mRNA_E_fasciculatus_S2_contig8568.16695.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8568.16695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI) HSP 1 Score: 268 bits (685), Expect = 1.910e-88 Identity = 138/163 (84.66%), Postives = 149/163 (91.41%), Query Frame = 1
Query: 1 SAVTYVVSQFIMSVMVINCWSSKARAGPVIYLLKFIELTSINLWAISSMAIALLIASIVQAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKSLLVCIRTSKRMKL 489
SAVTYVVSQ +MSVMVINCWSSK RAGPVIY+LKF+ELTSINLWAISSMAI+LLIASIVQAFSKMRRVPRVIGSSRVIWSC+ VA+GL LLSA FW D+ VTGSYFW+TN DP L+RWISLSFVTTQG AG LMAL L+FV TG+RRKSLLVCIRTSKRMKL
Sbjct: 10 SAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQAFSKMRRVPRVIGSSRVIWSCVFVAMGLTLLSAPFWNDVLVTGSYFWITNRNDPNLARWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKL 172
BLAST of mRNA_E_fasciculatus_S2_contig8568.16695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI) HSP 1 Score: 256 bits (653), Expect = 2.480e-81 Identity = 130/220 (59.09%), Postives = 172/220 (78.18%), Query Frame = 1
Query: 1 SAVTYVVSQFIMSVMVINCWSSKARAGPVIYLLKFIELTSINLWAISSMAIALLIASIVQAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKSLLVCIRTSKRMKLYSILSAFGTCVYLYNGFVLLFDELSRLGSAKKELTMVGWCSKYLHVVAETLVLYYAF 660
S V YV+SQFIMSVMV+NCWSS+ +GP IY LKF+ELT++NLW+ISS+AIA+LIASIVQ+F K+RRVP +IGS+R C+++A+ +LSA FW + +TG YFWVTNT + RWISLSF TQ AG+LMALA+LF V+GER SL VC +TS+R+K + IL+ FGT VYLYNG VL+FDE S +K+ L ++GWCS+Y+HV+A+T +++ AF
Sbjct: 35 SGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQSFVKLRRVPTMIGSTRAACVCLVLAILATVLSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISKR-LVIIGWCSRYVHVIADTGIIFGAF 253
BLAST of mRNA_E_fasciculatus_S2_contig8568.16695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE) HSP 1 Score: 248 bits (634), Expect = 3.410e-78 Identity = 128/220 (58.18%), Postives = 166/220 (75.45%), Query Frame = 1
Query: 1 SAVTYVVSQFIMSVMVINCWSSKARAGPVIYLLKFIELTSINLWAISSMAIALLIASIVQAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKSLLVCIRTSKRMKLYSILSAFGTCVYLYNGFVLLFDELSRLGSAKKELTMVGWCSKYLHVVAETLVLYYAF 660
S V YV+SQFIMSVMV+NCWSS+ +GP IY LKF ELT +NLW+ISS+AIA+LIASIVQ+F +RRVP +IGS+R C+++AV +LSA FW + +TG YFWVTNT + RWISLSF TQ AG+LMAL +LF +TGER SL VC +TS+R+K + IL+ FGT VYLYNG VL+FDE S + + L ++GWCS+Y HV+A+T +++ AF
Sbjct: 35 SGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVTLRRVPTMIGSTRAACVCVVLAVLATVLSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISTR-LVIIGWCSRYAHVIADTGIIFGAF 253
BLAST of mRNA_E_fasciculatus_S2_contig8568.16695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 1.070e-10 Identity = 57/208 (27.40%), Postives = 103/208 (49.52%), Query Frame = 1
Query: 43 MVINCWSSKARAGPVIYLLKFIELTSINLWAISSMAIALLIASIVQAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAG----VLMALALLFVVTGERRKSLLVCIRTSKRMKLYSILSAFGTCVYLYNGFVLLFDELSRLGSAKK-ELTMVGWCSKYLHVVAETLVLY 651
MV CW+ K +I +KF+EL S ++ A++ +AI + +A IV + ++RV V S ++ + +++G+ + W+ + V G+ FW+ N+ + + +S + G V++A LLF R K + C R R++ Y L+ GT + L G + + LG K+ L + W +Y+H+ +T VLY
Sbjct: 24 MVTVCWAGK-NLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSV-SSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDA-VVVSIFFLEFIVGLCMFVIVAWLLLF-----RLKEVKECWRIHARIRYYLCLTVLGTGISLSIG---ICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLY 220
BLAST of mRNA_E_fasciculatus_S2_contig8568.16695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 1.220e-8 Identity = 50/165 (30.30%), Postives = 86/165 (52.12%), Query Frame = 1
Query: 43 MVINCWSSKARAGPVIYLLKFIELTSINLWAISSMAIALLIASIVQAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKSLLVCIRTSKRMKLYSILSAFGTCVYLYNG 537
M+ CW+ +I LKF+EL S N+ A++++AI + +A +V + + RV + S RVIW +++AVG A + WK I +TG+YF ++D + W +S + G+ M +A++ + R K + C + R++ Y L+ T V L G
Sbjct: 1 MISVCWAG-GNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSS-LSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYF-SPYSEDKQDLDWSVVSRFLFEFIVGICM-IAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLG 161
BLAST of mRNA_E_fasciculatus_S2_contig8568.16695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 1.110e-6 Identity = 48/169 (28.40%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 43 MVINCWSSKARAGPVIYLLKFIELTSINLWAISSMAIALLIASIVQAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLM----ALALLFVVTGERRKSLLVCIRTSKRMKLYSILSAFGTCVYLYNG 537
M+ CW+ A +I KF+EL S+N+ A++++AI + +A +V + + + S +I +++++G A +A FW+ I ++G+ F+ T++ R S WI++S + F G+ M A LLF +T + C + R++ Y L+ T V L G
Sbjct: 5 MISVCWTG-ANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFF-PETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKE-----CWKMHARIRYYFGLTLIATGVNLILG 166 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8568.16695.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8568.16695.1 >prot_E_fasciculatus_S2_contig8568.16695.1 ID=prot_E_fasciculatus_S2_contig8568.16695.1|Name=mRNA_E_fasciculatus_S2_contig8568.16695.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=227bp SAVTYVVSQFIMSVMVINCWSSKARAGPVIYLLKFIELTSINLWAISSMAback to top mRNA from alignment at E_fasciculatus_S2_contig8568:293..5226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8568.16695.1 ID=mRNA_E_fasciculatus_S2_contig8568.16695.1|Name=mRNA_E_fasciculatus_S2_contig8568.16695.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4934bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8568:293..5226- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8568:293..5226- >mRNA_E_fasciculatus_S2_contig8568.16695.1 ID=mRNA_E_fasciculatus_S2_contig8568.16695.1|Name=mRNA_E_fasciculatus_S2_contig8568.16695.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=681bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8568:293..5226- (Ectocarpus fasciculatus EfasUO2)back to top |