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Homology
BLAST of mRNA_E_fasciculatus_S2_contig8512.16647.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY54_9PHAE) HSP 1 Score: 122 bits (306), Expect = 9.970e-34 Identity = 77/110 (70.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 1 MQQLLRALAAASALLAA-SARALPGTXXXXXXXXXXXXXXSRKNAWTQRRQPKVDELDATPPVLP---SDVSRA-SGLSSCLGLRGGSTDKAKADAIDGPCIGIDLGTTY 315
MQQLLRALAAASAL A+ SARA PGT SRKNAWTQRR+PKV+ DA PP P S VSRA SGLSSCLGLRGG DK KADAIDGPCIGIDLGTTY
Sbjct: 1 MQQLLRALAAASALFASGSARASPGTAGAAAVGAGG----SRKNAWTQRREPKVELDDARPPPPPLPRSAVSRATSGLSSCLGLRGGGNDKGKADAIDGPCIGIDLGTTY 106
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 354 |
| Hectar predicted targeting category | chloroplast |
| Exons | 3 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_002130.1 |
| Cds size | 354 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842510.608261-CDS-E_fasciculatus_S2_contig8512:2757..2907 | 1696842510.608261-CDS-E_fasciculatus_S2_contig8512:2757..2907 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8512 2758..2907 + |
| 1696842510.6236718-CDS-E_fasciculatus_S2_contig8512:4453..4620 | 1696842510.6236718-CDS-E_fasciculatus_S2_contig8512:4453..4620 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8512 4454..4620 + |
| 1696842510.6372623-CDS-E_fasciculatus_S2_contig8512:4959..4996 | 1696842510.6372623-CDS-E_fasciculatus_S2_contig8512:4959..4996 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8512 4960..4996 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8512.16647.1 >prot_E_fasciculatus_S2_contig8512.16647.1 ID=prot_E_fasciculatus_S2_contig8512.16647.1|Name=mRNA_E_fasciculatus_S2_contig8512.16647.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
MQQLLRALAAASALLAASARALPGTAAAGAAAPRGGSSSSRKNAWTQRRQ
PKVDELDATPPVLPSDVSRASGLSSCLGLRGGSTDKAKADAIDGPCIGID
LGTTYSPRMQVVPEEGWY back to topmRNA from alignment at E_fasciculatus_S2_contig8512:2758..4996+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig8512.16647.1 ID=mRNA_E_fasciculatus_S2_contig8512.16647.1|Name=mRNA_E_fasciculatus_S2_contig8512.16647.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2239bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8512:2758..4996+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGCAGTTGCTCAGAGCGTTGGCCGCGGCCTCGGCCTTGCTCGCCGC
TTCCGCGCGTGCTTTGCCGGGGACAGCAGCGGCGGGCGCGGCAGCGCCTA
GGGGCGGCAGCAGCAGCAGCAGGAAGAATGCTTGGACGCAGAGGCGCCAG
GTATGTTGGTTGTTGTGTGTTGCATTTCAAAGCTCTCGCGACGACACGTG
TCTCATGCCCAACCCCACAGCAGCAACCACGAGCTTATTTGTTTGTCTGC
TGCCTAGGCTCCTCGCCCGCGAACAGCAGTGGTTGCTAAGCATCTTCTGT
GTCTGTTTGGGGGGGGGGGTCGTTGCATTTTGCAAAAGTCTGCTGTGTAT
