mRNA_E_fasciculatus_S2_contig8542.16671.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8542.16671.1
Unique NamemRNA_E_fasciculatus_S2_contig8542.16671.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 550 bits (1418), Expect = 1.020e-176
Identity = 275/276 (99.64%), Postives = 275/276 (99.64%), Query Frame = 1
Query:    1 EASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET 828
            EASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGA PPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET
Sbjct: 7498 EASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGAPPPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET 7773          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 548 bits (1412), Expect = 6.520e-176
Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 1
Query:    4 ASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET 828
            ASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGA PPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET
Sbjct: 6897 ASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGAPPPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET 7171          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW96_HETAK)

HSP 1 Score: 244 bits (624), Expect = 2.680e-75
Identity = 132/287 (45.99%), Postives = 178/287 (62.02%), Query Frame = 1
Query:    1 EASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHG-------LAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAA----RELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET 828
             AS +  FL  R      + +S+D  TA  +    RG+VLG++GF  G+HYWEV++D +NWGS F+GVAP  A  W+G+GFL+YRA Q +GSE +YG YY  GD++GVLLDMDRGT+SFVKDG+DFN+GRPVV  MGIAY  LR +      G          LA+YPCFG+KS GD M++  Q W+S++G   A R+ QAVDA+VA     R  RR ++ G   P  ++      + KW+  + + + SRAGV  E+   HA L   AG  A +  G+ VG+R  T
Sbjct:   25 RASTQTFFLLSRKNRHDAIKVSADCLTAQASRESGRGVVLGTKGFCGGVHYWEVRIDGANWGSTFIGVAPADARGWDGFGFLSYRAVQRFGSETLYGNYYGQGDKIGVLLDMDRGTLSFVKDGEDFNVGRPVVAQMGIAYKRLRELYARHRGGXXXXXXXXSQLALYPCFGMKSPGDIMSLENQNWWSQKGYDGAERLSQAVDALVAVQLFRRARRRGLLTGL--PDWILRATHELFRKWKAQKETVYMSRAGVDVEIQTDHALLMECAG-EAGETAGLAVGRRFTT 308          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5W7_9STRA)

HSP 1 Score: 233 bits (593), Expect = 4.560e-72
Identity = 122/277 (44.04%), Postives = 174/277 (62.82%), Query Frame = 1
Query:    1 EASARCLFLFDRARMTGGVSLSSDLGTAACTVSGN-RGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVTHAALQLAAGGVADDFGGIRVGQRVET 828
            + S    FL  R R   G  +SSD  T  C  SG+ R MVLG+RGF  G+HYWEV+V+ +NWGSVF+G AP  +++WNGYG LNYRA Q++GSE +YG+Y++ GD+VGVLLDMD GT+SF KDG+DFN+G+  VVNMG+AYH+LRR+G   ++      +YPCFGVKS GDQ++I    W S RGL  +  +++ + A     +   S         ++V    + Y  W         SR G++  +  +  A++ AAG +AD+F  ++ G+ V+T
Sbjct:    3 DVSQETFFLLKRRRSGDGPQVSSDFTTVTCDNSGSGRSMVLGTRGFSRGVHYWEVQVNAANWGSVFIGAAPHESNSWNGYGLLNYRATQSFGSETLYGSYFSVGDKVGVLLDMDHGTISFFKDGEDFNVGKVTVVNMGVAYHNLRRIGNRSSSSS---MLYPCFGVKSSGDQLSIRKHHWASSRGLAPSSLLQRILHAKSIMHDWNLSYNPTVRLNTTMVSETFKGYHAWSNRDSIVIMSRPGIAVNISSSDNAIRAAAGALADEFA-LKAGKIVKT 275          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUW3_9ARCH)

