mRNA_E_fasciculatus_S2_contig8561.16691.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8561.16691.1
Unique NamemRNA_E_fasciculatus_S2_contig8561.16691.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8561.16691.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI00_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 6.840e-13
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:  541 RRGGKHGGGGHRKKGXXXXXXXXXXXXXXXXXXXXXDGSRAAVRRAVKDWKVQKNIKGPVDKGDKHLR 744
            RRGGKH GGGHRKKG   XXXXXXXXXXXXXXXXXXDGSRAA+RRAVKDWKVQ NIKG V KGDKHLR
Sbjct:  164 RRGGKH-GGGHRKKGKSGXXXXXXXXXXXXXXXXXXDGSRAAMRRAVKDWKVQNNIKGSVGKGDKHLR 230
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8561.16691.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.840e-1388.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8561contigE_fasciculatus_S2_contig8561:1527..5984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size744
Hectar predicted targeting categoryother localisation
Exons4
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.7548928-CDS-E_fasciculatus_S2_contig8561:1526..15951696842514.7548928-CDS-E_fasciculatus_S2_contig8561:1526..1595Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8561 1527..1595 +
1696842514.7690787-CDS-E_fasciculatus_S2_contig8561:3678..38281696842514.7690787-CDS-E_fasciculatus_S2_contig8561:3678..3828Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8561 3679..3828 +
1696842514.7806766-CDS-E_fasciculatus_S2_contig8561:4672..50681696842514.7806766-CDS-E_fasciculatus_S2_contig8561:4672..5068Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8561 4673..5068 +
1696842514.790895-CDS-E_fasciculatus_S2_contig8561:5855..59841696842514.790895-CDS-E_fasciculatus_S2_contig8561:5855..5984Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8561 5856..5984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8561.16691.1prot_E_fasciculatus_S2_contig8561.16691.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8561 1527..5984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8561.16691.1

>prot_E_fasciculatus_S2_contig8561.16691.1 ID=prot_E_fasciculatus_S2_contig8561.16691.1|Name=mRNA_E_fasciculatus_S2_contig8561.16691.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=248bp
MPGHRDQQGGRGRDRHRGARRDDERHPPGHGGRGAGRGGGGGRARRGHKG
SGSSSSDRSRGSSTSDYSSGSESDGAGGRRRRQRRGGGKSKSKTRGGARS
RSNSKTRGGARSNSRTRPPPRSRSNSKTRGGARSNSRTRAAAPCSRSNSR
TRAAPRSRSNSKTRGGGPRSRSNSRTPGAGRRGGKHGGGGHRKKGKSGSG
SDSDSSSSSSSSSSSSDGSRAAVRRAVKDWKVQKNIKGPVDKGDKHLR
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mRNA from alignment at E_fasciculatus_S2_contig8561:1527..5984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8561.16691.1 ID=mRNA_E_fasciculatus_S2_contig8561.16691.1|Name=mRNA_E_fasciculatus_S2_contig8561.16691.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4458bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8561:1527..5984+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGGGTCATCGTGACCAACAGGGCGGCCGTGGACGAGACCGGCACCG