GTAGTGTGACCGGTGCAGCAGCTGCAGCAGCAGCAGGTTCAAACGGTGGG
TATGGCGACTTGCACCGCCAGCGGCGGGGGGTTGCTTCCACCGTCTTTCA
TCTTTCCAACATGTGTCTGGCTGTTGCAGAGCGAGCAGCCTTACAACGCA
CACACACACACACACACCCTTTGGCAAATTGTCCTCGTTTGTTCAAGCGT
CGGTAGTACATCATCCGATTATGTATCGCCACCAGGTGTGGGAAGCTCTT
TCGTTGTTCATGAAGATATCGCCGGTGGGGGGTGGCACGTGTTGCTGCTG
CTGCAAGTTTCGCATGGTGTGATGTTGTGTGGGATCACCCTGCTGCACGC
TTGCCAGCCGTAAGCGGTTACGACGACGACCCTTCTCCTTTCGCGATGGG
ACGGACGGTGTATCAATCTGAATGCGCGCAGTTTTGGCCATCGTACGTCG
AAGCTTTGCTCTTGTTGTTCATGAAGATATCGCCGTTCGGCGTGTCTCCT
GCACGTGGTCTCGCCTTCGAGAACGTGCCTTTTCGAGAACTCCATGTTGT
GATGTTTGTGTGGGAACATAATGTACGATCTCCAAGCGGTAAGCGGTTAC
ATACAACGACGGCCTTTGGATGGGACGGACAGACTGCAGCATGCGCAGTA
CCTACATGACATGAGGTTCTCTTTCCGGGCCCATGCACGCCTCCTGCATC
TCGTACATGAAACGCCAACTACACACACAGCAGGTGCAGCACTTCATTGA
CGACATGAACATTGATCCCCAGAGACAACAACAATCAAAGCTCTACAGCA
GTAGCTGCAAGCAAACCAGCCGGTTAGGCACCCACTCACCTTCGTAAAGG
CTGTAACCCACCCCCTTTCGACTACTGCTGTGGTAATTTCTCGTACGGGT
AGTATTTATAATGTCCATATGTGCGTCTTCTATTGTATGGCATGAATATA
CCCCCAAACGACAGCAGCAACAACAGCAATCTTGCAGCCGGTTGAGCTGG
ACGCACCGCAGCCGCTGCTGCCTTCGGCCTTCAGCCGTCTCGTCATCGAG
AGCCGCCTTGCATCGTCCCATGCACTCTCTAAACGTGTACAGCTGTAGTA
CTCCATGAAACGCCACACCCTTCCTTGACATGAAGCCCAACAACAACAAC
AACAACCACAGCCGAAGGTTGACGAGCTGGACGCACCGCAGCCGCTGGTT
CGGCCGTTTCGTGATCGAGAGCCGCCTGGCATCGTCCCATGCACCCACTA
AACGTGTACAGTTCATGAAACGCCAAACACAAACGTGCATTTCATTGACA
TGAAGCCTATCCCCAACGACAACAACAACAACAACAACACTTGCAGCCGA
AGGTTGACGAGCTGGACGCAACACCACCGGTGCTGCCCTCGGACGTGTCG
CGGGCGAGCGGCCTGTCCTCGTGCTTGGGCCTGAGGGGGGGAAGCACCGA
CAAGGCGAAGGCGGACGCGATCGACGGCCCGTGCATCGGCATTGACTTGG
GCACCACGTACAGGTATGTAGGTGTCATCTACTGCCGTAATTTTTACTTT
CTCTCTCTCTCTACTTGTCCTTTCGCAAGAAATCCAAGTTGTTATCTCTG
GTGTTTGGGCACGTACAGGTACCGTATTTGCCGTGAATTTAACTTGCTCT
CTCTCTCTTTATTTTTTCGCAAGAAATTCAACTTGTTATCTCTCTTGTTT
TGGGCACGACGTACAGGTACGGTGCCATCTATTGCTGCTGTAAATGTTAC
TTGCTCTCCCGTTTATCTCTATTCCCTTCCGCAAGAAATCCAACTTGTTG
TCTCTGTTAGTTTGGAAACTATGAAATTGTGCATTGCAGCCATGATGCAT
AGCCCACGAATGCAAGTTGTGCCAGAGGAGGGGTGGTAC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig8512:2758..4996+ >mRNA_E_fasciculatus_S2_contig8512.16647.1 ID=mRNA_E_fasciculatus_S2_contig8512.16647.1|Name=mRNA_E_fasciculatus_S2_contig8512.16647.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8512:2758..4996+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGCAGTTGCTCAGAGCGTTGGCCGCGGCCTCGGCCTTGCTCGCCGC
TTCCGCGCGTGCTTTGCCGGGGACAGCAGCGGCGGGCGCGGCAGCGCCTA
GGGGCGGCAGCAGCAGCAGCAGGAAGAATGCTTGGACGCAGAGGCGCCAG
CCGAAGGTTGACGAGCTGGACGCAACACCACCGGTGCTGCCCTCGGACGT
GTCGCGGGCGAGCGGCCTGTCCTCGTGCTTGGGCCTGAGGGGGGGAAGCA
CCGACAAGGCGAAGGCGGACGCGATCGACGGCCCGTGCATCGGCATTGAC
TTGGGCACCACGTACAGCCCACGAATGCAAGTTGTGCCAGAGGAGGGGTG
GTAC back to top
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