|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE) HSP 1 Score: 375 bits (962), Expect = 6.090e-111 Identity = 211/266 (79.32%), Postives = 227/266 (85.34%), Query Frame = 3
Query: 210 EPPASRNELASAITASGVEQDRVMYTRLHPALLPKGLRAVLQSTPSQRGSSSS---SSSRTEAASLARFSDFVRGVVGGTRGHRETTAAIASKLEGKMFYLESFASGQTEAQSAGARAERQAGRAAKRGLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGRWGGGGGRQQ 998
E PA++NE ASAITA G +QD+VMY RL PALLP GLRA L STP GS+ S SSS AASL RFSD VRG+VGGTRGHR+TTAAIASKLEGK+ YL+S ASGQTE Q+AGARAERQAGRA KRGLSGKRCKQMGLNALEARNGG IPFRDLLGLHGVWKNYAA LVSK SSQK+LQQR LSA+LQGCYLTVSRAS S+LVNVAGIVLRET N FQLVTPAGK LTIPKRSCAVRLAFGD+ VT +GG LMGR GGG +QQ
Sbjct: 1044 EAPATQNERASAITADGSQQDQVMYARLPPALLPTGLRAAL-STPQSGGSTPSRRHSSSTAAAASLDRFSDLVRGMVGGTRGHRKTTAAIASKLEGKVVYLDSLASGQTETQTAGARAERQAGRATKRGLSGKRCKQMGLNALEARNGGRIPFRDLLGLHGVWKNYAARLVSKCSSQKILQQRTLSAELQGCYLTVSRASVSSLVNVAGIVLRETVNIFQLVTPAGKMLTIPKRSCAVRLAFGDRMVTRNGGTLMGRRGGGARQQQ 1308
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP5_ECTSI) HSP 1 Score: 338 bits (868), Expect = 7.730e-109 Identity = 187/219 (85.39%), Postives = 195/219 (89.04%), Query Frame = 3
Query: 426 VVGGTRGHRETTAAIASKLEGKMFYLESFASGQTEAQSAGARAERQAGRAAKRGLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGRWGGGGGRQQRKTGKGRGPWAGGGSDDPAALPLPTAAL 1082
+VGGTRGHRETTAA+ASKLEGK+ YL++FASGQTEAQSAGARAERQAGRA K GLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAA LVSK SQKVLQQRILSADLQGCYLTVSRAS S+LVNVAGIVLRE ANTFQLVTPAGKTLTIPKRSCAVRLAF D+ VTLDGGALMGR GGG RQQ+K GK DDPAALPLPTAAL
Sbjct: 1 MVGGTRGHRETTAALASKLEGKVVYLDNFASGQTEAQSAGARAERQAGRATKLGLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAARLVSKCPSQKVLQQRILSADLQGCYLTVSRASASSLVNVAGIVLREAANTFQLVTPAGKTLTIPKRSCAVRLAFADRVVTLDGGALMGRRGGGA-RQQQKAGKXXXXXXXXXPDDPAALPLPTAAL 218
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Ribonuclease (P protein subunit p29 n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2UWF8_TOXCA) HSP 1 Score: 73.6 bits (179), Expect = 1.970e-11 Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 3
Query: 648 SIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGAL 962
+I + L+ +W +Y +L++ S K +RIL AD GC L VS A + V + GIV+RET TFQL+T A + LTIPK+ R AF + TL G A
Sbjct: 49 NIRYEQFEPLYEMWCDYFGSLLTATS--KRTDERILKADFHGCLLMVSNADNPSQVGLHGIVVRETRQTFQLITKADRLLTIPKQGTTFRFAFEGRVYTLFGDAF 151
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Ribonuclease, (putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQK2_ACACA) HSP 1 Score: 68.9 bits (167), Expect = 7.350e-10 Identity = 43/124 (34.68%), Postives = 61/124 (49.19%), Query Frame = 3
Query: 597 KRCKQMGLNALEARNGGSIP-----FRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDG 953
