mRNA_E_fasciculatus_S2_contig8506.16639.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8506.16639.1
Unique NamemRNA_E_fasciculatus_S2_contig8506.16639.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8506.16639.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY1_ECTSI)

HSP 1 Score: 408 bits (1048), Expect = 3.020e-139
Identity = 269/336 (80.06%), Postives = 286/336 (85.12%), Query Frame = 1 
Query:  103 IMPTSGRFNHPDGSLPPPERRRRLDEYGSVEDLYSYSR-GGTGGGGAGAVGGIPVHAQRSRGDIFQELMSRRAHDMITGAQDVVAGAGMIREETQRQNRALRGENDTLRVCVDMLLSEAGXXXXXXXXXXXXXX--SGVSPFESSPMQLLSAARGVRDRNHQRELALSAAAASAQSALRAERSRREGAEVEARRPGAPASXXXXXXXXXXXXXXXQVVVGRGYWGESFSMALRAFRRENGNFMNAVEDRKRAERALEEERADRLRAEAAARTXXXXXXXXXXXXXXXXXXXXXXXXXXSRTLLPCGHLVLCDRCPVVSTCPICDQQVRRTMPSTLS 1101
            +MPTSGRF+HPDG+LPPPERRRRLDEYGSVE+LYSYS    T  GG GA G +PVHAQRS GDIFQEL+SRRAHDMI+GAQDVVAGAGMIREETQRQNRALRGENDTLR CVDMLL+EAGXXXXXXXXXXXXXX  SGVSPF+SSPMQLLSAARGVRDRNHQRELALSAAAA+A+SALRAER+RREGAEVEAR     AS               Q VVGRGY GE+FSMALRA +RE   FM+AVEDRKRAERAL EERADR +AE AARTXXXXXXXXXXXXXXXXXXXX      SR LLPCGHLV+CDRCPVVSTCPICDQQVRRTMP TLS
Sbjct:    1 MMPTSGRFSHPDGNLPPPERRRRLDEYGSVEELYSYSSTSSTSAGGRGAAG-LPVHAQRSHGDIFQELISRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQSSPMQLLSAARGVRDRNHQRELALSAAAATAESALRAERNRREGAEVEARLSREAASSSRQARGRRQNQQ--QQVVGRGYLGETFSMALRALKREKAYFMDAVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXXXXXCSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS 333
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8506.16639.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
RING-type3.020e-13980.06domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8506contigE_fasciculatus_S2_contig8506:3170..6466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1104
Hectar predicted targeting categoryother localisation
Exons2
Cds size999
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842509.948352-CDS-E_fasciculatus_S2_contig8506:3169..41681696842509.948352-CDS-E_fasciculatus_S2_contig8506:3169..4168Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8506 3170..4168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842509.960049-UTR-E_fasciculatus_S2_contig8506:4168..41861696842509.960049-UTR-E_fasciculatus_S2_contig8506:4168..4186Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8506 4169..4186 -
1696842509.97122-UTR-E_fasciculatus_S2_contig8506:6379..64661696842509.97122-UTR-E_fasciculatus_S2_contig8506:6379..6466Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8506 6380..6466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8506.16639.1prot_E_fasciculatus_S2_contig8506.16639.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8506 3170..4168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8506.16639.1

