mRNA_E_fasciculatus_S2_contig852.16654.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig852.16654.1
Unique NamemRNA_E_fasciculatus_S2_contig852.16654.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB ((POZ) domain containing 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPG9_ECTSI)

HSP 1 Score: 837 bits (2163), Expect = 1.030e-301
Identity = 454/561 (80.93%), Postives = 472/561 (84.14%), Query Frame = 1 
Query:   94 MVDGDTCDVTFVVTSAASAPSSSEGLIPQPAGTPERARTRTKTLEQGSHRGDSCSDKTVSGTGIADNDTAGSCENRERQRGEXXXXXXXXXXXXXXXXXERETDREGVEKLAQVTPDAGTTAVTTTGSVPTTKLNTCSPAHDTSGNTSSSLGTTSREFRCHRVFFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMTYVYTGKVSVDAANVMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHADPTRWTGDCLMARPRGKRLAWDASSLAAGAWTADDNRTG--------ELTTSVGDWVGVYGNRVMRSGFHRWSVRANKIGRTEKWSAWAAIVGIARPHSQNPSRPYLPVTGFIAGTGSSKLGGNTAVDEYSSTSIADGDVVTVVYDADGGVVTFFVNGTSLGQAYSGLSGPNVAAIAVNAAGAQWECVDC 1752
            MVDGDTCDVTFVVTS ASAPSSSEGLIPQPAGTPERAR RT+TLEQGSHRGD+CS K VSG GIAD+DTAGSCENRER RGE           X X   E E+DREG +KL Q T D GT AVTT+GSV +TKL++CSPAHDTSGNTSSSLGTTSREFRCHRV FASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIM YVYTGKVSVDAANVMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIK+NTPRVLKSESFLEL   QVLSLVREGELQV+EAELFKAVQAWVSRDTAERRR VDE   LSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHADPTRWTGDCL ARPRGKRLAWDASSLAAGAWTADDNRTG        E T S     G  G     S            G +   +A++   G       + +RPYLPVTGFIAGTGSSKLGGNTAVDEYSSTSI DGDVVTV+YDADGGVVTFFVNGTSLGQAYSGLSGPNVAAIAVNAAGAQWECVDC
Sbjct:    1 MVDGDTCDVTFVVTSVASAPSSSEGLIPQPAGTPERARPRTETLEQGSHRGDNCSGKNVSGAGIADSDTAGSCENRERHRGEGQEALAGGAGGXTXGG-ELESDREGADKLTQGTTDVGTAAVTTSGSVSSTKLSSCSPAHDTSGNTSSSLGTTSREFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDAANVMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKDNTPRVLKSESFLELRCQQVLSLVREGELQVNEAELFKAVQAWVSRDTAERRRHVDE---LSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHADPTRWTGDCLTARPRGKRLAWDASSLAAGAWTADDNRTGLGFIGGPSERTRSAEPRSGALGQPSSESPDRIRRALEVVAGHSTLRNAFSCSTGCP-----STARPYLPVTGFIAGTGSSKLGGNTAVDEYSSTSITDGDVVTVMYDADGGVVTFFVNGTSLGQAYSGLSGPNVAAIAVNAAGAQWECVDC 552
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8F4_9PHAE)

HSP 1 Score: 719 bits (1856), Expect = 2.500e-256
Identity = 381/468 (81.41%), Postives = 392/468 (83.76%), Query Frame = 1 
Query:   16 MEGKGGSRGCRCDVDHSIARLNGLFEMVDGDTCDVTFVVTSAASAPSSSEGLIPQPAGTPERARTRTKTLEQGSHRGDSCSDKTVSGTGIADNDTAGSCENRERQRGEXXXXXXXXXXXXXXXXXERETDREGVEKLAQVTPDAGTTAVTTTGSVPTTKLNTCSPAHDTSGNTSSSLGTTSREFRCHRVFFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMTYVYTGKVSVDAANVMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASC-------------------------------LSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHADPTRWTGDCLMARPRGKRLAWDASSLAAGAWTADDNRTGE 1326