KR K M +N IP + + LH +WK Y +LV + L ++L ADL GC L V+R+ +L+ + GIVL ET TFQ++TP + +PK + Q VTL G
Sbjct: 26 KRSKVMKAKEQREKNMFKIPEEARKYEMYVPLHAMWKEYIDSLVGNATGAP-LTAKLLKADLHGCCLKVTRSKCPSLIGLEGIVLLETEQTFQIITPQNQLRVVPKANNVFTFVVSSQVVTLYG 148
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Ribonuclease (P protein subunit p29 n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AUU0_9BILA) HSP 1 Score: 65.1 bits (157), Expect = 1.040e-8 Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 3
Query: 651 IPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDG 953
+ ++ L+ +W Y +L++ + R+L AD GC V+ A + + +AGI++RET +TFQL+T A K +TIPK + F +Q +TL G
Sbjct: 47 LKYKQFEPLYQLWLEYYESLMNLAAYP---DDRLLKADYHGCLFMVTDALNPSQIGLAGILIRETRHTFQLITKADKLITIPKEGTTFQFVFKNQVITLFG 144
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Ribonuclease (p protein subunit p29 n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WT79_THATH) HSP 1 Score: 67.4 bits (163), Expect = 2.120e-8 Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 3
Query: 597 KRCKQMGLNALEARNGGSIPFR------DLLG-LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGR 971
KRC++ ++ + R GS+ F D+ +H +WK+Y L+ + K + QR+LSADL G L V + V GI++RETA TF ++T K +PKR+ L +TL G L R
Sbjct: 178 KRCRKH-MSTKQHRKSGSLDFPAEIHKFDIFEPMHEMWKSYVLKLIGSLGDMKKIAQRLLSADLHGAILRVVECKLISYTGVTGIMVRETAETFGIITRDNKFRVVPKRASVFMLQAHCWKITLCGDQLTSR 308
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5D557_AQUCA) HSP 1 Score: 67.0 bits (162), Expect = 2.790e-8 Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 3
Query: 675 LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGR 971
+H +WK+Y L+ V K + QR+LSADL G L V + +V GI++RETA TF ++T K +PKR+ L +TL G L R
Sbjct: 208 MHEMWKDYVLKLIGNVGDLKKVAQRLLSADLHGVILRVVECKVISYTDVTGIMVRETAETFGIITRDNKFRVVPKRASVFMLQAHCWKITLRGDQLTSR 306
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: uncharacterized (protein LOC120281673 isoform X1 n=3 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE47E6) HSP 1 Score: 67.0 bits (162), Expect = 3.570e-8 Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 3
Query: 675 LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGRWGG 980
+H +WK Y L+ ++ +K L Q +L ADL G L+V T+ V GI++RETA TF ++T + L +PK+ L G +TL G L R GG
Sbjct: 237 MHEIWKEYILELLKEIGGKK-LAQNLLIADLHGAILSVVECKTAVFKGVNGIMIRETAQTFGIITTENRFLVVPKKGSVFILQAGPWKITLYGDKLSLRCGG 337
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Ribonuclease (P family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMU1_KLENI) HSP 1 Score: 65.5 bits (158), Expect = 6.610e-8 Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 3
