mRNA_E_fasciculatus_S2_contig8521.16657.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8521.16657.1
Unique NamemRNA_E_fasciculatus_S2_contig8521.16657.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8521.16657.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.160e-10
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = -2 
Query:  198 DGSKRGVYRGEAASAQGAKGKRGGVKAXXXXXXXLRRGRSRGLPVGGVTGDGS 356
            D SKRG +RG+AASAQGAKGKRG VKA       LRRGRSRGLPVGGV GDGS
Sbjct: 1139 DSSKRGDHRGDAASAQGAKGKRG-VKAPRGGGG-LRRGRSRGLPVGGVAGDGS 1189
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8521.16657.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Protein8.160e-1075.47kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8521contigE_fasciculatus_S2_contig8521:3571..3935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842511.5742788-CDS-E_fasciculatus_S2_contig8521:3570..39331696842511.5742788-CDS-E_fasciculatus_S2_contig8521:3570..3933Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8521 3571..3933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8521.16657.1prot_E_fasciculatus_S2_contig8521.16657.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8521 3571..3933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8521.16657.1

>prot_E_fasciculatus_S2_contig8521.16657.1 ID=prot_E_fasciculatus_S2_contig8521.16657.1|Name=mRNA_E_fasciculatus_S2_contig8521.16657.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
AFPRRVSTDSPPATMPLPLPPCSTGVGGGEAFLPTTASSSPSSVIAAQSP
LFRNADRFPATAAAVDEPSPVTPPTGRPRLRPRRRPPPPPLAAFTPPLLP
FAPCALAASPRYTPRLLPSPS
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mRNA from alignment at E_fasciculatus_S2_contig8521:3571..3935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8521.16657.1 ID=mRNA_E_fasciculatus_S2_contig8521.16657.1|Name=mRNA_E_fasciculatus_S2_contig8521.16657.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=365bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8521:3571..3935+ (Ectocarpus fasciculatus EfasUO2)
GCCTTCCCGCGACGGGTCTCCACCGACAGTCCCCCGGCGACGATGCCTCT
GCCGCTTCCCCCTTGCAGCACGGGAGTCGGTGGCGGCGAAGCTTTCTTGC
CGACTACTGCGTCCTCGTCACCTTCCTCCGTCATCGCAGCGCAGTCTCCT
CTCTTTCGTAATGCCGACCGCTTCCCTGCCACCGCGGCGGCGGTCGACGA
ACCGTCACCAGTCACCCCGCCTACCGGCAGACCTCGACTCCGACCCCGCC
GGAGGCCTCCTCCTCCTCCTCTTGCCGCTTTTACGCCTCCTCTTTTGCCC
TTTGCACCCTGCGCGCTAGCAGCTTCCCCTCGATATACTCCTCGCTTGCT
GCCGTCACCGTCGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8521:3571..3935+

>mRNA_E_fasciculatus_S2_contig8521.16657.1 ID=mRNA_E_fasciculatus_S2_contig8521.16657.1|Name=mRNA_E_fasciculatus_S2_contig8521.16657.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8521:3571..3935+ (Ectocarpus fasciculatus EfasUO2)
GCCTTCCCGCGACGGGTCTCCACCGACAGTCCCCCGGCGACGATGCCTCT
GCCGCTTCCCCCTTGCAGCACGGGAGTCGGTGGCGGCGAAGCTTTCTTGC
CGACTACTGCGTCCTCGTCACCTTCCTCCGTCATCGCAGCGCAGTCTCCT
CTCTTTCGTAATGCCGACCGCTTCCCTGCCACCGCGGCGGCGGTCGACGA
ACCGTCACCAGTCACCCCGCCTACCGGCAGACCTCGACTCCGACCCCGCC
GGAGGCCTCCTCCTCCTCCTCTTGCCGCTTTTACGCCTCCTCTTTTGCCC
TTTGCACCCTGCGCGCTAGCAGCTTCCCCTCGATATACTCCTCGCTTGCT
GCCGTCACCGTCG
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