            MEG GGS+GCRCDVDHS+ARLNGLFEMVD DTCDVTFVVTS ASA SSSEGL+PQPAGTPERAR RT+TLEQGSHRGD+CSDK VSG GIADN  AGSCENRERQRGE                 E ET REG EKL Q T   GTTAV T  SV +TKL+TCSPAHDTSG+TSSSLGTTSREFRCHRV FASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIM YVYTGKVSVDAANVMDIFSLAHRFGMGELLKACAEVLDEC+NCDDVCRVLEAAEYYGHDELAAKCWDLIK+NTPRVLKSESFL+L   QVLSLVREGELQVDEAELFKAVQAWVSRDTAERRR VDEASC                               LSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHADPTRWTGDCLMARPRGKRLAWDASSLAAGAWT DDNRTGE
Sbjct:    1 MEGTGGSKGCRCDVDHSVARLNGLFEMVDDDTCDVTFVVTSVASAQSSSEGLLPQPAGTPERARPRTETLEQGSHRGDNCSDKNVSGAGIADNYRAGSCENRERQRGEGQEAWDGGGRGATGGG-ELETAREGAEKLNQGTTGVGTTAVATXSSVSSTKLSTCSPAHDTSGSTSSSLGTTSREFRCHRVLFASCSAYFRALLYGGMSESETRRVELRDVTPEGFEAIMRYVYTGKVSVDAANVMDIFSLAHRFGMGELLKACAEVLDECLNCDDVCRVLEAAEYYGHDELAAKCWDLIKDNTPRVLKSESFLDLRSQQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRHVDEASCVRHAQWFAEVLCSAVLQKCARGRVVPPSQHRLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHADPTRWTGDCLMARPRGKRLAWDASSLAAGAWTTDDNRTGE 467
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB/POZ (domain-containing protein 9 n=2 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UQ67_ACIRT)

HSP 1 Score: 154 bits (389), Expect = 3.330e-36
Identity = 86/221 (38.91%), Postives = 128/221 (57.92%), Query Frame = 1 
Query:  559 REFRCHRVFFASCSAYFRALLYGGMSESETR-RVELRDVTPEGFEAIMTYVYTGKVSVDAAN---VMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHAD 1209
            + F  HRV  A+   YFRALLYGGM ES+ +  + L D T E F  ++ Y+YTG+VS+ +     ++D  SLAHR+G  +L  + +E L   +N  +VC + + A  Y   +L+  C   I  N P VL SE FL L  L +L++VR       E E+F+A+  W   ++AE+   V  A       RLPLMSL E+++VVRP+ L++ DA+LDA+   ++
Sbjct:   84 KRFPAHRVILAARCQYFRALLYGGMKESQPQAEIPLEDTTAEAFSMLLQYIYTGRVSLSSEREEVLLDFLSLAHRYGFEQLEDSTSEYLRTILNTHNVCLIFDVASLYSLRKLSTTCCTYIDRNAPDVLASEGFLSLSKLALLTVVRRDSFAAPEKEIFQALCRWCRHNSAEKPEEVMGA------VRLPLMSLAEMLNVVRPSGLLSPDALLDAIKTRSE 298
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: SPRY (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSB5_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.010e-35
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1 
Query: 1534 SSKLGGNTAVDEYSSTSIADGDVVTVVYDADGGVVTFFVNGTSLGQAYSGLSGPNVAAIAVNAAGAQWECVDC 1752
            SSKLGGNTAVD YSSTSI DGDVVTVVYDADGGV+TFFVNGTSLGQAYSGLSGPNVAAIAVNAAGAQWECVDC
Sbjct:    4 SSKLGGNTAVDTYSSTSITDGDVVTVVYDADGGVLTFFVNGTSLGQAYSGLSGPNVAAIAVNAAGAQWECVDC 76
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB/POZ (domain-containing protein 9 n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7XEI7_9AMPH)

HSP 1 Score: 149 bits (375), Expect = 1.300e-34
Identity = 84/221 (38.01%), Postives = 123/221 (55.66%), Query Frame = 1 
Query:  559 REFRCHRVFFASCSAYFRALLYGGMSESETR-RVELRDVTPEGFEAIMTYVYTGKVSVDAAN---VMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHAD 1209
