mRNA_E_fasciculatus_S2_contig8508.16640.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8508.16640.1
Unique NamemRNA_E_fasciculatus_S2_contig8508.16640.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8508.16640.1 vs.
Match: B30.2/SPRY (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGR5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.020e-29
Identity = 88/106 (83.02%), Postives = 94/106 (88.68%), Query Frame = -2 
Query:  902 ESEAQAECDRQTKEIDGLLRHETLLEGMHEMHTRHRRERKSLLATQRKEVQKFFQRRGGTXXXXXXXXXXXXXDACSSPATKRSRAGEGGNPPEASTAVGMEESEA 1219
            ES AQAE DRQTKEIDGLLRHETLLEGMHEMHTRHRRERK+LLATQRKEVQKFFQR    XXXXXXXXXXXX D  +SPA KRSR+G+GG+ PEASTAV M+ESEA
Sbjct:  323 ESVAQAEFDRQTKEIDGLLRHETLLEGMHEMHTRHRRERKALLATQRKEVQKFFQR--XXXXXXXXXXXXXXEDVSNSPAPKRSRSGDGGDLPEASTAVEMKESEA 426
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8508.16640.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B30.2/SPRY1.020e-2983.02domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8508contigE_fasciculatus_S2_contig8508:43..1409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1367
Hectar predicted targeting categoryother localisation
Exons1
Cds size705
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842510.0022113-UTR-E_fasciculatus_S2_contig8508:42..2051696842510.0022113-UTR-E_fasciculatus_S2_contig8508:42..205Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8508 43..205 +
1696842510.033726-UTR-E_fasciculatus_S2_contig8508:910..14091696842510.033726-UTR-E_fasciculatus_S2_contig8508:910..1409Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8508 911..1409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842510.0132186-CDS-E_fasciculatus_S2_contig8508:205..9101696842510.0132186-CDS-E_fasciculatus_S2_contig8508:205..910Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8508 206..910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8508.16640.1prot_E_fasciculatus_S2_contig8508.16640.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8508 206..910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8508.16640.1

>prot_E_fasciculatus_S2_contig8508.16640.1 ID=prot_E_fasciculatus_S2_contig8508.16640.1|Name=mRNA_E_fasciculatus_S2_contig8508.16640.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=235bp
MPYSRHRPNQKSRIGGWAQMPPALPRYTPSRSYAYLLGTIPSPKNDADTN
TSDRGLFQLMNTSPCCEYSTDKGILKKDRAEVTLAADRGGFAFQSYDTKH
TFSPTKLDSIKNFLTPNSPPYVGKLHQQSKGHVRLTWSTPPPRSPVLGTR
HAYPTPRQASPPKQRAPISFSILLTLLQQLFLALLRPSNPATKAPLVTNP
LKNRGGGDTPSYITETDHGGGSSSRKLLLRVIRS*
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mRNA from alignment at E_fasciculatus_S2_contig8508:43..1409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8508.16640.1 ID=mRNA_E_fasciculatus_S2_contig8508.16640.1|Name=mRNA_E_fasciculatus_S2_contig8508.16640.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1367bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8508:43..1409+ (Ectocarpus fasciculatus EfasUO2)