Query: 675 LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALM 965
L +W+ Y L Q L R+L+AD G +L+VS + T + G+++RET NTFQ+VT + +PKR ++ G+ V+L G ++
Sbjct: 160 LQAIWQEYILKLTQGCGGQ-ALMSRLLTADYHGAFLSVSASKDPTYIGTEGLIVRETQNTFQMVTTQNRLQVVPKRGSIFQMKLGNNLVSLFGNQIV 255
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Match: Ribonuclease (P protein subunit p29 n=5 Tax=Brugia TaxID=6278 RepID=A0A0K0J4Y8_BRUMA) HSP 1 Score: 62.8 bits (151), Expect = 1.080e-7 Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 3
Query: 648 SIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGAL 962
S+ + L+ +W +Y +TL++ + Q L R+L AD GC L + A+ V + GIV+RET TF L+T + LTIPK+ + A + L G A
Sbjct: 50 SLKYSQFEPLYELWCDYFSTLINGSNGQ--LDARMLKADYHGCLLMIVEAANPAQVGLCGIVIRETRQTFMLITKQDRLLTIPKQDTIFQFALEGKIYLLFGNAF 152
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8535.16662.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 6.090e-111 | 79.32 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Uncharacterized | 7.730e-109 | 85.39 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Ribonuclease | 1.970e-11 | 40.95 | P protein subunit p29 n=2 Tax=Toxocara canis TaxID... | [more] |
| Ribonuclease, | 7.350e-10 | 34.68 | putative n=1 Tax=Acanthamoeba castellanii str. Nef... | [more] |
| Ribonuclease | 1.040e-8 | 33.66 | P protein subunit p29 n=1 Tax=Syphacia muris TaxID... | [more] |
| Ribonuclease | 2.120e-8 | 33.33 | p protein subunit p29 n=1 Tax=Thalictrum thalictro... | [more] |
| Uncharacterized | 2.790e-8 | 37.37 | protein n=3 Tax=Aquilegia coerulea TaxID=218851 Re... | [more] |
| uncharacterized | 3.570e-8 | 37.25 | protein LOC120281673 isoform X1 n=3 Tax=Dioscorea ... | [more] |
| Ribonuclease | 6.610e-8 | 32.99 | P family protein n=1 Tax=Klebsormidium nitens TaxI... | [more] |
| Ribonuclease | 1.080e-7 | 34.29 | P protein subunit p29 n=5 Tax=Brugia TaxID=6278 Re... | [more] |
Pagesback to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 341.3 |
| Seed ortholog evalue | 4.2e-91 |
| Seed eggNOG ortholog | 2880.D8LNP5 |
| Preferred name | POP4 |
| Model size | 2195 |
| KEGG ko | ko:K03538 |
| KEGG Pathway | ko03008,ko03013,map03008,map03013 |
| Hectar predicted targeting category | mitochondrion |
| GOs | GO:0000172,GO:0000294,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0019222,GO:0019439,GO:0019843,GO:0022613,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042134,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099116,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905348,GO:1990904 |
| Exons | 6 |
| EggNOG free text desc. | ribonuclease P RNA binding |