            R F  HRV  A+   YFRALLYGGM ES+ +  + L D TPE F  ++ Y+YTG+V++       ++D  SLAH++G  EL  + +E L   +N  +VC + + A  Y   +L   C   I  N   VL SE FL L    +L++V        E ++F+A+ +W   +  E    V +A       RLPLMSL EL++VVRP+ L++ DAILDA+   ++
Sbjct:   45 RRFPAHRVILAARCQYFRALLYGGMRESQPKAEIPLEDTTPEAFTMLLKYIYTGRVTLRDEKEEVLLDFLSLAHKYGFPELEDSTSEYLCTILNVQNVCMIYDVASLYSLPKLTCTCCMFIDRNAQEVLSSEGFLTLSKAALLNIVTRDSFAAPEKDIFQALTSWCKNNGNENHTEVMQA------VRLPLMSLTELLNVVRPSGLLSPDAILDAIKIRSE 259
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB/POZ (domain-containing protein 9 n=6 Tax=Tetrapoda TaxID=32523 RepID=A0A6P8PVN7_GEOSA)

HSP 1 Score: 148 bits (374), Expect = 1.680e-34
Identity = 84/221 (38.01%), Postives = 122/221 (55.20%), Query Frame = 1 
Query:  559 REFRCHRVFFASCSAYFRALLYGGMSESETR-RVELRDVTPEGFEAIMTYVYTGKVSVDAAN---VMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHAD 1209
            R F  HRV  A+   YFRALLYGGM ES+ +  + L D TPE F  ++ Y+YTG+V++       ++D  SLAH++G  EL  + +E L   +N  +VC + + A  Y   +L   C   I  N   VL SE FL L    +L++V        E ++F+A+ +W   +  E    V  A       RLPLMSL EL++VVRP+ L++ DAILDA+   ++
Sbjct:   45 RRFPAHRVILAARCQYFRALLYGGMRESQPKAEIPLEDTTPEAFTMLLKYIYTGRVTLRDEKEEVLLDFLSLAHKYGFPELEDSTSEYLCTILNVQNVCMIYDVASLYSLPKLTCTCCMFIDRNAQEVLSSEGFLTLSKAALLNIVMRDSFAAPEKDIFQALTSWCKSNGKENHTEVMHA------IRLPLMSLTELLNVVRPSGLLSPDAILDAIKIRSE 259
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB/POZ (domain-containing protein 9 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U5F6_OWEFU)

HSP 1 Score: 147 bits (372), Expect = 4.030e-34
Identity = 79/216 (36.57%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:  562 EFRCHRVFFASCSAYFRALLYGGMSESE--TRRVELRDVTPEGFEAIMTYVYTGKVSV---DAANVMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAV 1194
            EF  HRV  AS S YFRALL+GG+ ES+     +EL+D TP+ F  ++ Y+YTG+V++      N++D+  L+H++G  EL  + ++ L   +N  +VC + + A  YG   L   C++ I  N P VL+ E+FL L    +  ++        E ++F A++ W     +ER   VD A  +S   RLPLM++ +L++ VRPT  ++ D+ILDA+
Sbjct:   46 EFHAHRVILASRSDYFRALLFGGLRESQPGVSTIELKDTTPDAFRHLLKYIYTGRVNLADMKEENLLDVLGLSHQYGFLELESSISDYLKATLNIRNVCFIYDLANMYGLASLCKTCYEFIDRNAPDVLRGEAFLSLSGPALYDIISRDSFCAAEIDIFNAIKVW-----SERNPEVDVAPIMS-VVRLPLMTIPQLLNTVRPTEFVSPDSILDAI 255
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB/POZ (domain-containing protein 9 n=5 Tax=Acipenseroidei TaxID=186622 RepID=A0A444U0N6_ACIRT)

HSP 1 Score: 147 bits (370), Expect = 6.050e-34
Identity = 83/221 (37.56%), Postives = 125/221 (56.56%), Query Frame = 1 
Query:  559 REFRCHRVFFASCSAYFRALLYGGMSESETR-RVELRDVTPEGFEAIMTYVYTGKVSVDAAN---VMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHAD 1209
            + F  HRV  A+   YFRALLYGGM ES+ +  + L D T E F  ++ Y+YTG+VS+ +     ++D  SLAHR+G  +L  + +E L   +N  +VC + + A  Y   +L+  C   I  NT  VL SE FL +    +L +VR       E E+F+A+  W   ++ E    V  A       RLPLMSL+E+++VVRP+ L++ DA+LDA+   ++
