mRNA_E_fasciculatus_S2_contig855.16679.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig855.16679.1
Unique NamemRNA_E_fasciculatus_S2_contig855.16679.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig855.16679.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J7_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.460e-78
Identity = 134/154 (87.01%), Postives = 145/154 (94.16%), Query Frame = 1 
Query:    1 MGGQQSRRVEDTSAGEPDSWMNRVAVKPSENLVKQLQRQQQYQVSRVEPDPSAPEIQSNQQEENQAIRSERELRREEDNNRMLEVLAAKDAETAHLSKIVSSVVIPDIPAGQQMAVCDEESQAVVKCYLSRRERGNELDCGKLVDILEECASSQ 462
            MGGQQSRRVEDTSAGEP+SWMNRVAVKPSENLVKQLQRQQQYQVSRVEP+PSAP+ QS QQE++Q  R ERELRREED+ RM+EVLAAKDAETAHLSKIVSSVVIPD+ AGQQMAVCDEESQAVVKCY  R+ERGNEL+CGKLVDILEECAS+Q
Sbjct:    1 MGGQQSRRVEDTSAGEPESWMNRVAVKPSENLVKQLQRQQQYQVSRVEPEPSAPKSQSRQQEDSQVFRRERELRREEDDTRMVEVLAAKDAETAHLSKIVSSVVIPDVSAGQQMAVCDEESQAVVKCY--RKERGNELNCGKLVDILEECASTQ 152
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig855.16679.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.460e-7887.01protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig855contigE_fasciculatus_S2_contig855:21420..26590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1350
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_002320.1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842513.5517173-CDS-E_fasciculatus_S2_contig855:21419..215121696842513.5517173-CDS-E_fasciculatus_S2_contig855:21419..21512Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig855 21420..21512 +
1696842513.5643888-CDS-E_fasciculatus_S2_contig855:23577..237151696842513.5643888-CDS-E_fasciculatus_S2_contig855:23577..23715Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig855 23578..23715 +
1696842513.575445-CDS-E_fasciculatus_S2_contig855:25471..257051696842513.575445-CDS-E_fasciculatus_S2_contig855:25471..25705Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig855 25472..25705 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842513.5860426-UTR-E_fasciculatus_S2_contig855:25705..265901696842513.5860426-UTR-E_fasciculatus_S2_contig855:25705..26590Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig855 25706..26590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig855.16679.1prot_E_fasciculatus_S2_contig855.16679.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig855 21420..25705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig855.16679.1

