mRNA_E_fasciculatus_S2_contig8559.16685.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8559.16685.1
Unique NamemRNA_E_fasciculatus_S2_contig8559.16685.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8559.16685.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.390e-29
Identity = 67/135 (49.63%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:    1 MRDFLHLTKQEYNDDHLGHTLASSGHIK-------------------------------------------------------------------DLCGGRVQDLDILRLEWSGFLLDNLNESRIHHQCFGEDNH 204
            MRDFLHLTKQEY+DDHLGHTLASSGHIK                                                                   DLCGGRVQDLDILRLEWSGFLLDNLNESRIHHQCFGEDNH
Sbjct: 1387 MRDFLHLTKQEYDDDHLGHTLASSGHIKVSEASEFFSPMVVQYDQRQMQWQDRLDAHNGVVVSDLGRFIPPTDAVRAADVLRRRQQQQPQGVILQDLCGGRVQDLDILRLEWSGFLLDNLNESRIHHQCFGEDNH 1521
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8559.16685.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.390e-2949.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8559contigE_fasciculatus_S2_contig8559:2723..6294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size207
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_000570.1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.1547399-CDS-E_fasciculatus_S2_contig8559:2722..28451696842514.1547399-CDS-E_fasciculatus_S2_contig8559:2722..2845Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8559 2723..2845 -
1696842514.1664217-CDS-E_fasciculatus_S2_contig8559:5591..56481696842514.1664217-CDS-E_fasciculatus_S2_contig8559:5591..5648Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8559 5592..5648 -
1696842514.1776173-CDS-E_fasciculatus_S2_contig8559:6267..62941696842514.1776173-CDS-E_fasciculatus_S2_contig8559:6267..6294Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8559 6268..6294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8559.16685.1prot_E_fasciculatus_S2_contig8559.16685.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8559 2723..6294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8559.16685.1

>prot_E_fasciculatus_S2_contig8559.16685.1 ID=prot_E_fasciculatus_S2_contig8559.16685.1|Name=mRNA_E_fasciculatus_S2_contig8559.16685.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=69bp
MRDFLHLTKQEYNDDHLGHTLASSGHIKDLCGGRVQDLDILRLEWSGFLL
DNLNESRIHHQCFGEDNHH
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mRNA from alignment at E_fasciculatus_S2_contig8559:2723..6294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8559.16685.1 ID=mRNA_E_fasciculatus_S2_contig8559.16685.1|Name=mRNA_E_fasciculatus_S2_contig8559.16685.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3572bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8559:2723..6294- (Ectocarpus fasciculatus EfasUO2)
ATGCGGGACTTCCTGCACCTCACCAAGGTAAGCGATGATGTCCCCTGACG
TTTTATTCCCTTGGGATGGGTATTGTTGTCCTGTTGCTTATTCCCCTTTG
CCCTACTACCCTAGCCCTAGGTCCCGTCTTGGTTTTGGTTGTTGTACTCC
TCGATCTCACTCGTCGTTGTGTTGTGTTGGCTTATGCACTAACCCATCCA
TGTATATATGCATGTGGCGCGAAGGTTCAGCCTTGTTTGCAGCCGATACG
AACTCTCTGCTTGTTATTCTTCGGTTGTTGTTGATTGCTGATGACGATAT
TTCGTCCGCTTGTACGCCTTATTCCTCGACGATATGTCTCTGTCTCGCTC
AGACCGCATCGCATGTGCCGCGGTGTGGCGGATAGCGGTCCCGTCCGAAC
GCTAGCCCTCAAGCTTTATAGTTCTAACCCAAAGTCACCCTACACCTGAG
AGACTCCGCAGCAGCCAGAGTGTGGACAGAGAGCTGTGTTAGCCTAACGC
AACTGCATCTCTTTACCCTTACCCTCCAAAATGCTAACCCAAAGTCATGC
TACACCCCGGAGACTCCGTAGTAGCCAGAGTGCGGACAGAGAGCTAGTGT
GTTAGCCTAACGCAACTGCATCCCCTTTCCCCTCACCCTCGAACAGCAAG
AGTACAACGACGACCATCTCGGCCACACCCTCGCTAGCTCCGGACACATC
AAGGTGACTGACGATACTATAATAGCGTTGTTCGTCTTGCCACAATTACG
TTAAGGCTGGCGTTCTCGTTGTAAGGGTTGGCGTTTGCTCTTGTTCGAGG
