMTTELCEQTCLGNTYFATQYGRECWCGSAGADYILH 801
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.320e-32
Identity = 60/71 (84.51%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:   10 PTPSPTAEGSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            PTPSPT   S VALGCY DDREDRIMD+L LSD SMTTELCE TCLGNTYFATQYG ECWCGSAGADYA+H
Sbjct:  459 PTPSPTEAASFVALGCYEDDREDRIMDELVLSDPSMTTELCELTCLGNTYFATQYGSECWCGSAGADYAVH 529
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.430e-32
Identity = 59/71 (83.10%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   10 PTPSPTAEGSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            PTPSP  EG   ALGCY DD EDRIMDDL LSD SMTTELCE TC G+TYFATQYGRECWCGSAGADYALH
Sbjct:  294 PTPSPIQEGPSPALGCYADDPEDRIMDDLVLSDSSMTTELCELTCEGSTYFATQYGRECWCGSAGADYALH 364
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.120e-30
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   43 VALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            VALGCYGDDRE RIMDDL LSD SMTTELCE TCLG+TYFATQYGRECWCGS GADYALH
Sbjct:   94 VALGCYGDDREARIMDDLVLSDSSMTTELCELTCLGSTYFATQYGRECWCGSDGADYALH 153
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.150e-24
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   28 AEGSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            A G P++LGC+ DD +DRIMDD AL D SMTTELCE TC G++YF+TQYGRECWCG AG DY  H
Sbjct:   24 ARGGPLSLGCFNDDGDDRIMDDRALVDTSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKH 88
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.300e-16
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:  115 MTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            MTTELCE TCLG+TYFATQYGRECWCGSAG DYALH
Sbjct:    1 MTTELCELTCLGSTYFATQYGRECWCGSAGMDYALH 36
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.550e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   49 LGCYGDDREDRIMDDLALSDYS-MTTELCEQTCLGNTYFATQYGRECWCGSAGADYALH 222
            +GCY D+ + RIM+ LAL+D S MT E+CE  C GNTYF  QYGREC+CG +  D   H
Sbjct:  380 VGCYQDESDARIME-LALTDSSSMTMEICEAECTGNTYFGLQYGRECFCGGSSTDLLEH 437
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8573.16699.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.460e-3688.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WSC5.890e-3687.32domain containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.330e-3590.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.880e-3587.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.320e-3284.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.430e-3283.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.120e-3090.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.150e-2469.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.300e-1691.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.550e-1155.93protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8573contigE_fasciculatus_S2_contig8573:37..1690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score137.1
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog2880.D7FUE6
Model size222
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
Cds size222
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842515.3537602-CDS-E_fasciculatus_S2_contig8573:36..751696842515.3537602-CDS-E_fasciculatus_S2_contig8573:36..75Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8573 37..75 -
1696842515.3694365-CDS-E_fasciculatus_S2_contig8573:841..8981696842515.3694365-CDS-E_fasciculatus_S2_contig8573:841..898Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8573 842..898 -
