mRNA_E_fasciculatus_S2_contig8570.16697.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs.
Match: RNB (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE) HSP 1 Score: 804 bits (2077), Expect = 5.000e-284 Identity = 457/553 (82.64%), Postives = 475/553 (85.90%), Query Frame = 1
Query: 1 MTAENGQSSSSGKGANSNQLRLLPGTVVLQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVRTEAGEPLTIDAGQIVGVWREDEMTGRLPLGSVTGAGGADGDE------SXXXXXXXASVVAGWVEVREETRALLQGTPARGLDLGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSPGETFRPSAVERAAAAQVLAGERSRFKRVVSKRLGQAGVSPGGGSXXXXXXXXXXXTGVGAEGEVLPADVGDGAVGIREEGGREGTVDAQGRSERKIEEXXXXXXXXXLREPVLISVGGFKAMDQSVAVTREVADFCRVVGEVKRAAAAAAEGVAAGYGDAAAAEEGGAGSALARAGLFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVEITGKANPTAAKSILVDVGLWTSRRQREEEEGGRPGEEGGEAGRDEAGEEGGVIPWSAEALAAAAALGGERARRGANYGKRRPLEEVGAPAPFGRHIMNEKHRHDFRGASFGVYCIDGAGTSFLDDAFSVDPETREVFIHITDVQGMVPTG 1641
MTAEN QSSS+G NQLRLLPGTV+LQPGDPIEFWHAQGLVLGNYESPVPGRQSL+VRTEAGEPLTIDAGQIVGVWREDEM+G LPLG VT GADGD+ S XXXXXA+VVAGW EVRE+ RALLQG PARGLD+GAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPF+FRSPGE FRPSAVERAAAAQVLAGERSRFKRVVSKRLG AGVSP G G GAEGEVL ADVGDGAVG+R GGR GTV+AQ R ERK EE L +PVLISVGGFKA+DQSVAVTREVADFCRVVGEVKRAAAA GVAAGYGDAAAAEEGGAGSALARA LFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMV+ITGKAN TAAK ILVDVGLWTSRRQ EE GG+PGEE GE GRDEAGEEGGVIPWSAEAL AA ALGGERARR NYGKRRPLEEVGAPAPFGRH++ HDFRGASFGVYCIDGAGT FLDDAFSVDPETREVFIHITDVQG+VPTG
Sbjct: 1 MTAENDQSSSTGN----NQLRLLPGTVILQPGDPIEFWHAQGLVLGNYESPVPGRQSLLVRTEAGEPLTIDAGQIVGVWREDEMSGHLPLGRVTA--GADGDDGGDXXSSAAXXXXXAAVVAGWAEVREKIRALLQGMPARGLDVGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFQFRSPGEAFRPSAVERAAAAQVLAGERSRFKRVVSKRLGPAGVSPDGRGGRRKQRARGAGKGGGAEGEVLVADVGDGAVGVRGGGGRGGTVNAQCRDERKQEEEED------LSQPVLISVGGFKAVDQSVAVTREVADFCRVVGEVKRAAAA---GVAAGYGDAAAAEEGGAGSALARARLFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVDITGKANSTAAKCILVDVGLWTSRRQPEEG-GGKPGEEVGEVGRDEAGEEGGVIPWSAEALEAATALGGERARRRVNYGKRRPLEEVGAPAPFGRHVL-----HDFRGASFGVYCIDGAGTRFLDDAFSVDPETREVFIHITDVQGLVPTG 532
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs.
