mRNA_E_fasciculatus_S2_contig8541.16668.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8541.16668.1
Unique NamemRNA_E_fasciculatus_S2_contig8541.16668.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8541.16668.1 vs.
Match: Duf842 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L447_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 1.350e-71
Identity = 125/145 (86.21%), Postives = 134/145 (92.41%), Query Frame = 3 
Query:   45 MEGRDQQAMQRKYQEMVAELDKIDAQLVRKAADSCAEACIGSNSLSNSEVVNACMRRCEGSLPVLDQTVQQELTNLQGRMQLCALDCANEMAVAVPPGTKESDPAMQQGALQNMECTAACASKSVLLVSSTLAKISAAANRAAKK 479
            MEGRD QAMQRKYQEMVA+LDKIDAQLVRKAA+ C +ACIGS SLSNSEVVNACM RCE S PVLDQTVQQELTNLQG MQLCALDCA++MAVAVPPGTKE DP MQQGALQNMECTAACASKSV+L+SSTLAKI+AAA+ AAKK
Sbjct:    1 MEGRDHQAMQRKYQEMVADLDKIDAQLVRKAAELCTKACIGSTSLSNSEVVNACMLRCEASRPVLDQTVQQELTNLQGLMQLCALDCADKMAVAVPPGTKEGDPVMQQGALQNMECTAACASKSVVLMSSTLAKITAAAHEAAKK 145
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BLAST of mRNA_E_fasciculatus_S2_contig8541.16668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM41_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.830e-34
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 3 
Query:   45 MEGRDQQAMQRKYQEMVAELDKIDAQLVRKAADSCAEACIGSNSLSNSEVVNACMRRCEGSLPVLDQTVQQELTNLQ 275
            MEGRDQQAMQRKYQEMVAELDKIDAQLVRKAADSC EACIGS SL+NSEVVNACMRRCE S PVLD TVQQELTNLQ
Sbjct:    1 MEGRDQQAMQRKYQEMVAELDKIDAQLVRKAADSCTEACIGSTSLTNSEVVNACMRRCEASRPVLDLTVQQELTNLQ 77
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8541.16668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM42_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.510e-28
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 3 
Query:  270 LQGRMQLCALDCANEMAVAVPPGTKESDPAMQQGALQNMECTAACASKSVLLVSSTLAKISAAANRAAK 476
            +QGRMQLCALDCA+EMA AVPPGTKESDP +QQGALQNMECTAACASKSVLL+SSTLAKISAAA+ AAK
Sbjct:    1 MQGRMQLCALDCADEMAAAVPPGTKESDPVLQQGALQNMECTAACASKSVLLMSSTLAKISAAAHEAAK 69
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8541.16668.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Duf8421.350e-7186.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.830e-3492.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.510e-2888.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8541contigE_fasciculatus_S2_contig8541:1862..5581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score107.1
Seed ortholog evalue7.2e-21
Seed eggNOG ortholog2880.D7FM43
Preferred nameFAM136A
Model size1700
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons4
EggNOG free text desc.Eukaryotic protein of unknown function (DUF842)
EggNOG OGsKOG3377@1,KOG3377@2759
Cds size438
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8541.16668.1prot_E_fasciculatus_S2_contig8541.16668.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8541 3080..5537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842512.4514225-UTR-E_fasciculatus_S2_contig8541:1861..30791696842512.4514225-UTR-E_fasciculatus_S2_contig8541:1861..3079Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8541 1862..3079 -