Sbjct:   45 KRFPTHRVILAARCHYFRALLYGGMKESQPQAEIPLEDTTAEAFSMLLQYIYTGRVSMSSEREEVLLDFLSLAHRYGFEQLEDSTSEYLRTILNTHNVCLIFDVASLYSLRKLSTSCCTYIDRNTADVLASEGFLSMSKPALLIMVRRDSFAAPEKEIFQALCCWCRHNSTELPEEVMGA------VRLPLMSLEEMLNVVRPSGLLSPDALLDAIKIRSE 259
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTB (domain-containing protein (Fragment) n=2 Tax=Artiodactyla TaxID=91561 RepID=A0A4U1EJ30_MONMO)

HSP 1 Score: 140 bits (352), Expect = 6.990e-34
Identity = 79/221 (35.75%), Postives = 120/221 (54.30%), Query Frame = 1 
Query:  559 REFRCHRVFFASCSAYFRALLYGGMSESETR-RVELRDVTPEGFEAIMTYVYTGKVSVDAAN---VMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHAD 1209
            + F  HRV  A+   YFRALLYGGM ES+    + L+D T E F  ++ Y+YTG+ ++       ++D  SLAH++G  EL  + +E L   +N  +VC   + A  Y   +L + C   +  N   VL SE FL L    +L++V        E ++F A+  W   ++ E    + +A       RLPLMSL EL++VVRP+ L++ DAILDA+   ++
Sbjct:   54 KRFPAHRVILAARCQYFRALLYGGMRESQPEAEIPLQDTTAEAFTMLLKYIYTGRATLTDEKEEVLLDFLSLAHKYGFPELEDSTSEYLCTILNIQNVCMTFDVASLYSLPKLTSMCCMFMDRNAQEVLSSEGFLSLSKTALLNIVLRDSFAAPEKDIFLALLNWCKHNSKENHAEIMQA------VRLPLMSLTELLNVVRPSGLLSPDAILDAIKVRSE 268
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Match: BTBD9 (protein (Fragment) n=1 Tax=Nyctiprogne leucopyga TaxID=382315 RepID=A0A7L4CGN3_9AVES)

HSP 1 Score: 141 bits (355), Expect = 1.520e-33
Identity = 80/221 (36.20%), Postives = 119/221 (53.85%), Query Frame = 1 
Query:  559 REFRCHRVFFASCSAYFRALLYGGMSESETR-RVELRDVTPEGFEAIMTYVYTGKVSVDAAN---VMDIFSLAHRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKENTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAERRRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHAD 1209
            + F  HRV  A+   YFRALLYGGM ES+    + L+D T E F  ++ Y+YTG+ ++       ++D  SLAH++G  EL  + +E L   +N  +VC   + A  Y   +L   C   +  N   VL SE FL L    +LS+V        E ++F+A+  W   +  E    + +A       RLPLMSL EL++VVRP+ L++ DAILDA+   ++
Sbjct:   81 KRFPAHRVILAARCHYFRALLYGGMRESQPEAEIPLQDTTAEAFTMLLKYIYTGRATLRDEKEEVLLDFLSLAHKYGFPELEDSTSEYLCTILNIQNVCMTFDVASLYSLPKLTCMCCMFMDRNAQEVLSSEGFLSLSKAALLSIVLRDSFAAPEKDIFQALMNWCKHNPKENHAEIMQA------VRLPLMSLTELLNVVRPSGLLSPDAILDAIKIRSE 295
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig852.16654.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
BTB1.030e-30180.93(POZ) domain containing 9 n=1 Tax=Ectocarpus silic... [more]
BTB2.500e-25681.41domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
BTB/POZ3.330e-3638.91domain-containing protein 9 n=2 Tax=Acipenser ruth... [more]
SPRY1.010e-3595.89domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
BTB/POZ1.300e-3438.01domain-containing protein 9 n=2 Tax=Gymnophiona Ta... [more]
BTB/POZ1.680e-3438.01domain-containing protein 9 n=6 Tax=Tetrapoda TaxI... [more]
BTB/POZ4.030e-3436.57domain-containing protein 9 n=1 Tax=Owenia fusifor... [more]
BTB/POZ6.050e-3437.56domain-containing protein 9 n=5 Tax=Acipenseroidei... [more]
BTB6.990e-3435.75domain-containing protein (Fragment) n=2 Tax=Artio... [more]
