mRNA_E_fasciculatus_S2_contig856.16686.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig856.16686.1
Unique NamemRNA_E_fasciculatus_S2_contig856.16686.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig856.16686.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J880_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 9.420e-91
Identity = 256/398 (64.32%), Postives = 268/398 (67.34%), Query Frame = 1 
Query:    1 MSTPQRGGYSSRSKGKSRGRTXXXXXX-RAPPLRKKQKVGTPGGAGKGVQFEAALDPGTPAAAXXXXXXXXXXVGDDATVANGGGEGMETFSYDDVYNLATVTPVVTKRSVSRAAVESSATADEDTQQLRRPLQLGGKGKKRAAERQGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQAGPRSRPEVGKKPQRSSTAKSARKVPRYPQVLLETAGHAKARNMSDALKIAVSSEIKGLIRKRGKEPDCKAAVQACKESGMQILTHAKEICADLDPRPKVDLKEVRKALAEESQRYHAQIVSE 1191
            MSTPQRGGYSSRSKGK+RGRT   X   RAPPL+KKQKVGTPGGAGKGVQFEAA DPGTPAAA            D+AT A+ GGEG++TFSYDDV NLATVTPVVTKRSVSRA VES   +                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                    QQAGPRSRP VGKK +RSSTAKSARKVPRYPQVL ETAG+AK RNMSDALKIAV+SEIKGLIRKRGKEPDCKAAVQACK+SGMQIL HAKEICA LDPRPKVDLKEVRKALAEES+RYHAQI  E
Sbjct:    1 MSTPQRGGYSSRSKGKNRGRTTSSXSRSRAPPLQKKQKVGTPGGAGKGVQFEAAFDPGTPAAAGTAGLGRGGD--DNATGASSGGEGVDTFSYDDVSNLATVTPVVTKRSVSRAEVESGGGSAXXXXXXXXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAAAGNESKSDMSNISSNGHAAAVPAVAAEGGAGVPAQQPAVAEGGDADEASSAVVDPRSALSSSKEQQAGPRSRPNVGKKTRRSSTAKSARKVPRYPQVLPETAGYAKPRNMSDALKIAVASEIKGLIRKRGKEPDCKAAVQACKDSGMQILKHAKEICAGLDPRPKVDLKEVRKALAEESRRYHAQIAEE 383
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BLAST of mRNA_E_fasciculatus_S2_contig856.16686.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 5.990e-37
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:  952 MSDALKIAVSSEIKGLIRKRGKEPDCKAAVQACKESGMQILTHAKEICADLDPRPKVDLKEVRKALAEESQRYHAQIVSE 1191
            MSDALKIAV++EIKGLIRKRGKEPDCKAAVQACK+SGMQ+L HAKEICADLDPRPKVDLKEVRKALAEES+RYHAQI  E
Sbjct:    1 MSDALKIAVAAEIKGLIRKRGKEPDCKAAVQACKDSGMQVLKHAKEICADLDPRPKVDLKEVRKALAEESRRYHAQIAEE 80
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig856.16686.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.420e-9164.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.990e-3790.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig856contigE_fasciculatus_S2_contig856:3..3943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1191
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003660.1
Cds size1191
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.2097952-CDS-E_fasciculatus_S2_contig856:2..621696842514.2097952-CDS-E_fasciculatus_S2_contig856:2..62Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 3..62 -
