mRNA_E_fasciculatus_S2_contig8509.16643.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8509.16643.1
Unique NamemRNA_E_fasciculatus_S2_contig8509.16643.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8509.16643.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW2_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 3.600e-58
Identity = 174/221 (78.73%), Postives = 178/221 (80.54%), Query Frame = 1 
Query:  265 MSEKEQPPMMDQKLCVAGCGFFGSSQTSQMCSKCWKDSLSKSMLGAEGKKESGAGAGSSPSSLPSLSKPSPMEXXXXXXXXXXXXXXXXXXXXXXXSVEASAXXXXXXXXXXAPPLTPPPAVXXXXXXXDTSNVEMTPVLPPQPPSAATPMAVAAPAPSPLSFSATGGAAAAPAIXXXXXXXXXXXXXXXXXXXMEAAAEGPPARPVQKNRKRCFTCHKKV 927
            MSEKEQPPMMDQKLCVAGCGFFGSSQTSQMCSKCWKDS+SKSMLGAEGKKE+GAGAGSS SSLPSLS+PSPME XXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXX          XXXXXXX+T  VEMTPVLPPQPPSAATPMAVAAPAPSPLSF   G    APAI         XXXXXXXXXX     E P ARPVQKNRKRCFTCHKKV
Sbjct:    1 MSEKEQPPMMDQKLCVAGCGFFGSSQTSQMCSKCWKDSMSKSMLGAEGKKENGAGAGSSSSSLPSLSEPSPMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPTVEMTPVLPPQPPSAATPMAVAAPAPSPLSFGVGG---TAPAIGGGAAAEGAXXXXXXXXXXXXXXXE-PAARPVQKNRKRCFTCHKKV 217
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8509.16643.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.600e-5878.73protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8509contigE_fasciculatus_S2_contig8509:1006..5388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score199.1
Seed ortholog evalue2.9e-48
Seed eggNOG ortholog2880.D8LNW2
Model size929
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG3173@1,KOG3173@2759
Cds size927
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842510.1635942-CDS-E_fasciculatus_S2_contig8509:1005..15081696842510.1635942-CDS-E_fasciculatus_S2_contig8509:1005..1508Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8509 1006..1508 -
1696842510.1742-CDS-E_fasciculatus_S2_contig8509:4323..44151696842510.1742-CDS-E_fasciculatus_S2_contig8509:4323..4415Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8509 4324..4415 -
1696842510.1842923-CDS-E_fasciculatus_S2_contig8509:5056..53881696842510.1842923-CDS-E_fasciculatus_S2_contig8509:5056..5388Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8509 5057..5388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8509.16643.1prot_E_fasciculatus_S2_contig8509.16643.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8509 1006..5388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8509.16643.1