CGACCCTCATCATGGACCGCCTGGGTCTGTTTGTTCGTCATTGCCATCGC
CACCACCGCCTTCCAGAACCAATCATAGTATTGGTGGCAACCCTAGGGCA
TAGCGCTACAATTGTTCCGAAGAAGTATACACGCCGACTGGCGGATTGCT
TAGTGAAAACGATGCTCGCATATTCGTACTTCGTGGTACCTGTCGAGAGC
GCTTGTTCGCGAGCTTAGGGTCGGGGTGAAGCCCTTCGTGCCTTGACAAC
GGAGAAATGCACCGCAGATGGGGTGATGCTGCGTAGCCCCTCGTCGCAGC
TCTTTGTTAGGTCCGTATGTAGAGGGGGCGAGAGACGGTGGCATATCGCA
AAATGATCCGACGACGAAAACAAAGGTCAACCTCGCATCGCCATGTCTGG
AGGTTGTTGGGTCAATCAAGTCTTGTTGGCGGGCGAAGAGGCACGGTGAA
AGTTGTGACCTCAGTACTGTCACTAATATCCCTTCATTCCCATGTTGGTA
CGTGTGCTCAGGTGTCAGAGGCGAGCGAATTTTTCTCTCCGATGGTGGTA
CAGGTGCGATCGACTTTTTTTCCGGATATGTTCTTAAGCATGTCACTTTG
CAAACTTCGGTGTTGTTGTTGTTGCTATTGCTATTGCTCTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGATGCTTTTCGCCACCGGCAGTGT
CGGCCTGCCGCACAGCCGTGCCCCTTTCATTGAAAAGCTCCCACCCGGGG
TCACACACAAGAACCCCCCCCCCCCCAGACGAAGATATATGACTGTAGAC
GATGAAGAAGACGACAAGTTCAAGTGTGGTTGCGGCTGGGAGTGCGAAGA
CCGTGTTCATGTAGTGCCGGAATGCTCGCTGTACAAGAAGGGGAGGGAAG
TGTACATGACTGAGCTGGGGAAAATAGAGGGCACAAGGAGATGTTTGAGG
CATGGGACAGGGAGGACAAGACGGTAGCTGTACTGGGGCATGACAAGTGG
GTGGAAAAGGCGGGAAGTGATACTGGTAGGAGGGTAGACTAGGGAAGACA
TTTTTGAGCCACCTTTGGCAATGTAGGAAGGAAGGAAGGAACGATTGACC
ATTGGTGATAGATCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGT
GGTCAAGGGTCTAACGACTAAGGCATGCAAAACACAAGAGTACCCCCCCC
CCCCCCCCCCCCACCCAACACACCCAGCCCCAAACGCAGCGGGCAAGACA
GGGTCAACGGAAAAAAAACAAAGGCAAAAAAAAAACAAGAGTTCCCCCCC
CCCCCCCCTACCAACACAGTACGACCAGCGCCAGATGCAGTGGCAAGACA
GGCTGGACGCTCACAACGGGGTGGTCGTTTCGGGCTTGGGGCGGTTCATC
CCTCCCACGGACGCCGTGCGAGCCGCGGATGTGTTGGTGAGTTTCGTCTA
GATGTAGTAGACGCGAAGAAACGGATGATGGAAAAAGCACACTTTTAAGG
TTATTCTCAAGGATTTGGTGAGTCCTCCTGCGGCGTGGGCTCGTCGTATT
TTGGGGCGAAAGTGAGAAACTATTTAAAACGGTGGGGACGTCTTGTCTAT
TGTGCAAAAGTCGCCGCTTGCCACGGTGTTTTTTTTTTCTTATATGACAA
CCACGAAAGCGGAGTCTTCATTTTTGACGTAGGAAGCGACTTCACAAGGG
TTTTGTACGAGCGGCTGCCCACCGCCGCGGGGGGGAGTAGACGGAAGGAA
CACAGAGAATGAGCTTTTAACACATGTCTCATTCGGGAATTAAGTTTTGG
CTGCTGTACCCCATCACGCAGAGCGGATAGAAATAGGTACCCTACGGCAA
TACCTGTACGCTGTATTCTGTCTAAAACCAGCTAAAAGCACTACCTATAC
TGAAACCAGTACAGTAGTCGCCCCCGTGCTAAAAACAAGACACAGGTAAC
CTATACTAAACCTGTACACGTTGGGGACCCATATCATTGAAGTGAGAAGT
GTACCAATGCCAACGCTACTGAAAGTATTGATCACCCACGGAAATCGCTT
GGTCAGGTGACATAAAAATAAACTATCATTTTATCGTGAATGCGCGTATC
ATCTAGTAGAGCAAGGTTGGTGATCGTGACGGCCCTGAAGTAACTGTAGG
TGCAGAGCCGTTTTGCATCGTTTTCCCCGTAAACAAGGAGCAGAGGTGCA
AGGATCGACAGTCGTTTGCCTTTTTCATTGGTGGTCTCGAATAATTATTT
TTGTCGAAGAGAAAACAGCCCAACAACCGCAGACCGCCTATGTAACACGA
TTGGCATCAGGCTTGGCCCCGACACACACTGTTCTGCGTGAATCGCGCAA
TTCTGCAGCTCCCCTGGTAGGTATTGTAGCGCTGTTGAACAACAAGCCCA
CGAACCACGGCCGCCAAACACGATTTGATGTGGTTGGTTCCGGCAGATAC
AGAACCAAGTACAACATATGCATCTGATTCTCCATGAAATGACTGCGCGA
ATCGCGGAAGGCGACAGGGAAAATAGGGATTGCTGTTACGAACAAGCCTA
CCAACCCCACAGCCACCAATCACGATTTTATGTATTCGGTCCCGGCGGAT
GCCACAACAACAGCAATAAACAATTCACAACCACAATGTGTTTCTGCAGG
ACTTGTGCGGCGGTAGAGTGCAAGACTTGGACATCCTGAGGCTGGAATGG
AGCGGGTTTCTGCTGGACAACTTGAACGAGTCGAGGATTCACCACCAGTG
TTTCGGGGAGGACAATCACCAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8559:2723..6294-

>mRNA_E_fasciculatus_S2_contig8559.16685.1 ID=mRNA_E_fasciculatus_S2_contig8559.16685.1|Name=mRNA_E_fasciculatus_S2_contig8559.16685.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=207bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8559:2723..6294- (Ectocarpus fasciculatus EfasUO2)
ATGCGGGACTTCCTGCACCTCACCAAGCAAGAGTACAACGACGACCATCT
CGGCCACACCCTCGCTAGCTCCGGACACATCAAGGACTTGTGCGGCGGTA
GAGTGCAAGACTTGGACATCCTGAGGCTGGAATGGAGCGGGTTTCTGCTG
GACAACTTGAACGAGTCGAGGATTCACCACCAGTGTTTCGGGGAGGACAA
TCACCAC
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