| EggNOG OGs | KOG4046@1,KOG4046@2759 |
| Ec32 ortholog description | Ribonuclease P/MRP, subunit p29 |
| Ec32 ortholog | Ec-08_006350.1 |
| EC | 3.1.26.5 |
| Cds size | 807 |
| COG Functional cat. | P |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03009,ko03016,ko03029 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842511.9371586-UTR-E_fasciculatus_S2_contig8535:1..211 | 1696842511.9371586-UTR-E_fasciculatus_S2_contig8535:1..211 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8535 2..211 + |
| 1696842511.9496913-UTR-E_fasciculatus_S2_contig8535:2570..2638 | 1696842511.9496913-UTR-E_fasciculatus_S2_contig8535:2570..2638 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8535 2571..2638 + |
| 1696842512.0031514-UTR-E_fasciculatus_S2_contig8535:5050..6030 | 1696842512.0031514-UTR-E_fasciculatus_S2_contig8535:5050..6030 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8535 5051..6030 + |
| 1696842512.0138018-UTR-E_fasciculatus_S2_contig8535:6048..6178 | 1696842512.0138018-UTR-E_fasciculatus_S2_contig8535:6048..6178 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8535 6049..6178 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842511.9604065-CDS-E_fasciculatus_S2_contig8535:2638..2974 | 1696842511.9604065-CDS-E_fasciculatus_S2_contig8535:2638..2974 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8535 2639..2974 + |
| 1696842511.9713194-CDS-E_fasciculatus_S2_contig8535:3366..3522 | 1696842511.9713194-CDS-E_fasciculatus_S2_contig8535:3366..3522 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8535 3367..3522 + |
| 1696842511.9821174-CDS-E_fasciculatus_S2_contig8535:4042..4132 | 1696842511.9821174-CDS-E_fasciculatus_S2_contig8535:4042..4132 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8535 4043..4132 + |
| 1696842511.9924092-CDS-E_fasciculatus_S2_contig8535:4825..5050 | 1696842511.9924092-CDS-E_fasciculatus_S2_contig8535:4825..5050 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8535 4826..5050 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8535.16662.1 >prot_E_fasciculatus_S2_contig8535.16662.1 ID=prot_E_fasciculatus_S2_contig8535.16662.1|Name=mRNA_E_fasciculatus_S2_contig8535.16662.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=269bp
MYTRLHPALLPKGLRAVLQSTPSQRGSSSSSSSRTEAASLARFSDFVRGV
VGGTRGHRETTAAIASKLEGKMFYLESFASGQTEAQSAGARAERQAGRAA
KRGLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAATLVSKVSS
QKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAG
KTLTIPKRSCAVRLAFGDQAVTLDGGALMGRWGGGGGRQQRKTGKGRGPW