1696842512.5082202-UTR-E_fasciculatus_S2_contig8541:5537..55811696842512.5082202-UTR-E_fasciculatus_S2_contig8541:5537..5581Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8541 5538..5581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842512.462998-CDS-E_fasciculatus_S2_contig8541:3079..31811696842512.462998-CDS-E_fasciculatus_S2_contig8541:3079..3181Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8541 3080..3181 -
1696842512.473869-CDS-E_fasciculatus_S2_contig8541:3847..39521696842512.473869-CDS-E_fasciculatus_S2_contig8541:3847..3952Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8541 3848..3952 -
1696842512.4844089-CDS-E_fasciculatus_S2_contig8541:4623..47641696842512.4844089-CDS-E_fasciculatus_S2_contig8541:4623..4764Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8541 4624..4764 -
1696842512.4942532-CDS-E_fasciculatus_S2_contig8541:5447..55371696842512.4942532-CDS-E_fasciculatus_S2_contig8541:5447..5537Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8541 5448..5537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8541.16668.1

>prot_E_fasciculatus_S2_contig8541.16668.1 ID=prot_E_fasciculatus_S2_contig8541.16668.1|Name=mRNA_E_fasciculatus_S2_contig8541.16668.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=146bp
MEGRDQQAMQRKYQEMVAELDKIDAQLVRKAADSCAEACIGSNSLSNSEV
VNACMRRCEGSLPVLDQTVQQELTNLQGRMQLCALDCANEMAVAVPPGTK
ESDPAMQQGALQNMECTAACASKSVLLVSSTLAKISAAANRAAKK*
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mRNA from alignment at E_fasciculatus_S2_contig8541:1862..5581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8541.16668.1 ID=mRNA_E_fasciculatus_S2_contig8541.16668.1|Name=mRNA_E_fasciculatus_S2_contig8541.16668.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3720bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8541:1862..5581- (Ectocarpus fasciculatus EfasUO2)
CGCAAACGTTATTCAGCGTACAGCAGTAGACCACCGACGTTAGGATGGAA
GGGCGCGACCAGCAGGCGATGCAAAGAAAGTACCAAGAGATGGTAGCGGA
ACTGGATAAGATCGATGCGCAGCTTGTTCGAAAAGTGAGTGCATATCGGA
TGCTAACTTGCCTACTTTAGACTAATAGGGATAGTCTAGAAGTGTGCTCG
TGGTAGGTGGTAGGTGTGTGCCGACACATGAGGTGCCTCTGCTGTACAGC
AGTATGTTGCATGTTGCAATGGTCTCTTTGCTCTTTGTGCTCTACCGACC
TATTTCGAAGGTGGATGAGGGCGGCTGCGTTGTTGGGTTTGCAAACAATA
ATCCAGTGTGAAGCACACATCATACGATATGCTGGCACTCGCAGGTCTCC
ATACAAAGCACTGCAGCCGTATACTCTTACTTTTTAAGCAGGACTCGAAA
TCGTGGAGCACACGATGGTGGCCTCGCCCAGTAGCTCTCATGCATCGATT
GTAGGCGAGGCACGTCATCCTAAGAGGCACAGTACATCTCAGGCGTGATG
GATTGACGACGTCCTTGATTGGAGCCCCGTGGGAGAGATCGCGTGACCTG
GGGCGGAGCAACAGCAGAAAGACACAAGATTAAGATTCCCTCATCCCCGA
CAACACAAGCTTCTCCTATAGGCCACACACAGGGGTATCGATCAAGAAAG
GACATATCTAGACCTTGGCCACGTAGCGAGCGGCACCGTGACCTCATCTA
ACCGCTGCTTCTTCTTTCGTCTCTCTCCCTTGGATGCCTTCGACGTGGTA
TCTACATGTCGAAACAGGCCGCGGACTCTTGCGCCGAAGCGTGCATCGGC
AGCAATAGCCTCAGCAATAGCGAGGTAGTGAACGCATGCATGCGAAGGTG
CGAGGGGTCCCTCCCAGTCTTGGACCAGACGGTTCAGCAGGAGCTGACCA
ATCTGCAGGTGAGCACGCGTCGCCGGTTTCAGAGGCCATCTTTGTGACTG
TCCCGAGCGAAGAGGACAGACTGGAGGCACACTCCTTGACAAGCAGTGGA
GAGCAGGGCTCATGGCTCATGCCGCCGGTCCAAGGAGAATGGGGTTAGGG
ACAAGGATAATGGGGTTAGGGACAAGGAGAATGGGGTTAGGGTTGACCCA
ACAATAGAGCTTGCCGGTATGTAGCATGAGACACGGCCCAGAGAGACTCA
CAAACAACGGCTTTATACTATAGGTGGTCGCACGCTAGAGATCAAATATT
TTCGTATCGTTAGCGTTATCTTTTGTCCGCGTGTTTTGTTTTCGTTGAAA
ACCTGGATACGTAAGCCCCCCCGGTGTGAGCCATCGCGGCCAAGCGTGCG
TGCTACCTGTGTTCGTGCATCATCATCATCAACATCATCATCGTCATCGT