Match: RNB (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.600e-20 Identity = 131/492 (26.63%), Postives = 180/492 (36.59%), Query Frame = 1
Query: 352 WVEVREETRALLQGTPARGLDLGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSPG---------------ETFRPSAVERAAAAQVLAGERSRFKRVVSKRLGQAGVSPGGGSXXXXXXXXXXXTGVGAEGEVLPADVGDGAVGIREEGGREGTVDAQGRSERKIEEXXXXXXXXXLREPVL-ISVGGFKAMDQSVAVTREVADFCRVVGEVKRAAAAAAEGVAAGYGDAAAAEEGGAGSALARAG----------------------------LFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVEITGKANPTAAKSILVDVGLWTSRRQREEEEGGRPGEEGGEAGRDEAGEEGGV---------------IPWSAEALAAAAALGGERARRGANYGK---RRPLEEVGAPAPFGRHIMNEKHRHDFRGASFGVYCIDGAGTSFLDDAFSVDPETREVFIHITDVQGMVPTG 1641
W +++E R LL P R LDL W+ A +GKG V++ A +LFG + + G + F+ S + PSA ER AA VLA + RFKRV VL +PV+ + GGFK +DQSV T + F +V + A A A DAAAA +A L + + I+HSLE A+GG L+P+AK + ++ + AA ++LV +G WT R ++ G A +PWSAEAL AAA + R RR A Y + P +GAP P GR D+RGA+F VYC+D +F DDA S DP+ RE+ IH+ D Q +V G
Sbjct: 12 WPLLQQEARRLLSRMPPRSLDLHDLWKLARGKGKGVVLSTCDVARWLFGGGA-RRGGKQHAQSFQLTSQQGHASSDFELQQQQQQPVWAPSAAERVAAGLVLAADLQRFKRVPC---------------------------------VLRHS-----------------------------------------DPVVSVCEGGFKPVDQSVVATNQAMSFATMVKDQFSTAQPPAPASDA-TSDAAAAXXPAPKVPAPKAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSDASRRQIVHSLEMLALGGSADGLLPQAKAALRQMGHEPTAAAAHAVLVQMGAWTERARKPS---------AGTAXXXXXXXXXXXXXXXXXXXXXXXXXXVPWSAEALRAAADVAALRRRREAQYARGPLAAPRTPLGAPLPNGR--------RDYRGAAFSVYCVDAPSANFYDDAVSWDPDARELLIHVVDAQLLVEDG 410
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs.
Match: Weakly (cyanobacterial exoribonuclease (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQR4_9EUKA) HSP 1 Score: 66.2 bits (160), Expect = 6.380e-8 Identity = 56/202 (27.72%), Postives = 80/202 (39.60%), Query Frame = 1
Query: 82 VLQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVRTEAGEPLTIDAGQIVGVWREDEMTGRLPLGSVTGAGGADGDESXXXXXXXASVVAGWVEVREETRALLQGTPARGLDLGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSP---GETFRPSAVERAAAAQVLAGERSRFKRVVSKRLGQAGVSP 678
+L G +E WH GL +GN+ S G +L+V +G + +D GQ+V VW D P GW ++ E LL P LDL W+ + A A E + + +L F SP G + R V+R AA Q+LA ER+ FKRV + +G +P
Sbjct: 54 LLCSGAAVELWHEGGLAVGNFRSRAEGSNALIVELSSGRSIKVDGGQLVDVWAADAGYPSTP--------------------------DGWTSLQAEAAGLLAELPPHMLDLRPLWQR-------LLTEKAAARERVDSSRVAQEL---------FTSPHRQGPSARQRLVQRLAAGQLLAAERTLFKRVPIELAQWSGDAP 213 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8570.16697.1 >prot_E_fasciculatus_S2_contig8570.16697.1 ID=prot_E_fasciculatus_S2_contig8570.16697.1|Name=mRNA_E_fasciculatus_S2_contig8570.16697.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=547bp MTAENGQSSSSGKGANSNQLRLLPGTVVLQPGDPIEFWHAQGLVLGNYESback to top mRNA from alignment at E_fasciculatus_S2_contig8570:604..4549- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8570.16697.1 ID=mRNA_E_fasciculatus_S2_contig8570.16697.1|Name=mRNA_E_fasciculatus_S2_contig8570.16697.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3946bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8570:604..4549- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8570:604..4549- >mRNA_E_fasciculatus_S2_contig8570.16697.1 ID=mRNA_E_fasciculatus_S2_contig8570.16697.1|Name=mRNA_E_fasciculatus_S2_contig8570.16697.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1641bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8570:604..4549- (Ectocarpus fasciculatus EfasUO2)back to top |