AGGGSDDPAALPLPTAAL* back to topmRNA from alignment at E_fasciculatus_S2_contig8535:2..6178+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig8535.16662.1 ID=mRNA_E_fasciculatus_S2_contig8535.16662.1|Name=mRNA_E_fasciculatus_S2_contig8535.16662.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6177bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8535:2..6178+ (Ectocarpus fasciculatus EfasUO2)
AGACACCCCGCTACGCAGGTGCGAGGTCTGCTGACAAACGTGCGCTCGAT
GACCTGGATGCCTTGTTCCGCGCTGTGCCCGATGAGGCAGCGGCGTCTAG
CTCTCGGCCTGCCAAGAAGGTTCGATCGGCGGCAGACACGGCACAAGCAA
GCAGCAGCAGAGGCAACAGCAGCCGTGCTTGTTCTTTGAGCGGCGCCGGG
GCCAAATGGGGTGAGAGACATTAGACAGATTATCTTTTGACAACACGAAG
GCGGCAGGGAACATGCTTTTGGATTCACCCCCCAAGGGTGATGCTGGGGT
AGGGAGTAGTGAGTGACCAGCTGCTGCTGGCGACAGCGATGGCCAACTGA
TGCTGCTACAAAATCGTCTGGCCTCAAGAACAGGACAGCCGGTACCTGCT
CTCGTGGTGCCCGTAGCGGGCGCAATCTGTAGAGTGCTACACGCCGGCAT
ACATGCAGCGGTCTTGAGGGTGTAGGTATATACTGATGCTGATGGAGTCT
TGTACGTTAGTCTAGGGAAACGTTACTTGTGTACAGGCAAGCCAGCGCCG
CAGGTTGCTTAAGATACCACACCCCCTGGACCGACTTCAAAGCCCGATTT
ACACCAACGAAGACGACAACAGCAGTTCTGTTGGTGTCTATAATGGCGGC
GCGGGACCCCATCTCGTCGAGATCTTTCCGAAAACGAAGATACCTTTCGG
TTATTGCCATTGCCATCCTCTTCGTCGTGGAGTAATCAAGCTTGAGCTTT
GAATGTCGGCCCAGGGGGTGTGGTATCTTACGCAACCTACAGCAGTGCGC
AAGGAAACGCTCAAGATTTCAATAAAATGATGGCCGAAGACATCCGACAC
GGTTGACGGTCTCTCCCAACGTAACCGGCTAGACTTATGGGACAGAGGAA
GCATAAACAAAACTTGAGCAGAGTTCAAATTCCTTCAAAAACAAGGAGGC
CCTGAGAAGTTTGCTGCAAAAATCACAGCCCAAACTATAACCAGAAACAA
ACAGAAAATGGAACGGGAGAGAAAAAAATGGAATTTCCTCGCCCCCTTCC
TTAACCGTAACTCTGAAGGGTAGCTTTGCGGTCTTGTGTGGTGGGGGGGG
GCACCAGAGTACTCCGAGATAGAATTGCCGTGAAAGCACGAGTGACAGAG
TGGGTCAGCAATCCTGCTACGCGTATTGCTATTGCTCGCCAAGGCCGCGT
GCACCAAGCGCGACCTGCTGATTCTTGGCGTAGTTTGCGTACGGCCACCA
GGACGACGATCTTCCCCAACCCCCGCTTTACGGTCACGCTGCACGAGCTC
ATTCAAGTGTTGAATGTTTCCCGAGCTTCCTTCCATCAACACGCTCTTTA
AGGTATTGTAGCAATCGGCCTGGGGATAGCTGGTACGCGGGATTCCCGAA
TATGTAGTACGGAACGCCTGCTGCGAGTGTTGAAGTCACTGCTGCGTTAT
TCCACTCTCCCCCAGCATCGCAACGTCGTGGACACTACCAAGCATGTGAC
CCACAGCTGCCGAATGGCACCATCCGGTGTCTACAGCCTGGTATTGTAAG
GCGTGCTTCCGCTTCCAACCGCTGTACCTAAGTCTTATCTTGCTCCACGG
ACGAGCAATCGCACGTATTGTACCGTCGATTAAAAGCCCCCCCAGCACCT
GTCAAGAGCAGCCAAATGGCATTAAAAGAAGACGTCAATCTTTGGGAGGG
TCGCTTGGTGTTGTAAGTCGAGCACAAGTTACGCCCACCTTTCGTGAATG
GCCTCCCATGGTCGTGAGGTTGAAGACCTCGCCAGCCTTGGACTCAACGA
CGTGATTGGGCGTGGCGCCGCCGCTGAAGTCTGACCCACTGCAGTCTGAG
CCGCGATGCTTTCGGCAGTCTTGTGTGCTTCGTTCGTCTCCGCTGTGTTG
TGCGTCGCCGTAGCTCTAACGCAGGAATGGCGTGCGCTTTGTGCGTGATC
ACGGCTATTCCACACCGGTGTGATATACCAGGGCTTCGTGGGTATGTGTG
CAGCTCAGCGTTCGGGGTGTGGTATCTTCTGTGACCGTGTCATGTATCGA
TGCTTTCGTCTTTCCAGGCCGACACAACATGTCACACGGGTTTTGTGTAC
ATTTTCGTTAGGGGTGTGGTATCTTCTGTGGGTCGCATTATGTCGCCTGC
GGTATGTCCTTCAGATCACCGCGGGCAAACATATCCCGATCACCGATGTC
CTTCTAATCACCTCGGGAAAACTTACACCGAATCACAACTGTCCTACCAA
