mRNA_E_fasciculatus_S2_contig85.16630.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig85.16630.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB6_ECTSI) HSP 1 Score: 2081 bits (5391), Expect = 0.000e+0 Identity = 1330/1516 (87.73%), Postives = 1371/1516 (90.44%), Query Frame = 1
Query: 1 SHVSVALCNVAAATQCETQLLSPRNDGSVATPEPASTQDKAAVNEGGGAGHGKDTNDHASQRQSDGGSSTQSLKVREPDNNNNHVVTHEGSEAAASATVDSNEGSVATGDGDRFWLTNTDILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVTGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXXXXXXXXXXXXXXXXXSVRAVGNXXXXXXXXXXXXXXXXXXDATEASVS----SGAALLDDGGVTAVSGDGSESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRKSSSSTGERVASARLEAVEAVSVGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHXXXXXXXXXXXXXXXXXXXX----MGLMESDGLESADSDERGLDDXXXXXXXXXXXXXXXXXNTSSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSGSGCGEPRPLLYGGGDEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNASATPAAAASTQSHPWRIGEGGGSGGQVGGGVATSASIGENQPQGVDSNASPKGAGKDKKDSAAVVSERGTASTDNLADSLSMPPPTGTADHEENQRSPSSPGRAHDSKRSSLEATTAPAPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTASHKTRQQSVGDDWYMEGAGRPHNPAYRHGNNKXXXXXXXXEDAWSRTAREITRLWVRAVGWLCSPSHSKVWPHMIEVGILGAINTCVSSSTLSGDEEGLAICSAALRNLSTATSARSLGGERAAACFGTAKRLLSCCSGQPEVQVNCAAAMVNFVDATHVQDLQTLDVVGLLGEHCSWEDHGDNTPSATIVGELAIYSLSKLCTRDFVPKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNPPLPPRGPWDFLHPNDALGLTALPVLTKGAHKKSGEMMDQGPLSVQRSPENTHDTMSGQNQGLQRGDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLERETMASLPEADLPTGSSKSAIESAAXXXXXXGTAGDGHSRKGRGDGRTLKNTAVRLASMISETSMAARAFSSKPSRAAKLETRILRNPVLATEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASGTKEATAAAEGAQGTVLDEEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXXASSGGFGSVGMSRPSYGSGKPIGSTVAGTPQQLAGLTHKVPQRRAG 4524
S+VSVALCNVAAATQCETQL SPRNDG ATPE ASTQDKAAVNEGGG GHGKDTNDH SQRQSDGGSS QSL+ REPDNN H+V+HEGS AA S T+D+NEGSVA GDGDRFWLTNT+ILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLV GDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFH ALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXX S+R VGNXXXXXXXX AT+ASVS SGAALLDDGGV AVSG +ESA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +TR+SSSSTGERVASARLEAVEAVS+GRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAH XXXXXXXXXXXXXXX MGL +SDGLESADSDERG D+ XXXXXXXXXXXX SRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGS SGCGEPRPLLYGGG+EAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNAS+TPAAAASTQSHPWRIGEGGGSGG+VGGG+A SAS+GE QPQG+DSN SPK AGKD KDSAAV+SERG AS DNLADSLSM PPTGTADHEEN+RSPSSP R HDS RSSLEAT APAPTE XXXXXXXXXXXXXXXXXXXXXXXX QTTAS KT QQSVGDDWY EGAGRPHNPAYRHGN+K EDAWSRTAREITRLWVRAVGWLCSPSHS +WPHMI+VGILGAINTCVSSSTLSGDEEGLAICS LRNLSTATSARSLGGERAAACFGTAKRLLSCCS QP+VQVNCAAAMVN VDATHVQDLQTLDVVGLLGE+CSWEDHGDNTPSAT VGELAIYSLSKLCTRDF+PKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNP LPPRGPW+FLHPNDALGLTALPVLTKGAHKKSGE +DQG LSVQRSPENTHDTM+GQ+QGLQ GDTSATM STSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LERE MASL ADLP GSSKSAIESAA G GDG++RKGRGDGRTLKNTA RLA++ISETSMAARAF+SKPSRAAKLETRILRNPVL+TEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASG KEATAAAE A+GTVL+EEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXX GFGSVGMSRPSY S KPIGSTVAGTPQQLAGLTHKVPQRRAG