BTBD91.520e-3336.20protein (Fragment) n=1 Tax=Nyctiprogne leucopyga T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig852contigE_fasciculatus_S2_contig852:4233..9751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score841.3
Seed ortholog evalue2.8e-241
Seed eggNOG ortholog2880.D7FPG9
Model size1755
KEGG koko:K10480
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.circadian sleep/wake cycle, non-REM sleep
EggNOG OGsKOG4350@1,KOG4350@2759
Cds size1740
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig852.16654.1prot_E_fasciculatus_S2_contig852.16654.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig852 4248..9751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842511.056851-UTR-E_fasciculatus_S2_contig852:4232..42471696842511.056851-UTR-E_fasciculatus_S2_contig852:4232..4247Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig852 4233..4247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842511.0682714-CDS-E_fasciculatus_S2_contig852:4247..49681696842511.0682714-CDS-E_fasciculatus_S2_contig852:4247..4968Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 4248..4968 +
1696842511.0812519-CDS-E_fasciculatus_S2_contig852:5264..54541696842511.0812519-CDS-E_fasciculatus_S2_contig852:5264..5454Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 5265..5454 +
1696842511.093533-CDS-E_fasciculatus_S2_contig852:6176..63421696842511.093533-CDS-E_fasciculatus_S2_contig852:6176..6342Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 6177..6342 +
1696842511.1050527-CDS-E_fasciculatus_S2_contig852:6915..70621696842511.1050527-CDS-E_fasciculatus_S2_contig852:6915..7062Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 6916..7062 +
1696842511.11641-CDS-E_fasciculatus_S2_contig852:7735..78231696842511.11641-CDS-E_fasciculatus_S2_contig852:7735..7823Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 7736..7823 +
1696842511.1289506-CDS-E_fasciculatus_S2_contig852:8259..83111696842511.1289506-CDS-E_fasciculatus_S2_contig852:8259..8311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 8260..8311 +
1696842511.139904-CDS-E_fasciculatus_S2_contig852:8887..89971696842511.139904-CDS-E_fasciculatus_S2_contig852:8887..8997Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 8888..8997 +
1696842511.1509118-CDS-E_fasciculatus_S2_contig852:9485..97511696842511.1509118-CDS-E_fasciculatus_S2_contig852:9485..9751Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig852 9486..9751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig852.16654.1

>prot_E_fasciculatus_S2_contig852.16654.1 ID=prot_E_fasciculatus_S2_contig852.16654.1|Name=mRNA_E_fasciculatus_S2_contig852.16654.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=580bp
MEGKGGSRGCRCDVDHSIARLNGLFEMVDGDTCDVTFVVTSAASAPSSSE
GLIPQPAGTPERARTRTKTLEQGSHRGDSCSDKTVSGTGIADNDTAGSCE
NRERQRGERQESGAGGGGGGAAGAGERETDREGVEKLAQVTPDAGTTAVT
TTGSVPTTKLNTCSPAHDTSGNTSSSLGTTSREFRCHRVFFASCSAYFRA