>prot_E_fasciculatus_S2_contig8509.16643.1 ID=prot_E_fasciculatus_S2_contig8509.16643.1|Name=mRNA_E_fasciculatus_S2_contig8509.16643.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=309bp
SNTPRLVSYSNQPVTTTQSSTTRAPGPVRTCSTASLARRQHYHQHKGRER
KKGKLERSSLFNSHTPSGGGSTSGGDQEAAREEGPAATMSEKEQPPMMDQ
KLCVAGCGFFGSSQTSQMCSKCWKDSLSKSMLGAEGKKESGAGAGSSPSS
LPSLSKPSPMEESSPTPPDAAAPAEGGEGSGVAVSVEASAASSSTAAAVA
APPLTPPPAVAATAAAADTSNVEMTPVLPPQPPSAATPMAVAAPAPSPLS
FSATGGAAAAPAIGGGAAAEGAAGAAVATAAAMEAAAEGPPARPVQKNRK
RCFTCHKKV
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mRNA from alignment at E_fasciculatus_S2_contig8509:1006..5388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8509.16643.1 ID=mRNA_E_fasciculatus_S2_contig8509.16643.1|Name=mRNA_E_fasciculatus_S2_contig8509.16643.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4383bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8509:1006..5388- (Ectocarpus fasciculatus EfasUO2)
TCGAACACCCCTAGGCTCGTGTCTTATTCCAACCAACCGGTGACGACCAC
TCAATCCTCCACCACACGTGCCCCTGGGCCTGTTCGAACGTGCTCGACCG
CTTCTCTCGCCCGCCGCCAACACTACCATCAACACAAAGGGCGTGAGCGA
AAAAAAGGGAAGTTAGAGAGAAGCTCTTTATTCAACTCGCACACCCCATC
CGGCGGCGGCAGTACCAGCGGAGGTGACCAAGAGGCAGCTCGGGAAGAGG
GACCAGCGGCCACCATGTCAGAGAAGGAGCAGCCTCCGATGATGGACCAG
AAGCTGTGCGTCGCGGGCTGCGGCTTCTTCGGGTGAGTGCACGTGCTCGT
CGCGTCAATTCCCGGCCGCAGCGCGTGCGTGTGTTTTCTGGAGAAGCCCT
CAATGGGGGTCGGTGTGTTGTGTGTTCACCCTTTATATCGTTCCTTGCCG
CGGGGGGTGTAGGCACTGCTCGCCCCGCGCTGCGGCGGCGAATCGCCTAG
ATCTGTCGACAGACACCGGCGGCAGTATTGTTCCGTGCACGAAGGAAGGC
CCTCGCCGCGATGCCCTCGCCCCTCCGCCCCCCAGGCCAAACCTCTTTTT
TGCGAACAACGGTAAATTAGGGTGTTGTGTTTTCGTTGATGCCTGCCTCC
CGGAACGCCTGCTGCTCATCAGTTTCCGCGCTTCAACCCCACGCAGCAAG
CAGTTAGCCAAACTCTCGTTGCGGGGGAGCAGGGGGATAGATGTGCTGGG
CTGCTACATGGACCGCCGTGTAAGGGGTAGAATGGTGGATGGTATTTCGC
GATCCCTCCGTGTGGGCTGCTGCTGCTGCTGCCGTCCCTCTCTTCGCGTC
ATCTCTGGTGTCAGTCAAACAAGCTTTGGCAACTTTTTTTCGGCTCCCAA
AAAAAAAAATTAACCCCGTCATGGTCGCGATCGCTCCTTGTTGTTGCTGC
TGCCACGCGTTCTGTGCTTCCAGATCCTCGCAAACCTCGCAAATGTGCTC
AAAGTGCTGGAAGGATTCGTTGTCCAAGTCTATGCTAGGGGCGGAGGGAA
AGAAAGAGAGCGGTGGTGAGTGCATGCGGCGCGCCACGGGCGGGGGCGGA
AAATGGAAGAGAGAGAAGAACGAGGACGCGAAAATTCGTGCTCTCCTCCT