Sbjct: 853 SYVSVALCNVAAATQCETQLPSPRNDGGAATPELASTQDKAAVNEGGGGGHGKDTNDHGSQRQSDGGSSAQSLRSREPDNN--HMVSHEGSGAAVSETIDNNEGSVAAGDGDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVAGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHPALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXDSNAAA----------SIRGVGNXXXXXXXXV---------SATDASVSGTQSSGAALLDDGGVGAVSGGETESAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTADAVGQGATRRSSSSTGERVASARLEAVEAVSMGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTXXXXXXXXXXXXXXXXXXXMGLADSDGLESADSDERGFDEDGSGMXXXXXXXXXXXXX--SRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSTSGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNASSTPAAAASTQSHPWRIGEGGGSGGEVGGGLAASASVGEKQPQGMDSNTSPKAAGKDSKDSAAVMSERGLASNDNLADSLSMSPPTGTADHEENRRSPSSPERPHDSTRSSLEATAAPAPTEEXXXXXXXXXXXXXXXXXXXXXXXXTQ---QTTASQKTLQQSVGDDWYTEGAGRPHNPAYRHGNSKQGSEGGAGEDAWSRTAREITRLWVRAVGWLCSPSHSNLWPHMIDVGILGAINTCVSSSTLSGDEEGLAICSTVLRNLSTATSARSLGGERAAACFGTAKRLLSCCSDQPQVQVNCAAAMVNLVDATHVQDLQTLDVVGLLGENCSWEDHGDNTPSATTVGELAIYSLSKLCTRDFLPKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNPELPPRGPWNFLHPNDALGLTALPVLTKGAHKKSGEAVDQGQLSVQRSPENTHDTMNGQHQGLQLGDTSATMTSTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEREAMASLAAADLPNGSSKSAIESAAAGVAATGAGGDGNNRKGRGDGRTLKNTAARLATVISETSMAARAFTSKPSRAAKLETRILRNPVLSTEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASGIKEATAAAERARGTVLEEEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXXXXXXGFGSVGMSRPSYASSKPIGSTVAGTPQQLAGLTHKVPQRRAG 2342
BLAST of mRNA_E_fasciculatus_S2_contig85.16630.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX20_9PHAE) HSP 1 Score: 1603 bits (4152), Expect = 0.000e+0 Identity = 1040/1520 (68.42%), Postives = 1086/1520 (71.45%), Query Frame = 1
Query: 253 VVTHEGSEAAASATVDSNEGSVATGDGDRFWLTNTDILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVTGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXXXXXXXXXXXXXXXXXSVRAVGNXXXXXXXXXXXXXXXXXXDATEASVS---SGAALLDDGGVTAVSGDGSESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRKSSSSTGERVASARLEAVEAVSVGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHXXXXXXXXXXXXXXXXXXXX----MGLMESDGLESADSDERGLDDXXXXXXXXXXXXXXXXXNTSSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSG---------------------------------------------------------------------------------SGCGEPRPLLYGGGDEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNASATPAAAASTQSHPWRIGEGGGSGGQVGGGVATSASIGENQPQGVDSNASPKGAGKDKKDSAAVVSERGTASTDNLADSLSMPPPTGTADHEENQRSPSSPGRAHDSKRSSLEATTAPAPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTASHKTRQQSVGDDWYMEGAGRPHNPAYRHGNNKXXXXXXXXEDAWSRTAREITRLWVRAVGWLCSPSHSKVWPHMIEVGILGAINTCVSSSTLSGDEEGLAICSAALRNLSTATSARSLGGERAAACFGTAKRLLSCCSGQPEVQVNCAAAMVNFVDATHVQDLQTLDVVGLLGEHCSWEDHGDNTPSATIVGELAIYSLSKLCTRDFVPKGDRVIATITTMMDFDPQTIK--------RLDDSVRSLVNPPLPPRGPWDFLHPNDALGLTALPVLTKGAHKKSGEMMDQGPLSVQRSPENTHDTMSGQNQGLQRGDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLERETMASLPEADLPTGSSKSAIESAAXXXXXXGTAGDGHSRKGRGDGRTLKNTAVRLASMISETSMAARAFSSKPSRAAKLETRILRNPVLATEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASGTKEATAAAEGAQGTVLDEEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXXASSGGFGSVGMSRPSYGSGKPIGSTVAGTPQQLAGLTHKVPQRRAG 4524
+V+HEGS AA S T+DSN GS A GDGDRFWLTNT+ILRDTIAGCLASATADVKSNLIKAMNNLMVS+ERRA LV GDE+PALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSS XXXXX S+R VGN AT+ASVS SGAALLDDGGV VSG +ESA XXXXXXX STR+SSS TGERVASAR EAVEAVS+GRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLT IMHEDPNE +LTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAH XXXXXXXXXXXX +GL +SDGLESADSDERGLD+ GRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSN GCGEPRPLLYGGG+EAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYN NAS+TPAAAAST SHPWRIGEGGGSGG+VGGGVA SAS+GE QP+G+DSN SPK +GKD K+SAAV+SER ASTDNLADSL+M PPTGTADHEENQRS SSPGRAH S+RSSLEAT APAP+EXXXXXXXXXXXXXXXXXXXXXXXXXXXX QT ASHK QQSVGDDWY EGAGRPHNPAYRHGNNK XXXXX ED WSRTAREITR WVRAVGWLCSPSHS +WPHMIEVGILGAINTC SSSTLSGDEEGL I SAALRNLSTATSARSLGGERAAACFGTAKRLLS CS QP+VQVNCAAAMVN VDATHVQDLQTLDVVGLLGE+CSWEDHGDNTPSAT+VGEL IYSLSKLCTRDF+PKGDRVIATITTMMDFDPQ R D + SL+N SGE++DQG LSVQRSPEN HD M+GQ+QGLQ GDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LERE MASLP ADL SSKSA ESAA G GDG++RKGRGD RTLK+TA RLA++ISETSMAARAFSSKPS+AAKLETRILRNPVL+TEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTT QGVRGDGASG KE TAAAE A VLDE GAFEVLTVPDDKWISPDLPPEAGKQ AS GGF SVGMSRP Y SGKPIGSTVAGTPQQLAGLTHK+PQRRAG