>prot_E_fasciculatus_S2_contig855.16679.1 ID=prot_E_fasciculatus_S2_contig855.16679.1|Name=mRNA_E_fasciculatus_S2_contig855.16679.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=155bp
MGGQQSRRVEDTSAGEPDSWMNRVAVKPSENLVKQLQRQQQYQVSRVEPD
PSAPEIQSNQQEENQAIRSERELRREEDNNRMLEVLAAKDAETAHLSKIV
SSVVIPDIPAGQQMAVCDEESQAVVKCYLSRRERGNELDCGKLVDILEEC
ASSQ*
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mRNA from alignment at E_fasciculatus_S2_contig855:21420..26590+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig855.16679.1 ID=mRNA_E_fasciculatus_S2_contig855.16679.1|Name=mRNA_E_fasciculatus_S2_contig855.16679.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5171bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig855:21420..26590+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCGGCCAACAGTCAAGGCGGGTAGAAGATACATCCGCAGGCGAACC
GGATAGTTGGATGAATCGCGTTGCCGTCAAACCTTCCGAGAATGTGAGGA
TTGATAACACGTCCTAACAAAACTGCTTTTAGTTTCTTGGTCAACGTTTT
TGTCTTCTTTCGTCCGCGCTCGTGTTGCGATCACGGATACCTCTGTCATG
ATGTGCGGCAGTCTAGTTCACCTCCGCGTTGTTTTTATTCTCCGGAAGGC
GCGACTTGTATCGTGCCAGGCGGAGTCCAACTTCTATCTCTTCAGGTGTC
AACCGCCAATCGATATAACCGATCCAACCTCTGCACATTCTATACTAAAT
ACTCCGAGTAGGTTAGATGTCTTGCTTTCGTTCTACTCCCGTTGGCGTGC
ACGTGCGTTTGAATTTATCAGCCATGGTCGTACATCTTGCGGCAAAGTGT
TACCCTTTGGGACTCTCATGTGATAGTCAGATCCCATGGTACTGACCCCG
AGGTTCAGGAAACGAGTTTCCGCTGTGTGTCCCGGCCTGGAACATGATTC
CAGTGGATGATACCGTCAAAAGCTGCTACACATCCTTTGAGGAGGAACCT
ACACTTGACAAATGTATCTGAACCATAGTCCGGACCCAAGCCATAACGGG
CACCATTTCCTCGATTGCACTCAAGGCAGGTGCAGGGGTATACCTTCGGT
TGTAGATCTGAGGAGTTTGGGACTCATCAAGAGGCTGGAATAGCGTGATT
CTCCGATAATAATGTAGCTACCAGCAGTCGAGCCATGTCGTCGCGGTGTC
AGCAGAGGTGCAGAGCAATGCGCACCGTGCAGACCGCCGAGCCTCAGGTT
CGGAAAGTTGGCACGCACATACATACACATGCACGGCATGCGGGCTTTTC
AAACAAGGAAAATCCAGGAAATATATACAAAAATATACCAACTCTTTTTT
TGTGAACAGCCCAAAAAAGCTGAGGCAACAACAGCGATGTACATGTATAC
AGCTGGCCAGTCCTACGTAGTATCATGAAGACACTGGTGTGGTAGTTGGC
GCTCTCTGCGTGCACGTAATGAATCTTACGTGTAGAGGTGCAGAGAAGGA
TGACCTCCAGGTGCGAGGGTCGGATGCCCTCAAGACGTCATCTGCATGTC
TGCATGTGTATGTCATGTGGGCGAAACTTGATGAACCGAACAAATTGTTC
CATGAGGTATTCTTGCAGCCAAATTCCTACAAAGGATCTTTATTGACGCA
AAATCTCGCGCCGACCTCCCAACATGGCGCCAACCCTTTCAGGTCGACAT
GCACAATCTACGAACATCTAACTCCGCTGTGTATTGTTTGCTTTTCGCAT
GTTCTTGCATCACTCCCTGCCGCAGTGCTCTCTTTACCCCTCTCCGGCGT
GTGGCCTTGTATCATTTGATTAATTGGTTCGGGTCCACGTTTCGGCTCTA