HSP 1 Score: 193 bits (490), Expect = 3.450e-52
Identity = 93/184 (50.54%), Postives = 130/184 (70.65%), Query Frame = 1
Query:    7 SARCLFLFDRARMTGGVSLSSDLGTAACT-VSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGL 555
            S+   FL+ R+ +  GV++S+D  TA C+  SG+R ++LGSRGF  G+HYWEV V  ++WGSVF+GVAP  AS W+G GF+NYRA QA+GSE +YG+YY   D++GVLL+M+ GT++F KDGDDFN+G   VVNMG+AYH++RR     +       +YPC G+K+  D++TI    W   +GL
Sbjct:  522 SSETFFLWKRSNVNEGVTISNDHMTATCSRQSGSRYLILGSRGFTQGIHYWEVAVKSASWGSVFIGVAPEEASGWHGLGFINYRATQAFGSETLYGSYYGVNDKIGVLLNMENGTLTFFKDGDDFNVGAVRVVNMGVAYHNVRRHTSRYSTSP---VLYPCIGMKAQNDELTIKDGHWHCTKGL 702          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Hypothetical (protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBF6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 5.550e-44
Identity = 115/276 (41.67%), Postives = 147/276 (53.26%), Query Frame = 1
Query:   25 LFDRARMTGGVSLSSDLGTAACTVSGN-RGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVA--------------PRHASTWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHL-RRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQK-WFSRRG----LGHARRVRQAVDAIVAARELRRSIVAGAAPPQSLVDGARRRYSKWR------RGRFSAFPSRAGVSCEVDVTHAALQLA 771
            L DR     G+ +S DL TA CT     RG+ L S   R G HYWEV V+R+ WGSVF+GVA              P  A+ W G GF+NYRA QA+G+E +YG+YY  GD VGVLLD DRGT+SFVKDGDDFN GR VV ++G AY  + RR GR+      GL  Y C G+K  GD++++ G K W         L   +R    ++A+ A  E RR      A P +    A    +KWR      +G+     SRA V   +D +  A   A
Sbjct: 3659 LLDRRECGAGLKVSEDLLTATCTAPRRGRGLALASTRMRTGRHYWEVAVERATWGSVFVGVAAVGAGRGPAAPLKAPGAAAGWAGVGFVNYRATQAFGAEALYGSYYGPGDVVGVLLDCDRGTLSFVKDGDDFNAGRAVVAHLGTAYSDVWRRFGRSCPGARAGL--YACLGLKGDGDRLSLRGSKAWTDGMDVPPRLDAFQRAAGGIEALRAFAEARRF---STALPDAFRAAAAAATAKWRETFDGVQGKRVLARSRARVDVALDASEEAFAKA 3929          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0J5_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.530e-37
Identity = 116/377 (30.77%), Postives = 160/377 (42.44%), Query Frame = 1
Query:    1 EASARCLFLFDRARMTGGVSLSSDLGTAACTVS-GNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPR---------------------------------------------------------------------------------------------------HAST----WNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHL-RRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQK-WFSRRGL------GHARRVR-----QAVDAIVAARELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSA--FPSRAGVSCEVDVTHAALQLAA 774
            + S +  FL DR      + +S+D  TA CT    NRG+VLG++  R GLHYWEV+V+++ WGS+F+GVA +                                                                                                   H ST    W G+GF+NYRA QA+G+E +YG+Y+  GD +GVL D D G V FVKDG+DFN GRPVV+N+G A+  + RR     ++   G   YPCFGVK  GD+++I   K W+  R L      G  R  R     QA  A+ A R L   I   +     L    RR + +W+    +    P+RA V  E+D +  A+  AA