Sbjct: 1 MVSHEGSGAAVSETIDSNGGSEAAGDGDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSEERRAKLVAGDELPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSXXXXXXXXXXXXXXXXXDSNAAA----------SIRGVGNGSGGA-------------SATDASVSGTQSGAALLDDGGVRPVSGGETESAQDGSSGDVGPATSGAGGVGSGPEASTXXXXXXXHTADAVGEGSTRRSSSGTGERVASARSEAVEAVSIGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTFIMHEDPNERG-----------------------------------------ELTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTLGGXXXXXXXXXXXXXXXGLGLADSDGLESADSDERGLDE-------------------DGGGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKCEGEPPXPNPPLPEGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNCNASSTPAAAASTHSHPWRIGEGGGSGGEVGGGVAASASVGEKQPRGMDSNTSPKASGKDSKESAAVMSERALASTDNLADSLAMFPPTGTADHEENQRSTSSPGRAHGSRRSSLEATAAPAPSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-QTKASHKAWQQSVGDDWYTEGAGRPHNPAYRHGNNKQGXXXXXSEDVWSRTAREITRAWVRAVGWLCSPSHSNLWPHMIEVGILGAINTCASSSTLSGDEEGLVILSAALRNLSTATSARSLGGERAAACFGTAKRLLSYCSNQPQVQVNCAAAMVNLVDATHVQDLQTLDVVGLLGENCSWEDHGDNTPSATMVGELVIYSLSKLCTRDFLPKGDRVIATITTMMDFDPQGYGAGGVNGSGRKDRILVSLLN---------------------------------SGEVVDQGQLSVQRSPENAHDAMNGQHQGLQLGDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEREAMASLPAADLSNVSSKSANESAAAGVAPKGAGGDGNNRKGRGDDRTLKHTAARLATVISETSMAARAFSSKPSKAAKLETRILRNPVLSTEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTSSKHAEGKSNNGGGKGGQRQDADPHTTAGAEQLQHQQQGVRGDGASGIKEVTAAAERA---VLDEGGAFEVLTVPDDKWISPDLPPEAGKQQQKDNYHAAAGRGGTLGGASGGGFSSVGMSRPPYASGKPIGSTVAGTPQQLAGLTHKMPQRRAG 1400
BLAST of mRNA_E_fasciculatus_S2_contig85.16630.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.720e-14 Identity = 85/208 (40.87%), Postives = 110/208 (52.88%), Query Frame = 1
Query: 1279 ADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKL--TNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHXXXXXXXXXXXXXXXXXXXXMGLMESDGLESADSDERGLDDXXXXXXXXXXXXXXXXXNTSSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLC 1896
+DL W A VL LS YR LIV HG+G IF +K T+DPL G +++ +R ++ L M + N+SC+ L+EELEGQ+ +LREFLSEY+ A XXXXXXXXXXXXXXXXXXXX D R RH LCA++++NL S RERL+++P+ L LLC
Sbjct: 605 SDLDTMWLAAVLGLSRSAAYRPLIVRHGEGIIFGRIKALSTHDPLLGGGDTLNVTLERRHRELSMAILSNLSCDGELHEELEGQLPLLREFLSEYDAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQLPDP-------------------RGDPRHLLCAQVIANLLRSAPFRERLARRPVGSALTELLC 793 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig85.16630.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig85.16630.1 >prot_E_fasciculatus_S2_contig85.16630.1 ID=prot_E_fasciculatus_S2_contig85.16630.1|Name=mRNA_E_fasciculatus_S2_contig85.16630.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1509bp SHVSVALCNVAAATQCETQLLSPRNDGSVATPEPASTQDKAAVNEGGGAGback to top mRNA from alignment at E_fasciculatus_S2_contig85:18723..30448+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig85.16630.1 ID=mRNA_E_fasciculatus_S2_contig85.16630.1|Name=mRNA_E_fasciculatus_S2_contig85.16630.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=11726bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:18723..30448+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig85:18723..30448+ >mRNA_E_fasciculatus_S2_contig85.16630.1 ID=mRNA_E_fasciculatus_S2_contig85.16630.1|Name=mRNA_E_fasciculatus_S2_contig85.16630.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=4527bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:18723..30448+ (Ectocarpus fasciculatus EfasUO2)back to top |