ATACCGTCTCCCCTCCCCCCCGTGCGTTGTTTCGTTTCCTAGTACTGGCA
TGCCGTCTCTGCTCAATGGCAACGAAAGTTACCGGTTCAAACACTCGTGT
GGCACCCTCGGGACCTATATTAGCATATGAAAAAAAAAAAAGTGTGACCC
TCTTAAGTCTTGGATGCCGTATTCGCGCCACCGGCCGAACCAAAAAAGTC
GGATCGGGGGATGGGCTCAGATGCCTCCTGCATTGCCGCGTTACACGCCC
TCTCGCTCGTACGCATATCTACTCGGCACCATACCCAGCCCCAAAAACGA
TGCGGATACCAATACTTCAGACCGTGGTTTGTTCCAACTAATGAACACGT
CACCATGTTGCGAGTATTCAACGGACAAAGGCATACTAAAAAAGGACAGG
GCAGAGGTAACGCTTGCTGCCGATCGCGGGGGTTTTGCATTCCAATCATA
CGATACAAAACACACATTTTCACCAACCAAACTCGACTCAATCAAAAACT
TCCTCACACCAAACTCACCGCCCTATGTTGGCAAACTGCACCAGCAAAGC
AAAGGCCATGTCAGGTTGACGTGGTCAACCCCCCCACCCCGATCGCCCGT
GCTGGGCACACGCCATGCCTACCCAACCCCACGTCAAGCCAGTCCGCCGA
AGCAAAGAGCTCCCATCTCGTTCTCCATACTGCTGACGCTGCTGCAACAG
CTCTTTCTCGCGCTCCTTCGTCCGTCGAACCCTGCCACCAAAGCACCCCT
TGTCACAAATCCCTTGAAAAATAGGGGGGGGGGGGACACGCCGTCGTACA
TAACGGAGACAGACCATGGCGGCGGTAGTTCATCACGAAAGCTCCTCCTG
CGGGTCATCAGGTCGTGATCAATCGTGGCTATCAAACCACGAGTGGCCTC
ATGCCTCGGATTCCTCCATCCCCACCGCGGTCGACGCCTCTGGGGGGTTT
CCACCCTCGCCTGCCCTGCTGCGCTTGGTCGCCGGAGAGCTGCAAGCGTC
TTCCGCGGCGGCAGCCGCGGCAGCCTCGGTTGCGGTTGCGGTTCCCCCTC
TTCGCTGGAAAAACTTCTGGACCTCCTTGCGCTGCGTGGCGAGGAGGGAC
TTGCGCTCCCGCCGGTGCCTCGTGTGCATCTCGTGCATGCCCTCCAGCAG
CGTCTCGTGTCTGAGGAGGCCGTCGATCTCCTTCGTCTGCCGGTCGCACT
CGGCCTGCGCCTCGGACTCGACGTTCATGCCGGCGGAGGAGGCGTTACTG
CTGCCCTTACCGCGGCCGCCGCCGCTACCTTGGGTGTGGCCGTTAGACCT
GCTGCTGCTGCTGCTGCTACCGCCGCCGCCGCCGCCACCACCAGTGGCAC
CTGCCGCCTTCTTGTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8508:43..1409+

>mRNA_E_fasciculatus_S2_contig8508.16640.1 ID=mRNA_E_fasciculatus_S2_contig8508.16640.1|Name=mRNA_E_fasciculatus_S2_contig8508.16640.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=705bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8508:43..1409+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGTATTCGCGCCACCGGCCGAACCAAAAAAGTCGGATCGGGGGATG
GGCTCAGATGCCTCCTGCATTGCCGCGTTACACGCCCTCTCGCTCGTACG
CATATCTACTCGGCACCATACCCAGCCCCAAAAACGATGCGGATACCAAT
ACTTCAGACCGTGGTTTGTTCCAACTAATGAACACGTCACCATGTTGCGA
GTATTCAACGGACAAAGGCATACTAAAAAAGGACAGGGCAGAGGTAACGC
TTGCTGCCGATCGCGGGGGTTTTGCATTCCAATCATACGATACAAAACAC
ACATTTTCACCAACCAAACTCGACTCAATCAAAAACTTCCTCACACCAAA
CTCACCGCCCTATGTTGGCAAACTGCACCAGCAAAGCAAAGGCCATGTCA
GGTTGACGTGGTCAACCCCCCCACCCCGATCGCCCGTGCTGGGCACACGC
CATGCCTACCCAACCCCACGTCAAGCCAGTCCGCCGAAGCAAAGAGCTCC
CATCTCGTTCTCCATACTGCTGACGCTGCTGCAACAGCTCTTTCTCGCGC
TCCTTCGTCCGTCGAACCCTGCCACCAAAGCACCCCTTGTCACAAATCCC
TTGAAAAATAGGGGGGGGGGGGACACGCCGTCGTACATAACGGAGACAGA
CCATGGCGGCGGTAGTTCATCACGAAAGCTCCTCCTGCGGGTCATCAGGT
CGTGA
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