Sbjct: 3018 QLSRQSAFLLDRRHCASSIEISNDCLTATCTAPRANRGLVLGTKCMRHGLHYWEVRVEQATWGSIFIGVAAKGDVVGLDANLSTNNSSSKKHVGSGDAKSTQRWHQHTHSPSSLSHQTTVSSPVLSSSQQRSPTVSRLLSTASAIMNSGASGPVSLSTSYRPHYHPSLSTNHRSTPSSGWGGFGFVNYRATQAFGAEALYGSYFGPGDVIGVLFDADAGKVCFVKDGEDFNQGRPVVMNLGTAFSSVWRRAASRSSSSRAGF--YPCFGVKCEGDRLSICECKSWYDDRELSSPLTEGPPRIKRLDSIIQAAIALDAWRSLTNGISTSSCDTDELYATTRRAHDQWKSRNLTKVRIPNRALVQVELDTSICAITKAA 3392          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRA2_9STRA)

HSP 1 Score: 143 bits (361), Expect = 6.450e-35
Identity = 85/253 (33.60%), Postives = 135/253 (53.36%), Query Frame = 1
Query:   19 LFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHA--------STWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVAARELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSAFPSRA-GVSCEVDVT 750
            LF+ D+      + +S DL T  CT    R + LG+ GF +G+HYWE++VD++ +GSVFLGV  +H+        + W G+GF+N+RA     +E IYG ++ AGD +G+ L+M+ G +SF  DG  F  G  +V ++G+A+  L+          H   +YPC G++  GD++T+ G KW S+ GL  +      V+       + RS       P   +      Y +WR  R+   P+R+ GV  +VD +
Sbjct: 2885 LFVMDKQAAFSTLKISDDLLTVQCTSGEARNLALGNVGFSSGIHYWEIRVDQAEFGSVFLGVCEKHSKGQSSLNLNRWQGWGFVNFRATYHNSTERIYGDHFNAGDTIGICLNMEAGKLSFFMDGIKF--GEHIVTDLGVAFDGLKN-------DRHIKTLYPCIGLRKSGDKVTLNG-KWISQPGLPPSLLCHDNVEL----HSICRSWSLDQPLPSQFLQSCYTHYCRWRSNRYLRVPTRSKGVIIDVDTS 3123          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCW2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 8.800e-33
Identity = 78/194 (40.21%), Postives = 113/194 (58.25%), Query Frame = 1
Query:   55 VSLSSDLGTAAC---TVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHAST---WNGYGFLNYRA--CQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFS-RRGLGHARRVRQAVDAIVAARE 609
            +SLS+DL +A       +GN  ++ G+     G+HYWEV +   + GS+F+G+A    ++   W  +GF++YR   CQA G ++ YG Y++AGD +GV  DM+ GT+SF+KDGDDF  GRP V+NMG+A+ HLR          H L   P  G    GD   + GQKW S  R      R++QA++A V  +E
Sbjct: 3999 LSLSNDLSSATLEPHASAGNHVLIRGNMSMSCGVHYWEVGIQSCSHGSLFIGIASSMITSSEGWGDFGFVSYRVRWCQAEGEQL-YGRYFSAGDTIGVRFDMEEGTLSFIKDGDDFTRGRPAVINMGVAFRHLRTQNSC-----HRLTFVPVIGCSHPGDSFFVKGQKWTSYNRYQWPMERLQQALEASVVIQE 4186          
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY61_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.610e-32
Identity = 87/262 (33.21%), Postives = 140/262 (53.44%), Query Frame = 1
Query:    1 EASARCLFLFDR-ARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLHYWEVKVDRSNWGSVFLGVAPRHAS--------TWNGYGFLNYRACQAYGSEIIYGAYYAAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTDAAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVD--AIVAARELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSAFPSRA-GVSCEVDVT 750
            +A ++ LF  D+ A     +S+S D     CT    R + LG+ GF +G+HYWEV+VD + +GSVFLGV  +H           W G+GF+N+RA     +E IYG ++ AGD +GV L+M+ G +SF  DG  +  G  +V ++G+A+  L+       +  H   +YPC G++  GDQ+T+ G KW S  GL      +  V+  +++ A   R  ++     P + +  +   Y +WR  R+     RA G++ +VD +