CGGCGCGCGCCGTGATGATGTGAGTGTCTGCTACTGTTTGCAGCGGCAGA
GGAAAGGCGCCTACTGCTATTGCATGTGTCGACGTTTGCCCTCCGCATCC
ATGCACTGCCGTTGCAACAGCAGTAGGAACCGGCGTCTTCAACATCTGTC
AGAAGTCGATGGTGCTACAGCAGTATGATGATGAATCCCTGCGAATGAAT
AATGCCTTGCGTAGCACACCGAACCTGACCAGTTCTGGAGAGAGTGCAAG
GGGTTATCTCTTGAGAGCAAACAAACAGCCCACGGCGTGCTTTGCGCTGG
AACAGGGTTCGTCACACGAGCTGCAACTGCTCAACTGCTGTATTTCTCCC
CATCCGAAGAGCCAAACTGCGATAAATGCCGGAATTTGGAATTTGACCGC
GTCTTTGCATGCATTGGTGCACTCGCATCACTAATGTATCAATACCAGGG
TGCGAGGGTCAGAATATTCCGAAGAAGAACCCGATGACCCGACCAAGTGA
GGTGTGCGCATAACATCACCATTTCATTGAACAGAGCAGGCCGCACGCGA
GTACTCGCCGCCTCTGGCTTGGAAGGCTACAGCACCACTCGATGCTAATT
TTAATTACTTAGACTACACTTCTTGTACGTGGTATGTTTACTTATACAAA
TACGCACATGTCTATTCACGGGGTTCCCGATCGTGGACTCTAAAAACGCT
TTCCTGTTGTTCAGCCGCACTGAGCCCGCCAGTTATGCCGATGCTAATGA
TGGTGAAGGAAAGACATGCACACTACAGTACAATATGCACACACACTTGT
CTTCTCTTCTCTTCTGTGTATCAGTTCATCGGTGTGTTCCTCCGTCCGCG
GCTTGGTTCGCCATCTTGGCGTCATTGTTGCTGGAGGGTTGGTGGCAGCG
GCACTGCTGTACCGTAGCCAACAACAACAAGTGACAGCAAGCGTTGCATG
CATGCGAGGTTGGGTTGTTCCGGCGGCGTTTTCCTCAGCAGTCCGCGAGG
CTCCCGATTCGCATCATGTTTCTCTGACCCGTGTGTGACCGCAACCACAC
CAATCAGATTTCACACCCACAACGCCGTGACACGATTTGCATGCCTGTAC
CCGAGCACGTCGATGGACGCATTCCCAGGGAAGGCTCCGGTGTATATCTC
TGGTCTCGAGATGTCAAGGTGCCGCAGGTTGCATAAGGTATCACACCCCT
GGCCCGACGTTCAAAGCTCGAGTACTCGGCAGGAAAAGCAGCGACGGAAC
CGAAAATGGCGGCGTTAGAATGGTCTTGTGGGAAGCCTTCTGACAACGTG
CTTCGTTTGACTTCATCATCCTCTTTGTCGCTTTGAAAAGCGGTCCCAAG
CTGTTCCCGCCTTGTGAAAAACGGTTGTCCGATGGCGAGAAGAATAAGTA
TGCGCAACAGGAAGGCGGAGGTACTGCTATGCCTGTACAATAATAGCACC
ACAGCAAGGAAGGCAGGGGACACAACTCCTGCGTAACGTAGGCGACACAA
GATACCACACACCCCTGGACAGATTTTCAGAGCTCGACAACTCTACGACG
AAGACGATGCCAACATCAAATGATGTGTTTTCGGGAAGATCTCGATAAGG
CGGTCGCAACGCCAACGTTTTCAGGCGCCTCCGCTTTTTCTACTGCGGAG
TAATCGAGCTTTGAAAACCGGTCCAGGTGGTGTGGTATCTTGTGTCATGT
CATGTCACCTACGGTAGTCTTTCCCCTGTGTAACCCCGGCTGGCGCGTCC
ATGGTTTTATCGAAACGTTGTAAGGACCGACGTTCGGAATAATGGGGTGA
CAAAACAAGATGACTGGGGGGGGGGTGTAACCATATCCCCTTTCCAATCT
CTCGAGGGAGTAAGGATTGCGGAGGACAGACAAGAATGGCATGATGACCA
ACGACGATCGAATGAACGGTGTTTATCAGGGCCGCGCGCCGACCCTCGTC
ACACACACTAAATATATATGTATGCCCAGAGCTATGTATAGTGTGTGTAT
GTCCAGAGCTTGTATCTTGTTGCAGAGATCGAAAGGCTCCACCCCACCGT
GCCCGTGTTTCTGTTCTTCTCCTTCGCATGCGTTGGAATTAACGGTGTGC
AGGAACGCCACCCACCCGGGCACGGCGGGCGTGGTGCAGGCCGTGGCGGC
GGCGGAGGGCGGGCCAGGCGCGGCCACAAGGGCAGCGGCAGCAGCAGCAG
CGACCGCAGCCGCGGCAGCAGCACCAGCGACTACAGCAGCGGCAGCGAAT
CTGTAAGTCGGGGGGGTGACGCTGTCTGTCCACGTTTGCACATGCGTAGG
TCGAAGAAGCACCGCTCGTGCGGGGCCGTAGGCGAAAAACCAAGGAGGGT
ATGAAGACAACGAACGTTTTAGGTTCAGACCGCACGGCCGGCGTTTCGGA
GCTGCGCGTCCGAAAGCACTTAACACCAACCTGCCGCGTGGCAAACGGAA
TGTCCGCGGCAGAGAGATCTTCGAGAGTTCGTGTACAAACCTCGGCAACC
GAGTGGAAGACTCACCAGAAGAACAAGCGACAAAGCCTTGCTTTTCCGCC
TCGTTTTACTTGAACAAAGTGGAAACAAGCACGAGTGGCAAAATCTCGAA
ACATGCCAACATCTTCGGCCTGCAGATCAATAGCTGTGGTCCGCTGCGGA
GCACGCGCAAGCGTTCCCCCCAACCGCTAGGATTGGCAGAACATTTGTTT
TACACCTTTGGCGAAGTAGGAAGGAACGACTGGCTATCGGCGATCTGTCC