>prot_E_fasciculatus_S2_contig8506.16639.1 ID=prot_E_fasciculatus_S2_contig8506.16639.1|Name=mRNA_E_fasciculatus_S2_contig8506.16639.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=333bp
MPTSGRFNHPDGSLPPPERRRRLDEYGSVEDLYSYSRGGTGGGGAGAVGG
IPVHAQRSRGDIFQELMSRRAHDMITGAQDVVAGAGMIREETQRQNRALR
GENDTLRVCVDMLLSEAGGSAGGGGGGSSSSSSGVSPFESSPMQLLSAAR
GVRDRNHQRELALSAAAASAQSALRAERSRREGAEVEARRPGAPASSSSS
EARGRRQNQQQQVVVGRGYWGESFSMALRAFRRENGNFMNAVEDRKRAER
ALEEERADRLRAEAAARTALEDERARREQAENLAKCVLCSSRRRSRTLLP
CGHLVLCDRCPVVSTCPICDQQVRRTMPSTLS*
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mRNA from alignment at E_fasciculatus_S2_contig8506:3170..6466-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8506.16639.1 ID=mRNA_E_fasciculatus_S2_contig8506.16639.1|Name=mRNA_E_fasciculatus_S2_contig8506.16639.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8506:3170..6466- (Ectocarpus fasciculatus EfasUO2)
CTGAACCCAGATGCTCACACACTTGCCTCGAGCAACCACTGCGCGAAACC
AACACAAACGACCTCAGCAGACCGCAGCAATTAAAAAGTGAGTGCGTGCT
CGGTATCGCAGGGGAGAGAGGGAGGAGGAAGTGAATGCTAGGGCGTGCGG
GGGCGTGGTAGGGTCGTCGTCTAGGCGGTAGGAGGTAGAGTAGGAACGCG
GGAATCGCTGGCTAATTTGGGCAGGAAGGACCTAATTTGCATTTCTGCCG
AGAGCCGAGAGATGGCTTTGTAATTATAGTGGATTTGTCCTTAACCCCTT
GCAAGATTGCAAACTATGAGGATCAAGAGAGAAAGACCCTCCGACTAGTG
GGCGACTGCCTACTTCCCGGAGTCTCGAGCACAGCGAGATGAGAGGGGGG
AGAGAGAAGTTTGAAGGCACAGACAGGTCGTGAAACCACCGCGCACAACA
ACGAAAGGCCAGCATCTTTCAATTTTTTCGTGTCCTGTCCCTTCTGTTTG
CATGATGTGCGTTGTTGTTGTAGCAGCAGCAGCAGCAGCAGCACATGCAT
AGGCACGCCGGCAGCGGCACACAGCTGCGGCAATTGCGTACGGTCATGAC
CGGAGTCACTTTTCAACTGTACATACGATACACATATGCATAAATACGCA
TGCTTTGTTGTGTGCCCAATGGCCCTCTCTTCATCCTGCTGCTTCGTTTG
TGTGTGCAGCCGGTCCCTCCGGCCTGTGGCAAGCCCCAAAGATTCAGATC
TTTTATGTGTCGACGCAGCACAAACAATTGCGCGAAAGTCACGTTATCCT
GCAATCGTAAACACGATTGGGAGATGAGCAAGCAGCACACTGTGGTACAT
GCGAAGCAGAGATGCAGCTATGTACACTGCAGGCCCCTTATCCATGACCA
CTCGACCGCCCAAACGAGCTTGACTGCAGCAGTAGACTATATTGGACAAC
CATCACAGAGAGCCCTGGTAGAAACGTAGAACAGGCTCGCCGGTTTCTCC
GAATCTCTCTGCCCGCCTCCTGTGGCGCGCACATTGCGAACAGTATTACA
GCAGTAATCGTCCACGGAGAGGGAGAGAGATGGAGAAGGATACAGCAGGG
ATAATGCCGCAATACGAAGACGTGCCCTTGGAGAGCGTTTGAACTGTCTA
CTTGGAGAGTGCTGTATGTTTGGGCCGTCTACAAAGATTCGGGGGGATAT
CTATCTCCCCAATTTCAAGCACCTTTGCGGGCGAAATATCCGTGCGGGGG
CGGGGGATTGTTTTCCTTGCCACACACCCACCCACGCCCGCACCCAGACT
TGGGACTTGGCGGACATCACAATGTGCGGGGATAAACAGCATACAGATAT
TGTAGATAACGCGTTCCGTTTTGTACCAAAAATCATACCATGGTACAACG
TATTACATATTGAAAGTATGGAGTCGGTGTATGTCGGGGGCTTACGGGTA
GGGCTGGGTGTCGTCTGCCTCTCTGATAATAAGTAGTCGAGTCCTCCCCG
CGGCAGAGATGGCTTGGGTGAGTCCACTCGAGGGTTTCTTCTCTTGCGTC
GTTACAGTAAATAGCAGCGGCCCAAGGACGTACCCTGCCTACAATTTCCG
CCAGGCTCGTACAGCAGTAAAAGCACTAGCACGAGATCTGGACCTACTGC
TGTGTTTCCTCTTGGTTGCATTCTGTGGTTGAAATTGACGAAAATAAAAG
GAATGCGTGTGCGGACCTGTGTGGGAGCAAGCACTCAGGCTTTCAAGAAC
CCCGCCTCTCCCTCCCACCGCCGTATTTTGTTACGTCGCAGCACCGGGGG
GGGTGGGGTAAGCCTAGGCGTGGTGGCGCACCCCCCCCCCCCCCCCTTTT
TTTCCCTATTTATTTCTCCAGCAGGGGAGGGGCGGACCACCGCAAACGGG
CTGCTCGCGAAAAATTAAAGTTCTTCGTGAATAGTCTCACGAATAGGCTG