Sbjct: 3110 QAQSQHLFALDKQATFAASLSVSDDGLAVTCTSGEARNLSLGTVGFSSGIHYWEVRVDHAEFGSVFLGVCEKHVKGQPSLNLGRWQGWGFVNFRATYHNSTERIYGDHFNAGDTIGVCLNMESGKLSFFMDGIKY--GEHIVTDLGVAFDGLK-------SDRHIKTLYPCIGLRKAGDQVTLNG-KWVSHPGLSSTLLYQDHVELQSVLHAWAGRDDVL-----PLAFMQASYAFYCRWRTNRYRRVSIRAKGMTIDVDTS 3356          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8542.16671.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.020e-17699.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.520e-17699.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical2.680e-7545.99protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical4.560e-7244.04protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Uncharacterized3.450e-5250.54protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Hypothetical5.550e-4441.67protein n=5 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical6.530e-3730.77protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Uncharacterized6.450e-3533.60protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized8.800e-3340.21protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized1.610e-3233.21protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8542contigE_fasciculatus_S2_contig8542:4388..6079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score550.1
Seed ortholog evalue6.1e-154
Seed eggNOG ortholog2880.D8LCZ5
Model size830
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
Cds size828
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842512.6706216-CDS-E_fasciculatus_S2_contig8542:4388..49091696842512.6706216-CDS-E_fasciculatus_S2_contig8542:4388..4909Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8542 4389..4909 -
1696842512.6925972-CDS-E_fasciculatus_S2_contig8542:5312..54601696842512.6925972-CDS-E_fasciculatus_S2_contig8542:5312..5460Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8542 5313..5460 -
1696842512.7052739-CDS-E_fasciculatus_S2_contig8542:5920..60791696842512.7052739-CDS-E_fasciculatus_S2_contig8542:5920..6079Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8542 5921..6079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8542.16671.1prot_E_fasciculatus_S2_contig8542.16671.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8542 4389..6079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8542.16671.1

>prot_E_fasciculatus_S2_contig8542.16671.1 ID=prot_E_fasciculatus_S2_contig8542.16671.1|Name=mRNA_E_fasciculatus_S2_contig8542.16671.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=276bp
EASARCLFLFDRARMTGGVSLSSDLGTAACTVSGNRGMVLGSRGFRAGLH
YWEVKVDRSNWGSVFLGVAPRHASTWNGYGFLNYRACQAYGSEIIYGAYY
AAGDRVGVLLDMDRGTVSFVKDGDDFNMGRPVVVNMGIAYHHLRRVGRTD
AAGHHGLAMYPCFGVKSLGDQMTIGGQKWFSRRGLGHARRVRQAVDAIVA
ARELRRSIVAGAAPPQSLVDGARRRYSKWRRGRFSAFPSRAGVSCEVDVT
HAALQLAAGGVADDFGGIRVGQRVET
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mRNA from alignment at E_fasciculatus_S2_contig8542:4388..6079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8542.16671.1 ID=mRNA_E_fasciculatus_S2_contig8542.16671.1|Name=mRNA_E_fasciculatus_S2_contig8542.16671.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1692bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8542:4388..6079- (Ectocarpus fasciculatus EfasUO2)