CAGATTACGGACTTCCCTCAAGCGTGGACCCGATGTCGTCCACACTTCCA
GTAGCGGGCTGAGCGTGCTGACTTTTCCTAGCAGCTCAGCGGGAATAGGT
TACGTTCATGGTTCAGGTCGGGACCCCGCACAGGGGGAGATCCTATTCGA
CCGCTTGCGGTGAACGTTCCATATTTTTGTGATGGAGTGCTCGTGTAATT
TATCCAAATTCGTCCTGTAAGATACACTTCTATTTAGAACCTCTAACTAA
TCTCCATCCCCCAACCACTTTTGCAGTCCCTACTGCTCCTCTTTTGGTCT
GTGTGCTCCAATTGGTGGCTTACGGATGCTCTCGAAGCCAAAGTTCCATC
CTGATAAGCGTGGAAACAGCGTTCATGGTTCGCATGTGCATGCTGTTTAT
GTCGGACCCTACTGCTGTAGTTTGCGTCCTGCAAGGCGGTGTGCACGAAC
GCGTAACTTGTTGTGTCATTGTCACCAGTTTTTCGTCGTACACGGTGATG
CTCCGCGCGTTGCTTGTCCTCTTTGCCCGTGAAGAGGTGTCCGAGTTTCC
CCCGGACCTGTCACTCTTTCACCATTCATTTCCGCCCCCAATACGTCAAC
TGTCGTTGTGTAGTGGGTCACAACATCGAGCACTTTGGCCACACATACAA
GAGAGGCAAGCGTCAAACCCTCGAATGGCCTCGCGTGCGTGAATATCCAC
ATTTGCAGCTCGTCAAACAGCTTCAAAGGCAGCAACAGTACCAGGTCAGC
AGGGTAGAACCGGATCCTTCCGCCCCCGAGATTCAATCGAATCAGCAGGA
AGAGAACCAGGCAATTCGGAGCGAACGAGAACTTAGGAGAGAAGAGGTAA
GTGCCGGCCCAAATGATGCACGTGTATGCACTGCGCTGTTGTAATTTTGC
CACCGTGCTACAAATATTGTGAAGTTGTATCCACAGTGAGCAGGGCCGAT
ATCGGTCGCAATGCGACTTGCGAAGAGTCCTTTCACTGCACGAAAGGATC
CGTGTCTGCTGAGAGCAACGACCGTATTGCTGTCGGAATCAAGAGATTGC
GTAAGCGTTGTGAGTTGGTTGCTTCAAGTCTCTGGCGAAAGATACAGGAG
CTCGTTCCCAGGCTGTTGTTGCATATGCTTCGTCTCCACCCTCTCGATCT
CTCCGAAAATAAAGCCACAGGGGTGGATCAGTGTGTCCCAACCACCCCAC
GGCACCCTACTGGATAATCGGAGAGATGGCACCACCGCGCGATAAAGGAT
CAACAACGAGATTATTTAACTCCAATTTCGAAGGGGATCGGAGAGATGGC
ACGGACGTACGCCATTTACTTTTGCCGACTCTTGCACTCCCATTTCCGGC
CGGCCTGAGGTTACCTGCTATCTCGAGTGACCCCGGCATCTTTTGAGTTG
CGACAGACAACACGCGTTCGCAAGGCTGTTTCGTCGCGCTCAATGTTTTG
TCAGGGGTCCACCGCTGATGTGTTGGCGGTGGTCTAGTCAAGGAGGAGCT
GTTTTTGTTGCATTCGGCAAACCATGTCAACCTCACCACCAGGCACCGCA
CGCTGCAGAAACACACATGCCGGAACCTACCGATACACTAGACTGCTACA
TGCCGCCGCCGTATTGCAAACACATGGCTGAAAGCATACCGGACTTCCAG
GGTATATTTATGGCACAGCAACTTTGATTTGAACCGACGTCTTTCCAACA
ACCGGTGTATGAGGCTGGTTCATTATATCAGCGGCCGCACCAGTGGTGAG
CGGAAAGTGGGCTCGCTCATTGCTGTGTTTCTGCTTAGTCTTCTGCGTAT
GTCAGTGCATCCTGCAGCAATCTCACCACTTCTGCCTAACAAAGCAAGGC
TTTTCAGTTCCGGGCAGTGCACAAACGCGAACGACTAGATGCGATTGCTG
TGTAAGCGCTACACACGCTGCTGGCCGGCATTCGTTCTCAGTCTGGTCAA
TATCACGGTTCTTCTCCGCCTTCCACAACCAGTTTCGTGATCGATTCTCA
AGAGCTTGTTTGGGACACACCTTTTGGGCCCGTTCAAAACATTTTCCACT
GCTTGAACTGCCAACTGATACTTTCGCAGACCGCTTGCGCGGACATTCCC
GCTCGTCGCGACGCTACGTGATACGATTGATATCTCTGTACCAGGTACAA
ATTGATTTGTAGCAGATGCGGTCTCTTGCTCTGTTTCGGGGCACCACTCT
ACGGCCTTGGTTCGCATCTGGTGCTGTGCTGTGTATCTCTGGACGTTTGC
CACTGTTTGTATCACCCATCCATTCGCACAATACGATGCCTCATGACCAA
