mRNA_E_fasciculatus_S2_contig856.16689.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig856.16689.1
Unique NamemRNA_E_fasciculatus_S2_contig856.16689.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig856.16689.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH7_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 2.750e-93
Identity = 160/170 (94.12%), Postives = 161/170 (94.71%), Query Frame = 1 
Query:   70 GSILDVAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERHAAXXXXXXXXXXXXXXXXXKAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGSAAVF 579
            GSIL VAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERH AXXXXXXXXXXXX     +A SAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGG AAVF
Sbjct:   18 GSILGVAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERHDAXXXXXXXXXXXXLGGG-EATSAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAAVF 186
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BLAST of mRNA_E_fasciculatus_S2_contig856.16689.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN9_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 3.380e-90
Identity = 156/170 (91.76%), Postives = 157/170 (92.35%), Query Frame = 1 
Query:   70 GSILDVAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERHAAXXXXXXXXXXXXXXXXXKAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGSAAVF 579
            GSIL VAREKD+GALRALCQVCS SGEVGEARKACVLVTIYRRESDLFALLLRER   XXXXXXXXXXXX     KAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDL TFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGG A VF
Sbjct:   19 GSILGVAREKDDGALRALCQVCSTSGEVGEARKACVLVTIYRRESDLFALLLRERXXXXXXXXXXXXXXXRGGG-KAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLVTFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAGVF 187
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig856.16689.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.750e-9394.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.380e-9091.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig856contigE_fasciculatus_S2_contig856:23651..26204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size585
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003620.1
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.6288583-CDS-E_fasciculatus_S2_contig856:23650..238181696842514.6288583-CDS-E_fasciculatus_S2_contig856:23650..23818Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 23651..23818 +
1696842514.6405995-CDS-E_fasciculatus_S2_contig856:25286..255181696842514.6405995-CDS-E_fasciculatus_S2_contig856:25286..25518Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 25287..25518 +
1696842514.6573722-CDS-E_fasciculatus_S2_contig856:26019..262041696842514.6573722-CDS-E_fasciculatus_S2_contig856:26019..26204Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 26020..26204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig856.16689.1prot_E_fasciculatus_S2_contig856.16689.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig856 23651..26204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig856.16689.1

>prot_E_fasciculatus_S2_contig856.16689.1 ID=prot_E_fasciculatus_S2_contig856.16689.1|Name=mRNA_E_fasciculatus_S2_contig856.16689.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp
MMAAAMQQQQQQQQQQQQQQPPTGSILDVAREKDEGALRALCQVCSASGE
VGEARKACVLVTIYRRESDLFALLLRERHAAPSSSSAAAAAAGRGGGGKA
ASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDL
ATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGSAAVFY*
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mRNA from alignment at E_fasciculatus_S2_contig856:23651..26204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig856.16689.1 ID=mRNA_E_fasciculatus_S2_contig856.16689.1|Name=mRNA_E_fasciculatus_S2_contig856.16689.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2554bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig856:23651..26204+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGCTGCCGCCATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCA
ACAGCAGCAGCCTCCAACAGGAAGCATCTTGGACGTTGCTCGCGAGAAGG
ATGAGGGCGCCTTGCGGGCGTTGTGCCAGGTGTGCTCGGCCTCCGGCGAA
GTAGGGGAAGCCAGGAAGGTGAGAGTCGTTGTTCGAGGCCAGTGTGTGCT
GCGTTTACCCGGTTTCGGGGTTATGGAGATGCCGGAGAGAGAGCGGGCGG
TCCGAGTGTGATGAATCCATGGCAATGGCCGTTGTGGGCGACCCAACTGC
TTGGCCTTTGGGCGTGCAAACCCGCAGCCTTGTCGCTCGTGTGAGGCGGA
CACGTTATTGCGTGAGGGATGAAGCCGAACATCCCCACATTCAACGGGAG
TCATTCGCGCTGTAGAGCCATGAACACATGGAATACACGCACAGGTTGCG
CCGTGTATTTCCTGCTCTCGTCTACAATGTACAGCAGTACATACATGTAA
TCGCCCCGCAAATTTAAATTTCACCGCTCTCCAGTCTCCACGTCTCAACT
GTCTACATACCATGCATTTCTCATTCTCCATACCTCCACACCAGAGAACA
CGCTACACAGCAGCAGTCACGTCCGCCGTGGTGGTAATGAATTTGCTACG
AACTTGACCTTGCAACCGCGACAACAGAGCAGCGGTTCGAGAGCTCAACC
AACACAGCTAGCTGCCTTTGAAGTCGTTGTTGTTGAACGGAAATTGTGTT
CGTGGGCAGACGCGATGATGATTATCTATCGCACAGAATTTGTAAAGGTG
TAGCTTCGTCGGCACTCCTAACTCCTCACACACAATTTTAATTTTTGCCC
TTTGTGCTGGTTATGGCATATTGGGCGATATGGTACCTCACCTCCGGCCG
TTGCTACAACCTATGGCACGTGACGCATGCGGAGAGGCACAGCTCAGCCC
ATTGGCGGAGTCGTGAGACACTGGGTTGTCTTCACATAATTGAAAGTCCC
GGTCTCCGCTGAATGAGTCGTGAGACACTGGGTTGTCTTCACATTAATTA
TTAATGTCCCGGTCCCCGCTAAAAGGTACCACATTACATGTCCGTATTTG
GTCCACAACTGATGCGGACATGCGGACGCCTTCTTCCGTGGTCACAAGCC
AACGACAACTACCCGAAAAAACAAAAAGCACCTAGAATTACGACATATTC
CTGTGGGACGGGTACTTCCCACAAGACACAGATTGGCGGATGGCCGAGAG
GAGGGACACGACAACGGAAGACACAGTACCTGACACAGGAAAAATCTTGC
TAATTTTCCTGCGTCCTGAAATCCGACGATGGAAAGTACGGAAGTATCGA
CTGTTTGGTTGATAATTGATGACAGTATGCCCCCCCCCCCCCCTCTCCCC
TTGACTCCCTCGCTTTCATTTTCTCTCACAATTCTCTTGCAGACTTGTGC
AGCCCCGTTTCAATCGACGCCCCGAACGGAGTGTTGAATCACGACCGGTG
GGCGCTACACCCCCCACCTACAGCAGTACCCGCCGACGATGCCACCTCTG
TCCGGCGGGTTTTAATACATCTGTCCCTACTGCCTGCTGACGCCCCACTC
CACGTTCGCCCGACCAAATAATGTTGCACGTAGCAGGCGTGCGTCCTGGT
GACGATCTACCGCAGGGAGAGCGACCTGTTCGCGCTCCTGCTCCGAGAGC
GGCACGCCGCCCCCTCTTCCTCTTCGGCAGCCGCCGCCGCCGCAGGCCGA
GGGGGCGGCGGCAAGGCGGCGAGTGCCGGGCTGACTGTGCTGTGCGACAT
GTCGCTCGATGACGGAGTTCACCTGGAGATGCAGAGCGCCCCCCTCGTCG
TCAAGGTCGTCAACACCTGTGAGTGTGTGTGTGTGTGCGTTTTTTTAGAG
ATTGTTCGCCCTCACTGACCCATGTATGCATGCAATTGAGGATTTGAAAA
CTCCTTTCCGCAGGCGATGTTTGTAGAATATTGTAGAAGGGTCCCAACGT
GATGGCAACTTTGACCCGCTGCCGAGGGCCGGGAGCTCGTCTTTTGTGAC
ATTCGTCAGCTAGGCGAGAAAGGCCAATGAGAGAGGAGTGTGACCTTAGA
GTCCGCATGCCCCCACACCAATAGGTGGCAGTTTGGGAGATGTGTGTTGG
CGCCAGCAGAATCCGGATCTATCAGAAGGTTGTCGGATCGTTCCGAGGAT
CGTTCTCTGGGCGACACTCCTGCTGTTGCGTGTGTCACCGACACCACACC
TTCTCTCACACACCATCCCGCGTGTAATGATGATCAATATCACTCCGCTG
CCCGTGAGGCGTACATGTACGCAAGGCAGAACCACACCCACACGATCGCG
TTATGTTTGTTTTTGTCAGGCGGCCAGAGGATAGCTTACCTGCTAGAGTT
CGGGCGAGCGATGGACCTGGCGACCTTCCAGCGAGCGTTTACCTCGGCGA
GGGGCTACTTCCGACAGATGCTAACTCTGCGTACTCTTGTGGCCGACTCT
TTCTGGCAGGGCTTTGCTTCTGGGGCAGGTGGGTCCGCGGCGGTTTTCTA
TTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig856:23651..26204+

>mRNA_E_fasciculatus_S2_contig856.16689.1 ID=mRNA_E_fasciculatus_S2_contig856.16689.1|Name=mRNA_E_fasciculatus_S2_contig856.16689.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig856:23651..26204+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGCTGCCGCCATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCA
ACAGCAGCAGCCTCCAACAGGAAGCATCTTGGACGTTGCTCGCGAGAAGG
ATGAGGGCGCCTTGCGGGCGTTGTGCCAGGTGTGCTCGGCCTCCGGCGAA
GTAGGGGAAGCCAGGAAGGCGTGCGTCCTGGTGACGATCTACCGCAGGGA
GAGCGACCTGTTCGCGCTCCTGCTCCGAGAGCGGCACGCCGCCCCCTCTT
CCTCTTCGGCAGCCGCCGCCGCCGCAGGCCGAGGGGGCGGCGGCAAGGCG
GCGAGTGCCGGGCTGACTGTGCTGTGCGACATGTCGCTCGATGACGGAGT
TCACCTGGAGATGCAGAGCGCCCCCCTCGTCGTCAAGGTCGTCAACACCT
GCGGCCAGAGGATAGCTTACCTGCTAGAGTTCGGGCGAGCGATGGACCTG
GCGACCTTCCAGCGAGCGTTTACCTCGGCGAGGGGCTACTTCCGACAGAT
GCTAACTCTGCGTACTCTTGTGGCCGACTCTTTCTGGCAGGGCTTTGCTT
CTGGGGCAGGTGGGTCCGCGGCGGTTTTCTATTAA
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