1696842515.385713-CDS-E_fasciculatus_S2_contig8573:1564..16901696842515.385713-CDS-E_fasciculatus_S2_contig8573:1564..1690Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8573 1565..1690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8573.16699.1prot_E_fasciculatus_S2_contig8573.16699.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8573 37..1690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8573.16699.1

>prot_E_fasciculatus_S2_contig8573.16699.1 ID=prot_E_fasciculatus_S2_contig8573.16699.1|Name=mRNA_E_fasciculatus_S2_contig8573.16699.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
EELPTPSPTAEGSPVALGCYGDDREDRIMDDLALSDYSMTTELCEQTCLG
NTYFATQYGRECWCGSAGADYALH
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mRNA from alignment at E_fasciculatus_S2_contig8573:37..1690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8573.16699.1 ID=mRNA_E_fasciculatus_S2_contig8573.16699.1|Name=mRNA_E_fasciculatus_S2_contig8573.16699.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1654bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8573:37..1690- (Ectocarpus fasciculatus EfasUO2)
GAAGAGCTTCCAACTCCTAGCCCTACGGCAGAAGGCTCCCCTGTTGCACT
TGGCTGCTACGGGGACGATCGCGAAGACCGTATCATGGACGACCTCGCGC
TTTCCGACTATTCCATGACCACCGAGGTGACATAGATGTTGAAAATATTC
GTCACACTGTTTTCGGTTTGTGCAGAGACAGAGAGACGGAGAGGCACAGA
GACAGGTTTGCGAGGAGTTTCTCAAGAAGAGGTCCTCAAGATGCATTCAT
CACCTCGGGACTCGAACCTACCAGGTCTCTCCATCGTTGGTGTAAAATAT
CATGCAAACCAGACGACGGTCAGCTTGTTGTCCCTCTTGAACTTCTTTAG
GCCTTTCTAAACTTTGAACGCCTCGGCTGATAGATGCTGTGCAGGCGCGG
GTCGTGAGTCACCGTACACAGCGAAACGCTCCGTGTGTGCACGTCAATCA
CTCACTCCCATTCCCGAGTACCGCGTAGAAGACCAGCCTCGTGTGGGCTG
TTCACAGGAACGCCCAGCCCCTGCATGAGCAACGTATTTAGATCGCATGG
GCAGAGTGGCAACCAAAATACAAACTCTACGCCCCTACATGAAGAAGATG
AAAAATACGTATATTGTGCACTTCTAGGTCGTTGAGACTACATGTATGCG
TATATCTTGTCGGAAGCCATCCTTTTTGTCAACGCCTATATTTTTTCTTT
GCATCGTGGTGAAACCTCACGTGCGCCTGCGTGGTTGCTGCATTTCTCTC
TCCCCCCTGCCGTATTCTGCCGTGGTACTATCATGACGCCAGCTGTGCGA
GCAAACATGCCTCGGAAACACTTACTTCGCCACTCAGTACGGGCGAGAGG
TGAGTTCAAGTAGACGGCGTAGAGTATTGTGCTGGAAAGATTCGGGTGGT
TTGGTTTTTGCCGGGAACGTTTCGGAGGGACACGCTGAAACCAGTTTGGA
TGCGGGATTTCAGATCGCCTTCTTCTGTGACATGTCGAAAGAAGTTCAGT
ACACACACCGGCTCCCAAGGAGCCACTTACACCTTTTCCATCCCGGGAAA
GTAGAGCTATCTTGTGCGACTGTCAAGTTGGTCTGATCTTGATCCTGCGC
TGATTTTCAGCTTCCCGCTGTCATTGTATCTTAACTGCGACACCGGAGGA
GAGGAGAGTTTGGACGGTTGTCAATGAGGCGAAACAGCACAATGACGACA
ACACCACGCAGTTATTTATTGCATACAAGAGCATTGGAGGCTGTCTTGCG
ACACTTGGTCCCCGAATGTCCGAGGGAAAGATGGAAGGGCGTGGAAGATC
CGTTCAATCCTCTATGCATAAGAGCGTGAGAATCGAGGAGCGTCTATGTT
GCCTTTTTTCGATTTTATGTCGATGGACCAAGTTCTGAAACCATACGGGC
GAATAGCCTCTTCTATGCGCTCCGAGAGGCGTTGATCCCAAGCAGGCCTA
AAAAAACATTGACAACCAAACTGGTCATAGCGTTCTGCCCGTCCGACTGG
CCGTATGGTCGAGCTTTCCTCTTGCCCACCGAAAGCCTCAAGGGTGTGCG
TCTGTCGCCTTTGCTAATATCGCCCATCTGCTTGTGTTACCTCTACCTGA
AACAAACACACACAGTGCTGGTGTGGATCGGCTGGTGCGGACTACGCTTT
GCAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8573:37..1690-

>mRNA_E_fasciculatus_S2_contig8573.16699.1 ID=mRNA_E_fasciculatus_S2_contig8573.16699.1|Name=mRNA_E_fasciculatus_S2_contig8573.16699.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8573:37..1690- (Ectocarpus fasciculatus EfasUO2)
GAAGAGCTTCCAACTCCTAGCCCTACGGCAGAAGGCTCCCCTGTTGCACT
TGGCTGCTACGGGGACGATCGCGAAGACCGTATCATGGACGACCTCGCGC
TTTCCGACTATTCCATGACCACCGAGCTGTGCGAGCAAACATGCCTCGGA
AACACTTACTTCGCCACTCAGTACGGGCGAGAGTGCTGGTGTGGATCGGC
TGGTGCGGACTACGCTTTGCAC
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