TGTCGGAACAACGCTCCGTTCTCTCGAGGACGCGTGGTAAAAAAGGCGGA
AACGCACCAAAGATCCTGCGTGGGTAGCCGTCGCCAACCATCGGCGATTG
CTGTGCTTTTGCTGCGCCATACCTTGCTCGCAGAGCAGCGCACGGTGAAA
GGATGAGCGGCTCGCCAGTAGGCTACAGTCATCGTGCACACACCACTAGC
TGTTCGCTGTTTTTTCCAACTGCTGCACACGCGTCCCAATACAACTGCGA
TTCTCTTCCGTTGAGCGCACACATGCACCAACATCACCAACATCACCAAC
ATCACCACCACCATTATAAAAAACCAACGAACCTACATGTGCCCAGGACG
GGGCCGGCGGCAGGCGCCGGCGGCAGCGGCGCGGCGGGGGCAAGAGCAAG
AGCAAGACTCGGGGTGGCGCACGCAGCCGCAGCAACAGTAAGACTCGAGG
TGGCGCACGCAGCAACAGCAGGACTCGACCTCCGCCCCGTAGCCGCAGCA
ACAGCAAGACTCGAGGTGGTGCACGCAGCAACAGCAGGACTCGAGCCGCC
GCCCCGTGCAGTCGCAGCAACAGCAGGACTCGAGCCGCCCCGCGCAGCCG
TAGCAACAGCAAGACCCGGGGGGGTGGCCCGCGCAGCCGCAGCAACAGCA
GGACCCCCGGCGCGGGGCGCCGTGGGGGGAAACATGGCGGCGGCGGGCAC
AGGAAGAAGGGCAAGAGCGGGAGCGGGAGCGACAGCGATTCGGTGAGAGT
CTGGGTCCCTTTCACTTGGGGATCTGTAGTAAACATGTCTCCTCGGCGAG
TCTCCGTTTCCGCGGCGGTTACACCCCCACACACGCAAGCCCTAGACATT
TTTACCCGAGGTGTGATGTACATACAGCAGTAGTGTACGCGGTGCAGCTG
TTGTCTCCCCCCCTGAGAAGACAATGACCCCGCCCACTATACGCTTGGTG
ATGTGATAGCCTGGTCCGGTGATAACCCAGCGTACTCCGTCCCGGCTTTG
TAGGGATTCGAGGTCAACGGTCTAGCGACTTATGGTACGTCATGCAAGGA
TAGGAGTAACCCTCCCCCCCTCCCCATTGGTCTTCCAGAACGTAGACGGC
GATATAGGGCTGTTGTCGATGAAGACGACAACTTCAAGTGTGATTGCGGC
TGGGAGTGCGAAGACCGCGTTCATGTAGTTGCGGGATGCTCGCTGTACAG
GAAGGAGAGGGAAGTGTACATGACTGAGCTGGAGAAAAAAGAGGGAACGT
ACAGGGGGATGTTTGAGGCATGGGACAGGGAGAAAAAAACCGTGGCTGTA
CTGGGCATGCCAAGTGGGTAGAAAAGGCGGGAAGTGATATTGGTAGGATA
GCTAGACAAGGGTAGACATTTTTGAGCCACCTTTGACAAAGTAGGAAGGA
ACGATTGGCCATCGGTGATCAATCCTGTGGAAATAATGCTCCGTTCTCTC
GAGGACGCGTGGTCAATGGTCTAAGGCATGCGAAACATAAGAGTACGCCC
CCCCTCCCCCCTATGTGCCTGTGTCGCAGTCGTCTTCTTCGTCTTCTTCT
TCCTCCTCCTCGGATGGAAGCCGGGCCGCCGTGAGGCGGGCTGTGAAGGA
CTGGAAGGTCCAGAAGAACATCAAGGGTCCCGTTGACAAGGGGGACAAGC
ACCTCAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8561:1527..5984+

>mRNA_E_fasciculatus_S2_contig8561.16691.1 ID=mRNA_E_fasciculatus_S2_contig8561.16691.1|Name=mRNA_E_fasciculatus_S2_contig8561.16691.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=744bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8561:1527..5984+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGGGTCATCGTGACCAACAGGGCGGCCGTGGACGAGACCGGCACCG
CGGCGCGCGCCGTGATGATGAACGCCACCCACCCGGGCACGGCGGGCGTG
GTGCAGGCCGTGGCGGCGGCGGAGGGCGGGCCAGGCGCGGCCACAAGGGC
AGCGGCAGCAGCAGCAGCGACCGCAGCCGCGGCAGCAGCACCAGCGACTA
CAGCAGCGGCAGCGAATCTGACGGGGCCGGCGGCAGGCGCCGGCGGCAGC
GGCGCGGCGGGGGCAAGAGCAAGAGCAAGACTCGGGGTGGCGCACGCAGC
CGCAGCAACAGTAAGACTCGAGGTGGCGCACGCAGCAACAGCAGGACTCG
ACCTCCGCCCCGTAGCCGCAGCAACAGCAAGACTCGAGGTGGTGCACGCA
GCAACAGCAGGACTCGAGCCGCCGCCCCGTGCAGTCGCAGCAACAGCAGG
ACTCGAGCCGCCCCGCGCAGCCGTAGCAACAGCAAGACCCGGGGGGGTGG
CCCGCGCAGCCGCAGCAACAGCAGGACCCCCGGCGCGGGGCGCCGTGGGG
GGAAACATGGCGGCGGCGGGCACAGGAAGAAGGGCAAGAGCGGGAGCGGG
AGCGACAGCGATTCGTCGTCTTCTTCGTCTTCTTCTTCCTCCTCCTCGGA
TGGAAGCCGGGCCGCCGTGAGGCGGGCTGTGAAGGACTGGAAGGTCCAGA
AGAACATCAAGGGTCCCGTTGACAAGGGGGACAAGCACCTCAGG
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