TCAACAGGGACATACCCCTCAAAAGATCAAAAGAGCTAGATCGATCTGCC
AAAATGCGATTGCTTGCGAAAGGTAAGATCCGATGAGACGTGCCTGCTCG
TTCGTGCACATTCCTTACCTTGCCCGAATGAAGTCGTCATGTGGATGCTG
CACGTTGTTGAACCTTACTTGCATGTTGTTGAAAGTGTTGAATTGTATCA
GCGATCTTCCACGTCAACATTTCCCACCCAACTGTGCGCGCACGCACAAA
ACTTGCATCAGCAACGTTCCGCCTCATAGTTCCCCACCCAACCGTGCGCA
CGCACGAAACGGCCCGCAGAACCGCCCGCGTCAAGGAACGAGCTTGCCAG
CGCCATCACAGCGAGCGGGGTTGAGCAAGATCGGGTCATGTACACCCGCC
TGCACCCGGCTCTCCTGCCGAAAGGGCTCCGCGCAGTGTTGCAATCTACC
CCATCCCAGAGAGGCAGCAGCAGCAGCAGCAGTAGCAGGACGGAGGCGGC
ATCTTTGGCTCGATTTTCTGACTTTGTTCGGGGTGTGGTGGGAGGGACAA
GAGGGCATCGCGAGACGACAGCGGCCATAGCGTCCAAGCTCGAGGGGAAG
ATGTTTTACCTGGAGAGTTTCGCGTCTGGCCAGACAGAGGCACAGAGCGC
TGGCGCGCGGGCGGAGCGGCAGGCGGGAAGAGCGGCGAAGCGTGGCTTGA
GCGGGAAGCGCTGCAAACAGATGGTGAGAGGGCGATCTTCCAGGTGGTGA
GCCCTGAGCATGTAGATGACCATCCATGCCCAAAGAATGTTCCACGTATT
TCTCGGGGAACAGGGTTACATTACTGCTGTGCACTGGTTGCTCCTGTGTT
GACCTTTTCTTCGGACATCCATCAGGTTTCGTTTTTGTCTCCTTGCCCCC
GCTGCATCTCTTTCAACATGCTTCAGCCGTGCAACGACACCTTCTCTATC
CGCACACGCCCTACCGCGTCGGAAACGTCGGACGTCGATATGAGCCAAGA
TGACCTGTGTTTTGCTGCTGACATGTGTAGAGAGGTGGGCCGGTTGCATG
CGCTTCTGACCTATGTACCGCCGCGCTTCCGCACGTTGTGTGCATTCATA
CGGAACTATTCTCAGGGGCTGAACGCGCTGGAGGCACGGAACGGAGGCAG
TATTCCGTTCCGCGATCTGCTGGGTCTTCACGGGGTGTGGAAAAACTACG
CCGCCACGCTGGTCTCCAAGGTCTCGAGCCAGAAGGTTTTGCAGCAGAGG
ATCCTGTCAGCTGACCTGCAGGTAGATAGGCGTGCCCGACCGAGGGCCTG
GGCAAGGCTTGACCCATACCGATGTTCTATTGCACGCCTTCTCTCCCCCC
ATCCTTGTCCACCGCTCTTTCAGCACATTTCAGCAAGGCCCGACATAAAC
TGGGTCAACTATTAAGTCCTCCTTGTTGAAGGCCTGGCCCTCCGTGGAAT
CCCGTTACGGTACGGTTTCCCCGCCTGGGTCACAACAGTCTTTATTATTT
TAGTTCGCCAGACCAGGCATGGCGACTCTCGCCTCGAGCGGCCGTCTACC
CTGTCCCCTGTGCACCCCGTCCTGCATATAGGTGTTTAGCTCGATTTTGC
TGTGTACGTCCTGAAAATATTCTGGCACTTCCTTCTCATTTTTCCAAGTA
CGTCCCAGCGTAGCTACCTCATTTAGTTCCTTGCTCTTCTCCCACAACAG
CCTATTTCATTCAGATGCTGCTCATGTTTCACTGTTTTCTCTCCTGTCGG
TATCACCCCTCCCTTCGTCTTTGTGTACGTCTCTCCCTCAGGGGTGCTAC
CTTACGGTGTCGAGAGCCTCGACCTCTACTTTGGTGAACGTTGCTGGCAT
TGTGCTGCGAGAAACGGCCAACACATTCCAGGTGACTTACGCTGTTGCCG
CTGATGTCGCTTCAGTACTTTAGTCGGCTAACGTAGAGTACGCTGTATTT
GCGGTAGGCAGGTGTTCAGTAAATTCTTGTCAGCGGCATGAAATGTTGCC
CGAGCATCAACTTGCTTCGTGGTCGGAGCGCAGCGTACGTACGTGTCTGG
ATTCTTGATTCCTCCGTTCGCATTCTACCGGCTGCAGCGCAGCAGCCTGT
GGCTTTCCCAGTATCAGCTTCGCGTTGCCTCGTATTGCTAGGCTGCTCTT
TGATCCCATGTTTCACTGAAAACGGGGGGTCAGGTTTGGTGGCGCACAGT
TTCTCAGGTTGGGTCTGTCTCCTCTCCTCACTGAGTATGGTCCTGCCCAG
ACATGGCTTACGACCCGGTGTGCGCTAAAAGAGCCGGATGACACGACAAA
TCAACCGTTGTAGTGGTACTCGCTACACGAGGCTTTCGCACCCTGTTGAG
ATAAAGGACTTCCTAGCTGTATTTTTGCACACGGTACCGTTTTCGCAGTT
CGTTACGGAGCTCTCGGAAAACTCCTGAAATTGGCTCTCAACTTCACGTC
CCAGTTGTTGCTTGTGCTCCGTCTCCGAATTGATTGTTCGGCCAGTTCCC
CCGAGCGACTATTATAGCAACGTAATGCCCCCCTGCTTTCCCTGCTATGC