LLYGGMSESETRRVELRDVTPEGFEAIMTYVYTGKVSVDAANVMDIFSLA
HRFGMGELLKACAEVLDECMNCDDVCRVLEAAEYYGHDELAAKCWDLIKE
NTPRVLKSESFLELPWLQVLSLVREGELQVDEAELFKAVQAWVSRDTAER
RRRVDEASCLSRHFRLPLMSLKELMSVVRPTNLIAADAILDAVTYHADPT
RWTGDCLMARPRGKRLAWDASSLAAGAWTADDNRTGELTTSVGDWVGVYG
NRVMRSGFHRWSVRANKIGRTEKWSAWAAIVGIARPHSQNPSRPYLPVTG
FIAGTGSSKLGGNTAVDEYSSTSIADGDVVTVVYDADGGVVTFFVNGTSL
GQAYSGLSGPNVAAIAVNAAGAQWECVDC*
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mRNA from alignment at E_fasciculatus_S2_contig852:4233..9751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig852.16654.1 ID=mRNA_E_fasciculatus_S2_contig852.16654.1|Name=mRNA_E_fasciculatus_S2_contig852.16654.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig852:4233..9751+ (Ectocarpus fasciculatus EfasUO2)
TAGAACAGGCGCGTCATGGAGGGGAAAGGCGGGAGCAGGGGCTGTCGCTG
CGATGTGGACCATTCCATCGCGAGGCTGAATGGCTTGTTTGAGATGGTGG
ATGGTGATACGTGCGACGTAACGTTTGTCGTGACGTCCGCGGCGTCGGCT
CCGTCCAGCTCTGAAGGACTCATTCCACAGCCGGCGGGCACACCAGAGCG
GGCAAGAACAAGGACTAAAACGCTAGAACAAGGCTCACACAGAGGCGACA
GCTGCAGTGACAAGACTGTCTCGGGTACTGGAATCGCCGATAATGATACT
GCTGGTAGTTGTGAAAATAGGGAGAGGCAGCGGGGCGAGCGCCAAGAGTC
CGGGGCCGGAGGAGGAGGAGGGGGAGCAGCAGGGGCAGGAGAGCGGGAAA
CCGACAGGGAAGGAGTGGAGAAGCTAGCCCAAGTAACACCGGACGCCGGC
ACAACAGCGGTGACTACCACCGGTTCTGTGCCAACCACGAAGTTGAACAC
CTGTTCTCCTGCTCACGATACCTCGGGCAACACCAGCAGCAGCCTGGGCA
CTACCAGTAGAGAGTTCAGGTGCCACCGTGTCTTTTTCGCGTCGTGCTCG
GCGTACTTCCGCGCTCTGCTGTACGGTGGCATGAGCGAATCGGAGACAAG
GAGGGTCGAGTTGAGAGACGTCACGCCGGAAGGGTTCGAGGCCATCATGA
CATACGTCTACACCGGAAAAGTTAGCGTGGATGCGGGTAAGTGAGAGGGA
GATAGATCGCGGAATACCGGCCGCGGGAATATGATTGTAGGACAAACTAT
TCCAGCGGTGTTATCTGCAGTAAGTAGTTGGGTACCAGCAGTGACAGTGA
GGGGGGGACAGCGTTCATGTTATCAGAGCCTTTCAGTCGGAAGAGGAGAC
GTACTCGTTCGTTCGTGTACCTGCACCAATTTGAGTGCACCCTCACCACC
GTCGTGAAGTGAGACGCCAACCGACTCACCGAACCATACCACGCCGCGAC
CGATTCGATCACCTCCCCCCCCCGCGTTTCAGCCAACGTGATGGACATTT
TTTCGCTGGCGCACCGGTTCGGGATGGGCGAGCTCCTGAAGGCTTGCGCG
GAGGTCTTGGACGAGTGCATGAACTGCGACGATGTTTGCCGGGTGCTGGA
GGCGGCGGAGTACTACGGACACGACGAGCTTGCGGCCAAATGCTGGGATC
TCATCAAGGAGAACACGCCCAGGTGAACCAATGATCCATAACAGTCGGGG
GGGCTTTTTAAAGAAAAAATACAAGTACAAACACCGAGCTTTTATAGTGC
GGTTGTAGTCTAGTGCGGGTGATTTTGACTGGCAGATGCAATCCATCGAG
ATGGTTAATATGTTAAATAGTGAGGGTGCCCGCCATAGTGCGGGTGAAAG
CGCTTGGCAGTTTGCACGATAGTGGGCCCCCGACTGTTTGGAGATGCGCA
CTGTGTGTTGTGTTCACCTCTAGGGTTTGTGGGGTCGTCGTCTGCCGCCT
TCCGTCAGCAACAAGTTTCACCACGAGATTGAGCAAGCGCTGTGGCGTGT
GGCAGTGACTTGTGAGAGCATTGATAGGAGAAGGTAGCGTTCCACGGCAG
ACCAGGTAGAAATTGGCTATCTACGCGCCATGGACGAAGTGAGACGACGA
CGACAACAACAAATGACGAAAAATGCCCCATGATCCTCCTCTGCGTGAAC
CCTGGTGTGAACCCTGCTAGAATGCGTGGTTTCGGCCACCCGTTCTTGAC
ACGTGTGCCCGTTCCTTAGACGATATTTTCGCGCTGCAGCGTACTCAGCC
ACTCGACGCCCCCGCTCCCGCCCCAACTTCCCTCTCCCTGCGCTTCCTCA
CCCTCTCCGCGCTTTCCTCCTCTCTCCATGCATCCTCCTATACCCCCCCT
CCCCACTATGTGGTGTCTCTTCGCGACATGGCATGCGGGGCCAGGGTGTT
GAAGAGCGAGAGCTTCTTGGAGCTCCCGTGGCTGCAGGTGCTGAGCCTCG
TGAGGGAGGGAGAGCTGCAGGTGGACGAGGCCGAGCTCTTCAAGGCGGTG