CCTTCCTGTAGGGTGTCGTGCTGGTAGGGTTTCGCCCAATAAAAATCACC
CGCGCGCGTGTGTATGGTCTGTTGGCGTGACTCTCTCGCGGCCCGGCGTT
TAGAGATCAGCGTAGGGACAAAGCGAACTGTTCCGCACCAACAAACCCGT
CGTGCCCACGTTTGGGACACAAAACCTGCAGCAGCAGCAGCACCAGCAGT
CAGTGTCCCTGTTTCAGCGGGGGTCCAAAACATTTTCCCGAAAAATGCGG
TTGTTGGGAGAGCGCCGGACAGCAGTAAAAGAGTTGAAGAAGGTTCTCTG
TTCGAGGTCTGTATGAGCTGCGAATATTGAGAGACGCATGTGGGAGCGTC
GCCGCGAACGTGCGTCAGCTCGTGGCCACGTGATGTTGCCGGCTCGTGTG
CGCACGGTTCTCCAGGCTATTCGCTTTCTTTCGTTCAATCCCTCCATTGT
GTACCCCCACTTCTAGCAAATTGTGTAGCTCCACCAACACTCGGATTAAA
AATAAAATTCGGAAGAGCGCGATCGGCTGCGTGGGCGGGTGCTCGCCCAC
ACACGGATGTACCGCCTAGACTCACTTTTCTGGCTAGTGTGTGGGTAATA
AGATGAAGTCACAGCTATTACCTGACGTAGTTGACGGCGGAACGTCGGTG
TGGTTGACCGCGAAGGCTTACATGCATGCGTGCTAAGCTGGTTGGGTCCA
TGGCCTCTTGATGGCCTCTTGACGAAACCTACCTACGTAGGCTTGAGCTT
CTCGGTCATCTATTGTAAAACCCCCTGCTGGCCTTAGAGCAGTATTATCG
TATTATCGGCTCCGTAATTGTTAGAGCTCGCCTGTTGGCCCATACGAAGC
CCAGCCATGCATGGTCCATGCGTGTTAAAATACTTGTCAGCAAAAGTATT
TTCCGCGTCGAGTACATTACACGCGGATGGGCAGCGGTGAGTTGTCTTGG
TGCCGTGCTTGGCCACCAGCTCTCGGGGTGCATGTGCACGCATCTGTAGC
TGTACCTCCCCCCCCTCCCCTCTGTATCTGGTTCTTGAAAGCAAGAGATT
TACGTACACGCGTACACGGCTGCCTAATCGCGAAACGGAATGAAGGCAGG
ACGGCAGGTTTCCCACCTTAGGCTGCTCGCTCTTGTCGTATGTGCAGCTT
ATCGAACGGGCAGTTTTGTTTGCGTACATGTGCATACAATAGGTGTGAGT
TGAACATTCCAACAGGAGCGACAAACAATTCCTGAACGACCACGGCGTTT
ACAGCGTGAAGTTCCACACACAACGCACATATTTTTCATACAACCGACGT
TACGGTACGGCGGATTCGAACGGGAGATCACCCAATCCAACGCGCACAGG
AGAGTGTGGCCGTTTTGTCTTTTTCTTAACAATTTTTCGCCTCATGAGCG
TCGATGAAATTCGACGCCGCTGTTGTTGTGATACAACTGTAAGTCACTTG
TATATTTCAAGCAGCATATGTCATCACATTGCTCTGGTTATTTCATCGGT
CGGCCGAACATTTACCTGCCTGTGGTCTGGTCAGAAACGAGGAGGGGGCA
CCCCTTGGGTAGCGCTAAAAAATAACTACGTGGAGCCCTCGGTCATAATA
TGTTGAGACGTGGCGTGTCTATCGTATGCATAGCACGTTGGCACTGACGT
CTTTTCATTGGTCAGCCGGTTAGCGCCGTCGGTGCTATTAATAGTGCTAC
AACACACGCGAGCGGACGCTGGGGCCTCACTCACCCTTTCATTTCCCAAT
CCCAAGAAGGATGTATCACGCGGGGCTTTGTGGAAAACAAAGTACTCCTG
CCGACGAGCAGCAAGGGTTGAGCCATTAGCGTCTGCGTCGTTCCACCCGA
TGAAGGGCACATGGTATTGGCCTTGATCTTTCTGCTTCGACCATCGCCAG
GGGCGGGGTAAGAATGTCGGCCCTGCTCCCGTGGTGTTGTATGTGGTATC
TGTGAGCCGGGTTCTTGAAGTCAAGCATAGGCGGCACCGCCGTGTGATGA
TCAACACAAGACCTGTGGGGTGCTGTTTGGCATCGATAGCGTCGGGCAGT
GTGCGGCGACGGAGGACAGCAAACTGTACGACCAGATGGGCTTGCCGCAC
CCGGTGTATGCACAGCTGCATTCCGCCGTCGCCGGATTACCACCTGACGC
TATCGATATCAAACGGCACCCCACACTCCTGTCTGGCAGCCGCGTTTGAA
ACTGGGATGAAACTGGGATCTATGCCCTCGTCATCCATTTGAGTGTCGTA