CATGTATATTTTCTGGGTCCGTTTTTTGTTCCGTTGTTTTACTTCTATAA
TAGCAATGTGTAGCTGTGACCAGGAAGGCGTTCGCGTCATTTGGACCGAT
ACGGGTGTTGTAGAAGGTACTGTACTGAAAAGAGACGGGGAAAAAATGTA
CAACTGCTGTGTCAAGTCTACAACACCAACAACATTTATATTCTGTGTGT
GTTGCTTGGTCGCCGGTCGATGGATGCAGGGCCGAATGCAGCTGTGCGCG
TTGGACTGCGCCAACGAGATGGCCGTCGCCGTTCCACCGGGGACAAAAGA
GAGCGACCCCGCGATGCAGCAAGGCGCCTTGCAAGTGAGAGCGGCCTACG
CCAAAAATTTGCGTGCGACCATAAGCAGTCGTACTAACAACTACTGTAGT
TCCGTGATGTACAAGATTCACGAAGTTTAGGGTTACAGATGTTGTTTTCG
CAAACAGTTGACGCAGACGTGGTAAGGTATAACGCCTTGCACACACAGCA
ACCGGTCGTGCACATGGTTCTGTTTTACAGAGATTGACGGCGTGCTGTGT
GGCTAGTTGAGCAGGCTTGCGGGTGTTTTTGAGAACGCGTCATGCGAAAG
AACGCGCGACTTGCGATGAACGTTTAGCTGCTGCTTGCCAGTGTCGAAAA
ACAAGGGTTTGTTGTGTTTTTTGTATGTGCATCGACCGCGCCAACCAGCT
GACTCACCTAAACGGAAGCACGTCAGCAACGCTAACGTAACGCGCTTTTC
AAACGACAATATTTTCTGTGCTTGCAAGTGAAAGGTGTACTGCTGGCTGG
CTGTGTAAGGTTGGCACGCAACTGAGGGAAACGAGAAACGTGCAGCGCAT
TTCCTACTCTTGTCGTACATGTAAAGTGCTTCTTTCGCGTGCCGCGCTTG
ACGCACGCATGACGAGAAGTCCAGCCATAACCTTGACGCCGTTCAAATAC
CCTCAGTCTTGGACATCTGTTTCTCTTTGTTTGCCTTGCACCCGCCGCAG
AACATGGAGTGCACAGCGGCGTGTGCCTCAAAGTCAGTCTTGCTGGTGTC
GAGCACGCTGGCTAAGATATCGGCGGCGGCAAATCGAGCGGCGAAGAAAT
AGCGACAGCACGGAAAAGAGAAAGAGCCCTGTACAAAAAATCCTGGTAGA
ACACCACAAGATGTCCGGCAGGCCGGTAGAAGGTCATTCCTTGGTTTTGA
CACATGTTTGGATTAGTGTTTGGTTCCCTGCCATACATCAGTAGTTGTCG
CCCGGAGATATCATAAGAAAAGTGAACGTCGGGGTCGTAGCTCAATCTCT
TACTGCTTCGTCGCCACCACCGTCCGTGCAGCAAGTATATTTTGTACGAA
TCTATTTATAGTTTAGGGTAGGATCCCACCGCCGGGCTGTGTTTCTTATT
TTGGCGATGATAGGGGCTTCTCTCTCGTACGGAGTTTTCTTAGCTACGGG
CGCCAGCTGCTGCGCTTGGACTACAAGCAAAGCCTGCGACCAAGAATGCA
AAGGCGTTTCTTCCACTGTGTTGGACGGACGTTTTGACGAGCAAGGAGGA
GGGGGAGGGGGTCAGACTAGAGTAGTTCGTGACGTGAAGCAACAACGGTA
ATCGTTGCTCGTGTCACATGCTCCAAGTTTCAAGTGTACGAGGAACTCAG
TGCTCCGGAGCACGGCACGCTAATAACTAGGAGTAAGAATTAGATATATA
TATATCCGTTGGTGTGATGGACTACGAAAAAGAAACCATTCTGTCGGAGA
TATGGCCGTGGTGGAACAGTTGCGGCAAAGCAGCATGCGAAAAGAGCAGC
AGGAATAAGCACGGATTTATTTACGAACCATCCCATAATAGGGGGCGCAA
CAAGGGGCCGATACGACGTTGGCATAGGGCTAAGGTTCGGTAGCCTCGGT
ACTAATAACGTACCGAGTTTCCTATGTTTTGCGAATTGGATCTGATCTCG
GGACAGACAGGCACACCTACTATGCCATATTGGCTCCGTTTGTGTAAAGG
TTTTCGTTTATTGACACCTGGCTGTTCAGAAATATAAGGGCCATTCGGAC
ATTAATGTGATTGTCCCAGTGGTTCCTTTGTTTCCGAACAGAAGTGAATC
TGTATTCATTCGTAAGGTACGGAGCTACGCGGCCGCGTAGCCAATGTTGT
CGGGGGGTGTACTTGTAATACTTGCACACTCACAGCAAGCAGTAAAACGA
GATCCAGATACATATGAAGCTACGCGGCCTTGCCGCCATTGCTATTGTCG
GGGGGTGTACCCCCTATCCTAGGACATAATTTTTGCTGTGTACACGTGTA
CACTCAGGGTAAAACGAGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8541:1862..5581-

>mRNA_E_fasciculatus_S2_contig8541.16668.1 ID=mRNA_E_fasciculatus_S2_contig8541.16668.1|Name=mRNA_E_fasciculatus_S2_contig8541.16668.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8541:1862..5581- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGGGCGCGACCAGCAGGCGATGCAAAGAAAGTACCAAGAGATGGT
AGCGGAACTGGATAAGATCGATGCGCAGCTTGTTCGAAAAGCCGCGGACT
CTTGCGCCGAAGCGTGCATCGGCAGCAATAGCCTCAGCAATAGCGAGGTA
GTGAACGCATGCATGCGAAGGTGCGAGGGGTCCCTCCCAGTCTTGGACCA
GACGGTTCAGCAGGAGCTGACCAATCTGCAGGGCCGAATGCAGCTGTGCG
CGTTGGACTGCGCCAACGAGATGGCCGTCGCCGTTCCACCGGGGACAAAA
GAGAGCGACCCCGCGATGCAGCAAGGCGCCTTGCAAAACATGGAGTGCAC
AGCGGCGTGTGCCTCAAAGTCAGTCTTGCTGGTGTCGAGCACGCTGGCTA
AGATATCGGCGGCGGCAAATCGAGCGGCGAAGAAATAG
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