AGCCTGAATTGACCTCTCCCCTCCCCCAATGTCTCCACTTCTCTGTATGC
ACTACTGTCCATGCGCACACGTGCTCGTTGTGATTTTATTTTCGAACTGC
CCAGATGTACATGCGTTAGAGTACTTGCGCTAAACACGTGGGTGTTCTCA
ACGATGTGGTAATTTGTATGCCCGCCGATATACAACTTGTTTCCAACAGG
GCTGCGATTGTACAGACCCTAACTTTAAATGTGTGCATTGAAGCGCGTGG
CGTAGTTCGTAACCTCACATGCTTTTTCTCGTTTTTTTCTTGCGTGTGCC
AGGACAACAATAGAATGCTCGAGGTCTTGGCAGCAAAGGATGCCGAAACC
GCGCATTTGTCAAAGATTGTCAGCTCCGTCGTCATCCCCGATATTCCTGC
AGGGCAACAAATGGCAGTGTGTGATGAAGAGTCGCAGGCGGTCGTCAAGT
GCTACCTGTCTCGCAGAGAGAGGGGAAACGAACTCGATTGTGGAAAACTT
GTAGATATTTTGGAAGAGTGTGCCTCAAGCCAGTAACTGTGTTGTGATTT
GCCACGTGTGGCGTGTTTAGGAGCCTGTCCGTTTGTTTGTAAAGGCCATT
TAGTTTCCTTACGCCAACACGCCTCTTCGTTGGTTGCCCTACGAAAAGGA
CGTCAATTGGTTCGTAGAAGCGTGATCGTTCCAGCTACAGCTGATACTCT
GAAGAGGGTTCTTCCAGCAGGGCGTTCGTTTCGCTCGCATTTCCGGCGTA
TGATGGTTCCAGCCCATTGATTGGAGAACGTGGATGGTCCATGTTTGTTG
CCAAGCTCGTAAGCCAGCCAAAGGAAATACCCTGCTTTCGGTTCCGACCC
GTAAGAGTCTTGTATGCCCTGCAATTCAGAGTTTCAAGGATACATGACAA
CATATTGCCAGATTTTTTGTCGTGCTGGTTGTCAGGGCTTCTCGAGACGT
TTTGCTATAAGTTTTCCTTGATATCCTGGTCTTTTTTTGTTTGTTTTATC
CCTCTCTAGGATGTCCCAAAACTGATGTGTACCAGGAGGTACACGACAAG
ACGGATCCTGCTCTTTCTCACAAACGCAGTGTTGCTTTCAGGCTGGGTGT
CTCACGAGCAGCTTCGGACGCTGAGATTCTATGGGATAGCTCGCTCGATA
CATTCAGTGGTTTTCAAAGCAAAGGGATAGGTAACTACCTCATTGAGTGA
AAATACCGTAGACACGCCTGAAATCAGGCAGGGTCTAGGACCAGATCGTG
CCCCGTGGCCTGGGGTGAAGAGGGCTCACGAAACGCAGGAGCTGATGCAT
TGCTACCCCCGCGCCCCCCCACAACCCCCCATGTTTTCGGCGTTTTCCCC
AATTGCAAATTGGGGTTTCAGTCCAGCACAATCCCGAAAAAAGCGATATA
GAAATCTTGTCCGAAATTTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig855:21420..26590+

>mRNA_E_fasciculatus_S2_contig855.16679.1 ID=mRNA_E_fasciculatus_S2_contig855.16679.1|Name=mRNA_E_fasciculatus_S2_contig855.16679.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=465bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig855:21420..26590+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCGGCCAACAGTCAAGGCGGGTAGAAGATACATCCGCAGGCGAACC
GGATAGTTGGATGAATCGCGTTGCCGTCAAACCTTCCGAGAATCTCGTCA
AACAGCTTCAAAGGCAGCAACAGTACCAGGTCAGCAGGGTAGAACCGGAT
CCTTCCGCCCCCGAGATTCAATCGAATCAGCAGGAAGAGAACCAGGCAAT
TCGGAGCGAACGAGAACTTAGGAGAGAAGAGGACAACAATAGAATGCTCG
AGGTCTTGGCAGCAAAGGATGCCGAAACCGCGCATTTGTCAAAGATTGTC
AGCTCCGTCGTCATCCCCGATATTCCTGCAGGGCAACAAATGGCAGTGTG
TGATGAAGAGTCGCAGGCGGTCGTCAAGTGCTACCTGTCTCGCAGAGAGA
GGGGAAACGAACTCGATTGTGGAAAACTTGTAGATATTTTGGAAGAGTGT
GCCTCAAGCCAGTAA
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