GAGGCGAGCGCTCGCTGCCTGTTCCTGTTCGATCGGGCGCGGATGACCGG AGGGGTCAGCCTGTCGTCAGACCTCGGGACTGCCGCGTGCACCGTTTCCG GGAACAGGGGAATGGTTCTCGGGAGCCGCGGATTCCGCGCCGGGTTGCAC TACTGGGAGGTAGGAGGGGTGGAGAGGTGCTCATGTTTCGCATTCCTTGA TTTTTTAGACCATTGACCCTCGAGTGGATGGAGCGTTGTTCCCACAGGAC CGATCACCAATCGATCCTCTTCTCTACTTTGCCTAAAGGTGTTCAAAAAC AACGGTGTTCAAAAGGAATCAAGAGGCGCGTTTTGTTGTTTTTATGGTTT GCAGGTTTGCCCTGGTTGGTCGTGACACGTATCGATTTTGGCCCAAAAGC GACCACCATCTGACTGCTGTCCGCATGTTGAAGACAGGGTCGCTGCCGGT TAGGTCCACGACCAGTTTTATCCCCGGGGGTGGGCATTCAGTTGCCGTGT GGATCTGCTCGCCCCCTCGGGCGTCGTGTCTACTGCGGGTGCGTTTTTTA GCGACGCTCACTGTCGGTGCCTGCCCAACATGCTCTCTGTCTCCGCCTCG CCTGCAACTCGCCCGGCAGGTCAAGGTCGACCGCTCCAACTGGGGAAGCG TATTCCTGGGGGTTGCTCCGCGGCACGCCTCCACCTGGAACGGATACGGC TTCCTGAACTACCGCGCGTGCCAGGCGTACGGGTCGGAGATCATTTACGG GGCTTACTATGCTGCTGGTGAGTGGTGGAGGCAGTGTGTACAGGGGTGCC GAACGTGGTTTTCAGGGGTGGAAAGGAGTGAACTGAAGTCGTTTTGGGGC AGAAAGGGGATAAATATCATGTTTGCGAGGCGTGAACTGTACGTGCGTGT CGCATTTTGGTTGGACGTTATGTTATTCAACGCGGGAGAGACCTGCATCT CCTGCGGTACGGTCTGTCTGTCTCAGACGCCCCTTCACTCCCTACCCTTT TCCCGACCTTTTTCACCACGCCCTCACACCTTTTTCTCACGCCCATGCCT TGTTTGTGACCTCATGCGTGTTGCCTCTCTTCCCTCCCTAAATACCTTGT CTCCGCCCCCACAATATCCTTTCCCCGCCCTTATAACCAATACTACCTCT TTTCTCGGCCACCACCCCAGGGGACCGAGTGGGAGTCTTGCTGGACATGG ACCGGGGCACCGTATCCTTCGTTAAGGACGGCGACGACTTCAACATGGGG CGTCCGGTCGTGGTGAACATGGGCATCGCATACCACCACCTCCGCCGCGT GGGGCGGACCGACGCCGCCGGCCACCACGGCCTGGCCATGTACCCCTGCT TCGGGGTCAAGAGCCTCGGCGACCAGATGACCATCGGCGGCCAGAAGTGG TTCAGCCGGAGGGGCCTCGGGCACGCGAGGCGGGTCCGGCAGGCGGTCGA CGCTATCGTCGCCGCGCGGGAGCTCCGGCGCTCGATCGTCGCCGGCGCGG CGCCCCCGCAGTCCCTAGTCGACGGGGCCCGCCGCCGCTACTCCAAGTGG CGGAGGGGCCGGTTCAGCGCCTTCCCGTCACGAGCCGGGGTGTCCTGCGA GGTGGACGTGACCCACGCGGCGCTCCAGTTGGCGGCGGGGGGGGTCGCCG ACGACTTCGGGGGGATCCGGGTCGGGCAGCGGGTGGAGACGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8542:4388..6079-

>mRNA_E_fasciculatus_S2_contig8542.16671.1 ID=mRNA_E_fasciculatus_S2_contig8542.16671.1|Name=mRNA_E_fasciculatus_S2_contig8542.16671.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=828bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8542:4388..6079- (Ectocarpus fasciculatus EfasUO2)
GAGGCGAGCGCTCGCTGCCTGTTCCTGTTCGATCGGGCGCGGATGACCGG
AGGGGTCAGCCTGTCGTCAGACCTCGGGACTGCCGCGTGCACCGTTTCCG
GGAACAGGGGAATGGTTCTCGGGAGCCGCGGATTCCGCGCCGGGTTGCAC
TACTGGGAGGTCAAGGTCGACCGCTCCAACTGGGGAAGCGTATTCCTGGG
GGTTGCTCCGCGGCACGCCTCCACCTGGAACGGATACGGCTTCCTGAACT
ACCGCGCGTGCCAGGCGTACGGGTCGGAGATCATTTACGGGGCTTACTAT
GCTGCTGGGGACCGAGTGGGAGTCTTGCTGGACATGGACCGGGGCACCGT
ATCCTTCGTTAAGGACGGCGACGACTTCAACATGGGGCGTCCGGTCGTGG
TGAACATGGGCATCGCATACCACCACCTCCGCCGCGTGGGGCGGACCGAC
GCCGCCGGCCACCACGGCCTGGCCATGTACCCCTGCTTCGGGGTCAAGAG
CCTCGGCGACCAGATGACCATCGGCGGCCAGAAGTGGTTCAGCCGGAGGG
GCCTCGGGCACGCGAGGCGGGTCCGGCAGGCGGTCGACGCTATCGTCGCC
GCGCGGGAGCTCCGGCGCTCGATCGTCGCCGGCGCGGCGCCCCCGCAGTC
CCTAGTCGACGGGGCCCGCCGCCGCTACTCCAAGTGGCGGAGGGGCCGGT
TCAGCGCCTTCCCGTCACGAGCCGGGGTGTCCTGCGAGGTGGACGTGACC
CACGCGGCGCTCCAGTTGGCGGCGGGGGGGGTCGCCGACGACTTCGGGGG
GATCCGGGTCGGGCAGCGGGTGGAGACG
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