1696842514.2199626-CDS-E_fasciculatus_S2_contig856:707..8341696842514.2199626-CDS-E_fasciculatus_S2_contig856:707..834Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 708..834 -
1696842514.2288735-CDS-E_fasciculatus_S2_contig856:1066..11761696842514.2288735-CDS-E_fasciculatus_S2_contig856:1066..1176Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 1067..1176 -
1696842514.2375057-CDS-E_fasciculatus_S2_contig856:2084..25141696842514.2375057-CDS-E_fasciculatus_S2_contig856:2084..2514Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 2085..2514 -
1696842514.245423-CDS-E_fasciculatus_S2_contig856:3479..39431696842514.245423-CDS-E_fasciculatus_S2_contig856:3479..3943Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig856 3480..3943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig856.16686.1prot_E_fasciculatus_S2_contig856.16686.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig856 3..3943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig856.16686.1

>prot_E_fasciculatus_S2_contig856.16686.1 ID=prot_E_fasciculatus_S2_contig856.16686.1|Name=mRNA_E_fasciculatus_S2_contig856.16686.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=397bp
MSTPQRGGYSSRSKGKSRGRTTTTTTTRAPPLRKKQKVGTPGGAGKGVQF
EAALDPGTPAAAAATAGRGGGGVGDDATVANGGGEGMETFSYDDVYNLAT
VTPVVTKRSVSRAAVESSATADEDTQQLRRPLQLGGKGKKRAAERQGAAA
EGTDTEEEYESGGARRRKKRKQEAAAAAAAAAAAATATNAAAIAAALPAA
AALPAAAAAGGESKSDISNNSSNGNAAAVSAATAEGGAGAPAQQPAVAEG
GDADEAAAAVVDPRSALSSSKKQQAGPRSRPEVGKKPQRSSTAKSARKVP
RYPQVLLETAGHAKARNMSDALKIAVSSEIKGLIRKRGKEPDCKAAVQAC
KESGMQILTHAKEICADLDPRPKVDLKEVRKALAEESQRYHAQIVSE
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mRNA from alignment at E_fasciculatus_S2_contig856:3..3943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig856.16686.1 ID=mRNA_E_fasciculatus_S2_contig856.16686.1|Name=mRNA_E_fasciculatus_S2_contig856.16686.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3941bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig856:3..3943- (Ectocarpus fasciculatus EfasUO2)
ATGAGTACCCCTCAGCGAGGAGGCTACAGCAGCAGGAGCAAGGGCAAGAG
CAGGGGGAGAACCACCACCACCACCACCACCAGGGCTCCCCCGCTCCGAA
AGAAGCAGAAGGTGGGGACGCCAGGCGGGGCGGGGAAAGGGGTCCAGTTT
GAAGCCGCTCTCGATCCGGGCACACCAGCAGCAGCAGCAGCAACCGCCGG
GCGCGGCGGCGGAGGTGTTGGCGACGACGCGACGGTTGCCAATGGCGGAG
GCGAAGGCATGGAAACGTTCAGCTACGACGACGTTTATAATCTCGCGACG
GTCACGCCGGTGGTGACGAAGCGGTCGGTGTCGAGAGCGGCAGTCGAGTC
GAGTGCCACCGCGGATGAGGACACGCAGCAGCTGCGTCGGCCGCTACAGC
TGGGCGGCAAGGGGAAGAAGAGGGCGGCGGAGCGGCAGGGGGCAGCGGCC
GAGGGCACCGATACGTGAGTGAGGAGAGGAGAGGGTTTGATTCGGACGAG
