prot_E_fasciculatus_S2_contig8539.16664.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig8539.16664.1
Unique Nameprot_E_fasciculatus_S2_contig8539.16664.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length100
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8539.16664.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.730e-45
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0 
Query:   25 LRFSSYSLLEGGDTAAGSLGLPTGALFAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 100
            LRFSSYSLLEGGDTAAGSLGLPTGALFAPF+ELQP P RIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN
Sbjct:   10 LRFSSYSLLEGGDTAAGSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN 85
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8539.16664.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE1.730e-4596.05Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.1670coord: 30..64
e-value: 5.0E-12
score: 47.2
NoneNo IPR availableGENE3D2.30.30.380coord: 65..100
e-value: 5.0E-12
score: 47.2
IPR006895Zinc finger, Sec23/Sec24-typePFAMPF04810zf-Sec23_Sec24coord: 68..100
e-value: 1.8E-9
score: 37.5
IPR037364Protein transport protein Sec23PANTHERPTHR11141PROTEIN TRANSPORT PROTEIN SEC23coord: 31..100
IPR036174Zinc finger, Sec23/Sec24-type superfamilySUPERFAMILY82919Zn-finger domain of Sec23/24coord: 57..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8539contigE_fasciculatus_S2_contig8539:186..1761 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8539.16664.1mRNA_E_fasciculatus_S2_contig8539.16664.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig8539 186..1761 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig8539.16664.1 ID=prot_E_fasciculatus_S2_contig8539.16664.1|Name=mRNA_E_fasciculatus_S2_contig8539.16664.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
RGCGWVWVTARRREEMTSPPPPPPLRFSSYSLLEGGDTAAGSLGLPTGAL
FAPFSELQPPPPRIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKEN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036174Znf_Sec23_Sec24_sf
IPR037364Sec23
IPR006895Znf_Sec23_Sec24