AAAATACCATCAGTATCCAGCAGGTGGCCCTACCCCTCACTGCTGTATAC
ATTTGAATCAACGCGTCCCTTCTTCCAACAGGGCATCGTCCCGAACGTGT
CGTCTGTCTTCAAGTTGAGATTAGTCATCCCATTCCGTGCCAGCAACAGA
AGACAGACCCGGTTCGATCCCCGGAAGCAAGCGCGTGAAACATCGGCTCC
GTTTTGTGGCAGCTGTCCGCCTCAGCCTGTACATCTGCCTCGACGCTATA
ATAGTTGTACTGCTTTGGGGTCCGATGTCATTAATTCTCACATCTCGTCG
TCGTCTTCTTTTTTTTTTTTGCTTTTCAAGGCACCAACCAGTCGAATTAT
GCCGACGTCGGGCCGCTTCAACCACCCGGACGGGAGCCTGCCGCCCCCCG
AGCGGAGGCGCAGGCTGGACGAGTACGGCTCGGTCGAGGACCTCTACTCC
TACAGCAGAGGCGGCACCGGCGGCGGCGGCGCCGGTGCAGTCGGCGGGAT
CCCCGTCCACGCCCAGAGGTCTCGCGGCGACATCTTCCAGGAGCTCATGA
GCAGGCGCGCGCACGACATGATCACGGGCGCGCAGGACGTAGTCGCCGGG
GCGGGGATGATCCGCGAGGAGACCCAGCGGCAAAACCGGGCTCTGCGGGG
AGAGAACGACACCCTGCGTGTCTGCGTGGACATGCTGCTCTCCGAAGCGG
GGGGGTCGGCCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCGGC
GTCTCCCCTTTCGAGTCCTCGCCCATGCAGCTGCTGAGCGCGGCCCGGGG
CGTGCGCGACAGGAACCACCAGCGGGAGCTGGCCCTGAGCGCCGCCGCGG
CGTCGGCGCAGAGCGCCCTGCGGGCGGAGAGGAGCAGGCGCGAGGGCGCC
GAGGTAGAGGCCCGGCGTCCCGGGGCCCCCGCTTCTTCTTCTTCGAGCGA
GGCGAGGGGGAGGCGCCAGAACCAGCAGCAGCAGGTCGTTGTCGGGCGGG
GCTACTGGGGGGAAAGCTTCAGCATGGCGCTGCGCGCTTTCAGGAGGGAG
AATGGCAACTTCATGAACGCCGTCGAGGACCGTAAGCGCGCGGAGCGCGC
CCTCGAGGAGGAGAGGGCCGACCGCCTGCGGGCCGAGGCGGCCGCGAGGA
CCGCGCTCGAGGACGAGCGGGCCAGGCGGGAGCAGGCCGAGAACCTCGCG
AAGTGCGTCCTCTGCTCGAGCCGCCGCCGCAGCCGGACGCTGCTGCCCTG
CGGGCACCTGGTTCTGTGCGACCGGTGCCCCGTCGTCTCCACGTGCCCGA
TCTGCGACCAGCAGGTCCGCCGGACGATGCCCTCCACTCTTTCTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8506:3170..6466-

>mRNA_E_fasciculatus_S2_contig8506.16639.1 ID=mRNA_E_fasciculatus_S2_contig8506.16639.1|Name=mRNA_E_fasciculatus_S2_contig8506.16639.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=999bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8506:3170..6466- (Ectocarpus fasciculatus EfasUO2)
ATGCCGACGTCGGGCCGCTTCAACCACCCGGACGGGAGCCTGCCGCCCCC
CGAGCGGAGGCGCAGGCTGGACGAGTACGGCTCGGTCGAGGACCTCTACT
CCTACAGCAGAGGCGGCACCGGCGGCGGCGGCGCCGGTGCAGTCGGCGGG
ATCCCCGTCCACGCCCAGAGGTCTCGCGGCGACATCTTCCAGGAGCTCAT
GAGCAGGCGCGCGCACGACATGATCACGGGCGCGCAGGACGTAGTCGCCG
GGGCGGGGATGATCCGCGAGGAGACCCAGCGGCAAAACCGGGCTCTGCGG
GGAGAGAACGACACCCTGCGTGTCTGCGTGGACATGCTGCTCTCCGAAGC
GGGGGGGTCGGCCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCG
GCGTCTCCCCTTTCGAGTCCTCGCCCATGCAGCTGCTGAGCGCGGCCCGG
GGCGTGCGCGACAGGAACCACCAGCGGGAGCTGGCCCTGAGCGCCGCCGC
GGCGTCGGCGCAGAGCGCCCTGCGGGCGGAGAGGAGCAGGCGCGAGGGCG
CCGAGGTAGAGGCCCGGCGTCCCGGGGCCCCCGCTTCTTCTTCTTCGAGC
GAGGCGAGGGGGAGGCGCCAGAACCAGCAGCAGCAGGTCGTTGTCGGGCG
GGGCTACTGGGGGGAAAGCTTCAGCATGGCGCTGCGCGCTTTCAGGAGGG
AGAATGGCAACTTCATGAACGCCGTCGAGGACCGTAAGCGCGCGGAGCGC
GCCCTCGAGGAGGAGAGGGCCGACCGCCTGCGGGCCGAGGCGGCCGCGAG
GACCGCGCTCGAGGACGAGCGGGCCAGGCGGGAGCAGGCCGAGAACCTCG
CGAAGTGCGTCCTCTGCTCGAGCCGCCGCCGCAGCCGGACGCTGCTGCCC
TGCGGGCACCTGGTTCTGTGCGACCGGTGCCCCGTCGTCTCCACGTGCCC
GATCTGCGACCAGCAGGTCCGCCGGACGATGCCCTCCACTCTTTCTTGA
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