TAGCAGTTGCTGCTGTTGTTAGCGTTTCGTGTACCGTCGAGCGAAGTTTC
ATGTCTCCATGACGCGAAACGCTTCAACGGGGCCGCAGTCGCGACCGTTA
CGAAGCCAACATGCGGGTGAGGAGCATCCTGCGCGCGGAACAGCAGTAGT
AAATCCACAACGGCATGAGCAACAATCCTGCCTTTCGCGTGTATGATACC
GGTGGCAATTGACGATGTGTTCGACCTACCGCTGTGACATACCTCACTTT
TAGAACTCGGTGAGTGAGAAGTTGTTGCAGCAGAGCCTCTGGACGGCAGG
TGAATCGTAGACCGGCCGGTGTTCGGGCAACCCACTTGAAGGTTTCAATC
GAAACATGTCTCTGCAGCAGTGTACCACGCTAAAGGCTACAGCTCGTACA
GCAGTGTCTCCAACAGGTGTCGGTGTACAATTGCCGCACTGCGGCAATGC
CAAAAACTGAACAAGGGAACGATTGGTGTGTGTACAAGAGACGCCCGAAC
AGCGGTACCGCCGTGGAAGCTCGTACTTTCGCCAACAGGCAGTTCCCGGT
TGCTGCTCTCTACGCTTGGTCAGGCAACAGACAGCAGCAGCCCGTTTCAT
GAACCCTATTCAGTTCGCACTTCGTTCCCTCCTGGGATGGGCAGAGCTCC
ACACTGCACCAGGCGGGTTACCGTAACAGCAGTAGTACTTGCAAATGGCA
AGCAACTCCATTTTATAGAGCGTCTAGATATCCATGCTGGACGGAGACGG
CGGCGTTTTTGAGCTAGAGATTATCATTTTCAGTAGTAAATCCCACCGTA
TACTCGGTTGCGTCAACGTCCCGTTGGCGCGGAAGCACCCACGGCTTCTA
ACGCTCGCACGTTTTGCCTATCGCCGCTTTTTGTCTCGGCTGGTGTCCCC
TTTCGTTTGGTTTTGCGGCCGGCGCGCAGAGAGGAAGAGTACGAGTCAGG
GGGAGCAAGGCGCCGAAAGAAGCGAAAGCAGGAAGCAGCAGCAGCAGCAG
CAGCAGCCGCCGCCGCCGCCACCGCCACCAACGCAGCTGCAATAGCAGCA
GCGTTACCAGCAGCAGCAGCATTACCAGCAGCAGCAGCAGCAGGAGGCGA
AAGCAAAAGCGATATCAGCAACAACAGCAGCAACGGAAACGCCGCGGCGG
TATCGGCGGCGACTGCGGAAGGAGGTGCCGGCGCCCCGGCGCAACAGCCG
GCCGTCGCCGAAGGGGGGGACGCAGACGAGGCGGCGGCAGCGGTGGTAGA
CCCACGGAGCGCGCTGTCCTCCTCAAAGAAGCAGCAAGCGGGGCCAAGGT
CACGGCCGGAGGTTGGCAAGAAACCGCAAAGATCGTCTACAGCGAAGTCG
GCTCGTAAGGTGGGTTAGTTTTTGTCGATTTACGATACGTTTTACTCCAC
TTTCTACCCCCCGTCCTCTTCAGACCTCAACGCAACGAACAACATCGTAC
TCGTTTCATTGGTCATCGTACTCGTTTCATTGGTCATCGTACTCGTTTCA
TTGGTCATCGTACTCGTTTCATTGGTCATCGTACTCGTTTCATTGGTCCT
GCGAGTGGTTATTGTTTTGTGTTTCACCGAAAAAAGCACGACCTTTATCC
AATACCTCCTCTTCCCTGCAGCAGTACTCCTCAAATTGGCCGAGAAGAAC
TTCCGGGGTCGAAAGGAACGTGTGACATGAAACGTAGGAAAACCAAAACC
CCACCACTCGCGAACGCATGAAAGTTCCGGAAATAACTACTGCTGGAGTC
CAGACCGGCATAAACCAGAGTCATGCAAGGGAAACCCGCTGATAGGTTGG
AAAGCCTCTCGCCCGACGCTAGAGATAGGCCACAAGCAAATCACACTCAA
GGAGAAGCGCTACAAGTAAGAGTTACAGGGAGTCAATGTTTATTTTCGTC
AGACAAGGGGATTCACCCATGTTTACAGGAATTTTTCAGCGGTAGAGAGC
TGACTGTGACAGAGCCCAAGCCAGTGAGACTTTTTCCAAGTGGAGGAGGT
GCGCGTGAAACACCGACCGCTATTACACGGGGCCGCACACATGAAAAAAA
TAGACTTGTCCTTTTGCTCCAACAACCGCCGGCGCGCACACACACCCTTG
TCCGAACCGCTCTTCGTTCGCGCCCTCCATCGGGCCATATTTGTCACTTG
CTGGACTACTGCTGTGGTGCCGCTTGGAAGCAAAAGTATCGTCTACAAGA
CCAAGACATGTATGTTGTTCGCCGCCGCGTGGTTGCCTGCATGTGTGCCG
TGTGGGGCGGGTCGCAGGTGCCGCGGTACCCGCAAGTGTTGTTGGAGACA
GCGGGTCACGCGAAGGCACGGAACATGAGCGACGCCCTCAAGATTGCCGT
GTCGTCGGAGATCAAGGGCCTCATCCGGTGGGTAGTAATAGTGTCGTTGC
CCCTCGAGCTTTGTAGTACTGTATATGTACGGTAAGAATACTTCGCGCGC
ACGAACACTTGCTTCCGCCCGCTCCGTCGCTGTCACGACTTGTGGTGTGT
TGCGAGTGCGTGCGGCCAGCCACCCGTGGACTCCGTTTTGTTTAGTCCTG