AGAAAGCACGACGACTTATCTCGATCCACAGATGAGAGATGAGCTATCCA
ATTAATTCATAAAGATGCATACCAACCCCTGCTTCTACCATTCCCTGAGC
AGATATAGTCTGCTGTTCGTAAAGAAAAATATCCCAGAGCATTAATCCCA
GTCCTCCACCTCTGGGAGGGACTCTACTACTGTATCTGATCGTCTGCCTT
CCTCCGCACGGTGATCAAGGAAGCGGCTGAATATGTTGATTTGGCTAACT
CAGAAGACGGGACGCCTATTGGCAAGGTCGATGTATAAACAAATGAAGAG
TTGTCGTTGCGTGCGTACCTCATGTACAGCACATGAAACGTTTTTTCGAT
AGGGTGCTAAGCGGGACCGTTTTTCATCTCCCTCTTTGTTTTTCGCGATT
CTGACCTGCGCGACGACCCACTCCGCTTGTTTTCTCCTTGGCATCCGTCG
AACCACCGCCCTTGTGTGTATGGGCAGCAGCAGGTGCAGGGTCCTCGCCC
TCCTCTTTGCCATCGTTGTCCAAGCCCTCCCCGATGGAGGAGAGCAGCCC
AACACCACCAGACGCAGCAGCACCAGCAGAAGGAGGGGAGGGGTCCGGAG
TAGCCGTCTCGGTGGAAGCGAGCGCCGCCAGCAGCAGCACCGCCGCCGCC
GTCGCCGCCCCACCCCTTACACCACCACCGGCTGTTGCCGCCACCGCCGC
GGCTGCGGATACCTCGAACGTGGAGATGACGCCGGTGCTCCCACCGCAAC
CGCCGTCTGCCGCCACGCCCATGGCCGTCGCGGCGCCTGCGCCGAGCCCC
CTGTCGTTCAGCGCAACGGGCGGGGCAGCAGCGGCGCCGGCTATCGGAGG
GGGAGCGGCGGCGGAAGGCGCCGCGGGGGCGGCGGTGGCGACGGCGGCGG
CGATGGAGGCGGCGGCGGAGGGGCCGCCCGCGCGCCCCGTACAAAAGAAC
CGGAAACGGTGCTTCACCTGCCACAAGAAGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8509:1006..5388-

>mRNA_E_fasciculatus_S2_contig8509.16643.1 ID=mRNA_E_fasciculatus_S2_contig8509.16643.1|Name=mRNA_E_fasciculatus_S2_contig8509.16643.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8509:1006..5388- (Ectocarpus fasciculatus EfasUO2)
TCGAACACCCCTAGGCTCGTGTCTTATTCCAACCAACCGGTGACGACCAC
TCAATCCTCCACCACACGTGCCCCTGGGCCTGTTCGAACGTGCTCGACCG
CTTCTCTCGCCCGCCGCCAACACTACCATCAACACAAAGGGCGTGAGCGA
AAAAAAGGGAAGTTAGAGAGAAGCTCTTTATTCAACTCGCACACCCCATC
CGGCGGCGGCAGTACCAGCGGAGGTGACCAAGAGGCAGCTCGGGAAGAGG
GACCAGCGGCCACCATGTCAGAGAAGGAGCAGCCTCCGATGATGGACCAG
AAGCTGTGCGTCGCGGGCTGCGGCTTCTTCGGATCCTCGCAAACCTCGCA
AATGTGCTCAAAGTGCTGGAAGGATTCGTTGTCCAAGTCTATGCTAGGGG
CGGAGGGAAAGAAAGAGAGCGGTGCAGGTGCAGGGTCCTCGCCCTCCTCT
TTGCCATCGTTGTCCAAGCCCTCCCCGATGGAGGAGAGCAGCCCAACACC
ACCAGACGCAGCAGCACCAGCAGAAGGAGGGGAGGGGTCCGGAGTAGCCG
TCTCGGTGGAAGCGAGCGCCGCCAGCAGCAGCACCGCCGCCGCCGTCGCC
GCCCCACCCCTTACACCACCACCGGCTGTTGCCGCCACCGCCGCGGCTGC
GGATACCTCGAACGTGGAGATGACGCCGGTGCTCCCACCGCAACCGCCGT
CTGCCGCCACGCCCATGGCCGTCGCGGCGCCTGCGCCGAGCCCCCTGTCG
TTCAGCGCAACGGGCGGGGCAGCAGCGGCGCCGGCTATCGGAGGGGGAGC
GGCGGCGGAAGGCGCCGCGGGGGCGGCGGTGGCGACGGCGGCGGCGATGG
AGGCGGCGGCGGAGGGGCCGCCCGCGCGCCCCGTACAAAAGAACCGGAAA
CGGTGCTTCACCTGCCACAAGAAGGTG
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