CAGGCCTGGGTGTCCAGAGATACCGCCGAGAGGCGACGTCGCGTTGACGA
GGCGAGTTGTGTGTGACACGTGCAGTGGTCTGCAGTATTGTGTGGTCTGC
AATACGGTGCTGCAAAGTGTGCTTTGCGGTAGAGAGAGTATCCCCCGCCC
CCCCCGCGCAGCACATGGTGTGCCTGCTGTTGCACCTCACTCTGTACAGC
AGCAAACTGTGTCGCCGCATGCAAAGCTGCTGCGGTGTACGGGGGGGGGG
GGGGGCTCTGCTGGCGTGAGGCGGGGGTAGTTGTCCGGTGCGGGAAATAC
TGCTTGACTGCATAGCGCTCTGCGCATAAAAGCTGTGACCCCCTCTTTCT
GCTCCTCCTCCTGACGCTACGTGGTGGGGTCGTGGTGTAGCATGTCTTGC
CCCTTTCCTGCATAAGATGCAGATAACATAACATCGAAGAGTTTGATACC
CTCTTTTCTTCGAGTCCCCCCCCCACCTTCCCCATGAATCAATTGACAAA
CTCAACCAATGAAAACCCACCACGTCTTTGTGTCGAGGAAGCGCATTCCC
GCCATTTCTAATTCCGTCCCCCAATCAACTGAGTACCCCCCGCCATTCCT
TCCGCATTTTTTTTTTCATTCTCGTGGCCGCAGCTGTCCCGCCATTTCCG
CCTCCCGCTCATGTCCCTGAAAGAGCTCATGTCGGTCGTCCGGCCGACAA
ACCTGATCGCGGCAGACGCGATCCTCGATGCCGTCACGTACCACGCCGAC
CCGACAAGGTGGACGGGCGATTGCTTGATGGTGAGAGAGAAAGAGAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCCACACGGGCGCACC
ATGTGCCATCATCCCGATGCTGGGTTCTACCCACCCTCCGTTTGGCGGAC
CCACCCACCTCCTCTGCATTTTTTACAATGTTTTGTTAACACTTTAAATC
AGCGCTCGCTCGCAGCATTTCCGCCGAGTAGGAGTTCCATCCCGTAGTCA
CACTGAAGGGTTCCTCCCCCTGAGGCAGCCCCCATATCTATGAGTCATAA
CATGCCATAGAGTACTCATACATGTACAGCAGAAAATGGAGGGTACTTGA
GATGCACGTACACGCATGATGTTACCGGTAGTTCAAGATAACCAGCTTTG
CTTGAGCTCCTCTCCCCTTCTCTCCCCTCTCCCGGAAAATTCTGCCGAAT
TCGTGATGGTATTTTCTGTCTGGTTCGTCGGTGCATGCCCAAGTATTTTG
CTCGGATCGACGGCAACGGTACAATACTGCACGGAACAGTATGAGTGTCC
TTACTGGTGTCAGCGGCTTCGCTCGACGCCTTTCTCCTCTTGAGTGTCCC
CTCACCAAAATCTCGAGACTGCGGTCGTTCGCCGCCCTCCCCCACAACAC
GTGCTGTGATGTCGTTGCGTCTGGGGCGGCCATATAACAACAAAAACAAC
AAGGCGCGGCCACGTGGGAAGAGGCTTGCCTGGGACGCGTCAAGCCTTGC
TGCGGGAGCATGGACGGCCGACGACAACAGGACAGGCGAGCGTCGACGAG
GCTATTCCGTATTGTTGTTCTGTCTTTGTGTCTGTCTCCGGTCATGCAGA
CAAAGTTTCACGACCCGGGACGCAAGTCCTTTCCCCCTGCCTTCTCTTGC
TCTGTTGCCAGCAGCTGGTTGCCGTCGTATAATTGTGCGCTGATTTGGGC
GTAGGTCAGCACTTATCTATCCGTGTGGCGGGATTTATCTATCTGTGTGG
TGGCACCTCTCTGCCTTACCGCGTCAGATCAGCAACGCCCGTGTGATGTC
GCTACCCGCTCCTCGCGCTCTCGGCGACCGGCCATGGGATGACTCCGGCA
ACACAAACAACGATACGAAGGCCCCGTCGTGGCTCTTCCATATTACACCC
AAAGGCGTCACGGCACACGTTTTCCTTCGCGTGGTCTGCTGATTCGAGCC
GTCTCGTTTGACGTTACCGCTGCGCAGTTACGACGTCCGTGGGGGACTGG
GTAGGAGTTTACGGGAATCGCGTCATGAGGTGGGTTGAGGCGCGGTTTGG
GTGGAATGCGTCGTTACGTTTTGAGGGTTTGTTGATATTGGTGGTGGTGG
TGGTGGTGATGGTGGTGATGGTGCGTTGGTAGTTTTGTTGTCGATGTCAC
CGATCACGGTGTGTGCACGCCGTGCGTGTCGTCGTTTTGAGCGAAAAAGA
CGGCTGAATTCGTTTTGCGTTCGTTCGGCGAAATAAAAAAAAGGACAAAA
AATCCACCCGCCGTCTATGGAGCGCTGGGGGTCCTCCCAGAAGGTAGAAG
GATACAAGCGACACCTACAGCACCTCTTCTGGCGGTGTGGGATCGCATCA
TCGGCATCGCGGCCGGCCAACGCGCACCAAAGGGGCGTGATTGTGAAGCA
CGCAGCAAAGACTGCCAATTACCCGCAGATGTCTCGCTGTGGCAGGCCGC
GGAAACGCTGGGAGTGTTCATGCATGATCTCTGCATGCATGCACACCCTA
CCGGAAGATAGACGCGATGTTTGCGTGGGCGTGGCTCCTCAGGCTTTACA
GGGGAGGGTCAGCTCAGGCACACGTTTTGCGCTTCAACAACAAAAACACA
AACAGGTCTGGGTTTCATCGGTGGTCCGTCCGAGCGAACAAGATCGGCCG
AACCGAGAAGTGGAGCGCTTGGGCAGCCATCGTCGGAATCGCCCGACCGC
ATTCGCAGAACCCTTGTGAGTGTACTATCTCTATGTTCGTAGATACAGCA
GTACGTGTGCTTGCTGTTTTTTTGTTACGGATGTCTCATCAAGTCGTCGC