CTTCCATCGTTTTTTCTTATTTCTTCGGTGTACGTGTTTTTTCCCGTTGT
GTTTCCCAGGAAGCGCGGGAAGGAACCCGATTGCAAGGCCGCCGTGCAGG
CGTGCAAGGAATCCGGAATGCAGATCCTCACGCACGCGAAGGAAATCTGT
GCCGACCTGGACCCACGACCGAAAGTTGACTTGAAGGTGGAGAAGGGGAG
ACAGGCGTATGTTGTTGTTGTTGATGGTTTTCGTTGTTGGTGTTGATATT
GTTGTTGTTGTTGGTGGTGGAGGGTTCTTGGCGCTAAACGCCGTTCTCAC
CTTTACTCGTTACCTGCACAATACCCGGAACGCTCTGAAACAAACGAGTT
CCTTCGTCAAAGGTGGAACCCAAATGCGTAGCCACTAAATAGCAGTAGTT
ACTGACAATGCGGTCAAGGTGAGGAGTCTTCTGGGTACTTTTGCGTCAAC
CAAAAGTCTTAGCCAAGTGTCGACTTGAATGTGGGAATGCAGACAGGCTT
GCGTTTGTTGTACCCAGTTGTTTTTTTATACCGTCTCTCCGTGGTACATA
CCCACGCAAGCATGTGTAGCCATGGCACTAGTACATGTCATGTATGCGGG
ATACGGCTATTCTTTGTTGACGGCACGTCGGGTGATTTCCCGGAGAGCCG
GAACAAATTCAGCCATGCTTGGATTTCGACTTACTTCCTTCTTCGTTGCC
CGCGGTTGGCCATGCTGCAACGTAATTTTGCCGCGCCACACATTTTGCGA
TCCCGCTGCACGTGGAATATTCACGTTGTTCCGCACATTAACCCGCCTCC
CGCGCGTCGAAAATTCACCCCCCGGCCGCAGGAGGTTCGAAAAGCTCTTG
CTGAGGAGAGCCAGCGCTACCATGCCCAGATCGTGAGTGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig856:3..3943-

>mRNA_E_fasciculatus_S2_contig856.16686.1 ID=mRNA_E_fasciculatus_S2_contig856.16686.1|Name=mRNA_E_fasciculatus_S2_contig856.16686.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1191bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig856:3..3943- (Ectocarpus fasciculatus EfasUO2)
ATGAGTACCCCTCAGCGAGGAGGCTACAGCAGCAGGAGCAAGGGCAAGAG
CAGGGGGAGAACCACCACCACCACCACCACCAGGGCTCCCCCGCTCCGAA
AGAAGCAGAAGGTGGGGACGCCAGGCGGGGCGGGGAAAGGGGTCCAGTTT
GAAGCCGCTCTCGATCCGGGCACACCAGCAGCAGCAGCAGCAACCGCCGG
GCGCGGCGGCGGAGGTGTTGGCGACGACGCGACGGTTGCCAATGGCGGAG
GCGAAGGCATGGAAACGTTCAGCTACGACGACGTTTATAATCTCGCGACG
GTCACGCCGGTGGTGACGAAGCGGTCGGTGTCGAGAGCGGCAGTCGAGTC
GAGTGCCACCGCGGATGAGGACACGCAGCAGCTGCGTCGGCCGCTACAGC
TGGGCGGCAAGGGGAAGAAGAGGGCGGCGGAGCGGCAGGGGGCAGCGGCC
GAGGGCACCGATACAGAGGAAGAGTACGAGTCAGGGGGAGCAAGGCGCCG
AAAGAAGCGAAAGCAGGAAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCG
CCGCCACCGCCACCAACGCAGCTGCAATAGCAGCAGCGTTACCAGCAGCA
GCAGCATTACCAGCAGCAGCAGCAGCAGGAGGCGAAAGCAAAAGCGATAT
CAGCAACAACAGCAGCAACGGAAACGCCGCGGCGGTATCGGCGGCGACTG
CGGAAGGAGGTGCCGGCGCCCCGGCGCAACAGCCGGCCGTCGCCGAAGGG
GGGGACGCAGACGAGGCGGCGGCAGCGGTGGTAGACCCACGGAGCGCGCT
GTCCTCCTCAAAGAAGCAGCAAGCGGGGCCAAGGTCACGGCCGGAGGTTG
GCAAGAAACCGCAAAGATCGTCTACAGCGAAGTCGGCTCGTAAGGTGCCG
CGGTACCCGCAAGTGTTGTTGGAGACAGCGGGTCACGCGAAGGCACGGAA
CATGAGCGACGCCCTCAAGATTGCCGTGTCGTCGGAGATCAAGGGCCTCA
TCCGGAAGCGCGGGAAGGAACCCGATTGCAAGGCCGCCGTGCAGGCGTGC
AAGGAATCCGGAATGCAGATCCTCACGCACGCGAAGGAAATCTGTGCCGA
CCTGGACCCACGACCGAAAGTTGACTTGAAGGAGGTTCGAAAAGCTCTTG
CTGAGGAGAGCCAGCGCTACCATGCCCAGATCGTGAGTGAG
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