GTCTCGCGTGCTAACGTCGCACAGCTGGTCACGCCTGCGGGCAAGACGTT
GACAATCCCCAAGCGATCGTGTGCCGTTCGCCTCGCCTTTGGCGATCAAG
CGGTTACCCTCGATGGCGGGGCTTTGATGGGCCGGTGGGGAGGAGGAGGA
GGACGGCAACAACGAAAAACAGGGAAAGGGCGGGGTCCCTGGGCGGGAGG
AGGTTCAGACGACCCCGCCGCTCTCCCGCTCCCGACGGCCGCGTTGTAGC
GTTGATCCTGCAGGCTTTGTCTCTCGCCTGTTGATGGCGTGGGTCGGTCG
ATCTGAAGGATGGGTGGGTTGTCGCCGTTGGTCTCAGGGGAAACAGCACG
GCTTGCCGGGAGGGGCATAGAGGGGGGCCGCTAGTGGAGTGAAAAGAGGT
ATGTACTTCGTGTAAGGGGAGGGTGCACAGAGGCGAAACGCTTGCGACGC
GCCAAGTTGCCGCTGGCCTGTACGTCGGGCATGCAAAGCATGTCATATAA
GGTGCACAGACAGCGAAGCATATGAGGTTCTAAAGTGTGGCTAGACAGGA
GCCTGCCTGTACGTGGGGCATGCGAAGGTTAAGGCCGTTGCAGTAGAGAG
AGAGAGATTGCGCTCTCCCGCACCGTACCAGCTGCGTGGCCACGTGATGT
CGGACGCTGTCACCTCGCGCTGGATGCCCGCAGCCTCGCATGTCTCGCAT
GTCGTCTCGCATGTCTCGCATGTCTCGCATGTCACAGACGAAACGCACCC
GTCTCCGAGGTTGTCTTGGGGTGGTTGCGATGAAGTCCAGCGACAGGGCC
GACTCCTCCCCGTTGTCCGTTCAAAAGCACCCCGGGGCCCCCGTTCCGTT
CGTGTCGGGCCAGAAAGCGCTTTATGAACCTCCCCGAAGCCGGGGGCGCT
CGTTGTATTTTGAGGCTGCCGGAATAGTCTGGGGCGAACGCCGCGCTCGA
CATTGGTGGAGAGCCACGCCGCGTGCTGTCGCAGGCTTTGCATGCGCCCC
CGAGGTTTTTATTGCTGTGACTGAGTTCCGAAGAGCAATCGGCTCTTTCC
GAGTTCAGTGTGTTCAGCGAATTCTTCGGCATCTCCTTGTGCCTTTCCTG
CTGCTTTTCTCATTTTTTTTTCCTTCGCGCGGGACTTTTTTATTGGTGCT
GTATTGTTTTGCTTTTGCGTTGTTGCAGGATTGCATGTGACAATAGAAAA
AAAAAATCCGCGTTTTGTAAGTAGGGGGGGCGGGACGCACTCAATAGAGG
CAACAAAAGGTTTTCAGCGTTAAGAAAGAGCAATTCAACATTCTACAATC
GCGCAGAGTACACAACACTTGGAGAAAGAAGTGTCCTTAACTCCGAATAA
GTCATTTACCAGCCGGTGACATCGTGC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig8535:2..6178+ >mRNA_E_fasciculatus_S2_contig8535.16662.1 ID=mRNA_E_fasciculatus_S2_contig8535.16662.1|Name=mRNA_E_fasciculatus_S2_contig8535.16662.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=807bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8535:2..6178+ (Ectocarpus fasciculatus EfasUO2)
ATGTACACCCGCCTGCACCCGGCTCTCCTGCCGAAAGGGCTCCGCGCAGT
GTTGCAATCTACCCCATCCCAGAGAGGCAGCAGCAGCAGCAGCAGTAGCA
GGACGGAGGCGGCATCTTTGGCTCGATTTTCTGACTTTGTTCGGGGTGTG
GTGGGAGGGACAAGAGGGCATCGCGAGACGACAGCGGCCATAGCGTCCAA
GCTCGAGGGGAAGATGTTTTACCTGGAGAGTTTCGCGTCTGGCCAGACAG
AGGCACAGAGCGCTGGCGCGCGGGCGGAGCGGCAGGCGGGAAGAGCGGCG
AAGCGTGGCTTGAGCGGGAAGCGCTGCAAACAGATGGGGCTGAACGCGCT
GGAGGCACGGAACGGAGGCAGTATTCCGTTCCGCGATCTGCTGGGTCTTC
ACGGGGTGTGGAAAAACTACGCCGCCACGCTGGTCTCCAAGGTCTCGAGC
CAGAAGGTTTTGCAGCAGAGGATCCTGTCAGCTGACCTGCAGGGGTGCTA
CCTTACGGTGTCGAGAGCCTCGACCTCTACTTTGGTGAACGTTGCTGGCA
TTGTGCTGCGAGAAACGGCCAACACATTCCAGCTGGTCACGCCTGCGGGC
AAGACGTTGACAATCCCCAAGCGATCGTGTGCCGTTCGCCTCGCCTTTGG
CGATCAAGCGGTTACCCTCGATGGCGGGGCTTTGATGGGCCGGTGGGGAG
GAGGAGGAGGACGGCAACAACGAAAAACAGGGAAAGGGCGGGGTCCCTGG
GCGGGAGGAGGTTCAGACGACCCCGCCGCTCTCCCGCTCCCGACGGCCGC
GTTGTAG back to top
|