CGGACACTCAATTTAGAACAACGCCTTTTTCGTTTTCTTTGGGGGGTGGC
CCTACAGGTGTTTGCGTGTATTGCTGTGTATCTTGCCCAGTTTTGGCACG
TTGGAGAATTTCTACACCGTTTTCCTCAAGGGTTGTGACTGACAGGAACT
CGTTGATTTTGTGTTGCCTTTTGCGGACAGCAGCTCTTGATGCTGCCCTC
GAGGGAGGGAGGGAAATGAAAAAACTCGCTAACGTTTTCGATTTAATCAC
ACACAACACGCACGCCAAATCTCCCTTTTCTCACTCGCTCGCCCTCCAAT
ACCAGCCTGTTTGCATACTCTTCTCCCGCTGTAAGACTTCGCATATTTTC
ACTGTGCAGCCGATCGATGCTAGCGTCCCCCCCCCCCCCCCCCCCCCCAA
CAGCCCGACCGTACCTGCCCGTCACCGGCTTCATCGCCGGCACGGGCAGC
AGCAAGCTCGGCGGCAACACGGCCGTGGACGAGTACTCCTCGACCTCGAT
CGCCGACGGCGACGTGGTTACGGTGGTGTACGACGCGGACGGGGGCGTCG
TGACGTTCTTCGTCAACGGGACTAGCCTCGGGCAGGCCTACTCCGGTCTG
TCGGGCCCCAACGTGGCCGCGATCGCCGTCAACGCGGCGGGCGCCCAGTG
GGAGTGCGTCGACTGCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig852:4233..9751+

>mRNA_E_fasciculatus_S2_contig852.16654.1 ID=mRNA_E_fasciculatus_S2_contig852.16654.1|Name=mRNA_E_fasciculatus_S2_contig852.16654.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1740bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig852:4233..9751+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGGGAAAGGCGGGAGCAGGGGCTGTCGCTGCGATGTGGACCATTC
CATCGCGAGGCTGAATGGCTTGTTTGAGATGGTGGATGGTGATACGTGCG
ACGTAACGTTTGTCGTGACGTCCGCGGCGTCGGCTCCGTCCAGCTCTGAA
GGACTCATTCCACAGCCGGCGGGCACACCAGAGCGGGCAAGAACAAGGAC
TAAAACGCTAGAACAAGGCTCACACAGAGGCGACAGCTGCAGTGACAAGA
CTGTCTCGGGTACTGGAATCGCCGATAATGATACTGCTGGTAGTTGTGAA
AATAGGGAGAGGCAGCGGGGCGAGCGCCAAGAGTCCGGGGCCGGAGGAGG
AGGAGGGGGAGCAGCAGGGGCAGGAGAGCGGGAAACCGACAGGGAAGGAG
TGGAGAAGCTAGCCCAAGTAACACCGGACGCCGGCACAACAGCGGTGACT
ACCACCGGTTCTGTGCCAACCACGAAGTTGAACACCTGTTCTCCTGCTCA
CGATACCTCGGGCAACACCAGCAGCAGCCTGGGCACTACCAGTAGAGAGT
TCAGGTGCCACCGTGTCTTTTTCGCGTCGTGCTCGGCGTACTTCCGCGCT
CTGCTGTACGGTGGCATGAGCGAATCGGAGACAAGGAGGGTCGAGTTGAG
AGACGTCACGCCGGAAGGGTTCGAGGCCATCATGACATACGTCTACACCG
GAAAAGTTAGCGTGGATGCGGCCAACGTGATGGACATTTTTTCGCTGGCG
CACCGGTTCGGGATGGGCGAGCTCCTGAAGGCTTGCGCGGAGGTCTTGGA
CGAGTGCATGAACTGCGACGATGTTTGCCGGGTGCTGGAGGCGGCGGAGT
ACTACGGACACGACGAGCTTGCGGCCAAATGCTGGGATCTCATCAAGGAG
AACACGCCCAGGGTGTTGAAGAGCGAGAGCTTCTTGGAGCTCCCGTGGCT
GCAGGTGCTGAGCCTCGTGAGGGAGGGAGAGCTGCAGGTGGACGAGGCCG
AGCTCTTCAAGGCGGTGCAGGCCTGGGTGTCCAGAGATACCGCCGAGAGG
CGACGTCGCGTTGACGAGGCGAGTTGTCTGTCCCGCCATTTCCGCCTCCC
GCTCATGTCCCTGAAAGAGCTCATGTCGGTCGTCCGGCCGACAAACCTGA
TCGCGGCAGACGCGATCCTCGATGCCGTCACGTACCACGCCGACCCGACA
AGGTGGACGGGCGATTGCTTGATGGCGCGGCCACGTGGGAAGAGGCTTGC
CTGGGACGCGTCAAGCCTTGCTGCGGGAGCATGGACGGCCGACGACAACA
GGACAGGCGAGCTTACGACGTCCGTGGGGGACTGGGTAGGAGTTTACGGG
AATCGCGTCATGAGGTCTGGGTTTCATCGGTGGTCCGTCCGAGCGAACAA
GATCGGCCGAACCGAGAAGTGGAGCGCTTGGGCAGCCATCGTCGGAATCG
CCCGACCGCATTCGCAGAACCCTTCCCGACCGTACCTGCCCGTCACCGGC
TTCATCGCCGGCACGGGCAGCAGCAAGCTCGGCGGCAACACGGCCGTGGA
CGAGTACTCCTCGACCTCGATCGCCGACGGCGACGTGGTTACGGTGGTGT
ACGACGCGGACGGGGGCGTCGTGACGTTCTTCGTCAACGGGACTAGCCTC
GGGCAGGCCTACTCCGGTCTGTCGGGCCCCAACGTGGCCGCGATCGCCGT
CAACGCGGCGGGCGCCCAGTGGGAGTGCGTCGACTGCTAG
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