mRNA_E_fasciculatus_S2_contig85.16628.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKB5_ECTSI) HSP 1 Score: 1602 bits (4147), Expect = 0.000e+0 Identity = 860/1065 (80.75%), Postives = 912/1065 (85.63%), Query Frame = 1
Query: 1 RTNEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGEHLKGLPFNRQQEQPGSFDVVYTSPLVRAVQTAVCVSQSLGNLPLQVVPGLCSCTAALRHVGYSNAEATLMTDEDIIEAFPGVTVVPRDPLAPTSFGGAAEWLATKACEKKGAGSDSDDQCFSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNTSEKKLCTYEIHDLLSNTGKTLKPKGESPYARPTWTLTEEENRPRNDDEDDGGEVEALAARVAALSVNMKGPKPRAKKHHGATEGAQQRASTGRGVNSRKNSGARQDDEERHSSSRPTGLVRRLRGASKSLLSPAGTSKQPTGRRSGPQADRGNTAVP---EVSTQKPPRRSISKGTAVGLVGRGKGGGAASGGXECXXXXXXXXXPDSGSQKGSSTGTKKDYLVSGGRVSAGGGGKGVAPREGALAGRGFRVAVCRSSRRRAVGGGSTFAGFLGVPVDVLCGSSGVLSFLSATELCTAQAICTSIAPATVNDYLWGELYARLPEGLRNRSKGVIPPVGESGITPVKAAARLHPKVLFTSAVSIASSMHAAKIARKVATAKRRVGVIHNLRGSVGAIRGDISVTINGKPVSVVQTTGAKTGAWVSRPSLVSEPSVNHNGVRTFSLSSSAKIDVPTSLETVTDLRSMCVALSWPDKDAALLPRIAVARFDERLILCPARALGTSVDKAIALYDVTGSSRNSSSSSERCGGHTCTKKTTPSSPVRRGCALLGVLPPGSEGGKRGSGTGAGGVAFLTVHFPHELLLDVATHGRRRVTGRSAPNSGSGTRGRYFGDDSAGPRHGLEGFATALGLRTAGIPLWEKASTAVDGRVCPPRNVVPQLQQSPVGDDPGAAVVCIDIMRPGASKAGSFGDGAAAVSDSDRTLSSGPGMPYSTPGGLSGTVADVLLADFTLYDPDGACLWAFTLPVVFAACPAGGSAPNPGGSRSRXXXXXXXXTVDMAHRELREERRRGIVAESGVGRVIVELALVESPSERDQNDVVGSSQRGSCPAGHMWVVRSARVELELEFVNTWFGTKHGSP 3186
RTNEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAG+HLKGLPFNRQQ+QPGSFDVV+TSPLVRAVQTAVC+SQSLGNLPLQVVPGLCSCTAALRH+GYS+AEATL+TDEDIIEAFPGVT+VPRDPLAPTSFGGAA WLA KACEK+GAGSD D +CFSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVN EKKLCTYEIHDLLSNTGK+LKPKGESPYARPT T+ EEE+RPRN+ ED GGEVEALAARVAAL+VNMKGPKPRAK H GA E AQ+RASTGRG NSR+N Q+D++R SSSRPTGL+RRLRGASKSLLS A E+STQK RRS KGTAVG+VG X XXXXXXXXX K LVSGG VSA GGGK VAPREG+LAGRGFRVAV RSSRRRAVGGGSTFAGFLGVPVDVLCGSSGVLSFLS TELCTAQAICTSIAPAT+N+YLWGELYARLPEGL+NRSKGV+P GES I P KAAA +HPKVLF AVSIASSMHAAKIA+KVAT KRRVGVI+NLR SV A+RGDISVTINGK VSVVQTTGAKTGAWVSRP++VSEPSVNHNGVRTFSLSSSAKIDVPTSLETV DLRSMCVALSWP K+A LLPRI VAR DER +L PARALG SVD AI LYD+TGSS HTCT +TTPSSPVRRGCALLGVLP GS GG+R SGT GGVAFLTVHFPHELLLDVATHG RR T R+ P+ GS TRGRY GDDSAGP HGLEGFATALGLRTAG+PLWEKASTAVDGRVCPPRNV PQLQQSPVGDDPGAAVV IDI+ PGA+ A SFG GAAAVSD DRTLSSGPG+PY TPGGLSGTVADVLLADFTLYDPDGA +WAFTLP+VFAACPA GSAPNPGGS XXXXX T+DMA RELREERRRGIV ESGVGRVIVELALVESP+ERD+NDVVGSSQ+ SCPAGHMWVVRSARVEL+L FVNTWFGTKHGSP
Sbjct: 2 RTNEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGQHLKGLPFNRQQKQPGSFDVVFTSPLVRAVQTAVCISQSLGNLPLQVVPGLCSCTAALRHIGYSSAEATLLTDEDIIEAFPGVTIVPRDPLAPTSFGGAASWLAAKACEKQGAGSDGDGECFSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNAPEKKLCTYEIHDLLSNTGKSLKPKGESPYARPTSTMMEEESRPRNEHEDGGGEVEALAARVAALTVNMKGPKPRAKNHSGAKEDAQRRASTGRGANSRENXXXXQNDQDRRSSSRPTGLMRRLRGASKSLLSAAXXXXXXXXXXXXXXXXXXXXXXXXXXEISTQKSTRRSTGKGTAVGVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKGDLVSGGPVSAAGGGKNVAPREGSLAGRGFRVAVHRSSRRRAVGGGSTFAGFLGVPVDVLCGSSGVLSFLSPTELCTAQAICTSIAPATMNEYLWGELYARLPEGLKNRSKGVLPAGGESEIYPEKAAAHVHPKVLFAIAVSIASSMHAAKIAKKVATVKRRVGVIYNLRVSVVAMRGDISVTINGKSVSVVQTTGAKTGAWVSRPNIVSEPSVNHNGVRTFSLSSSAKIDVPTSLETVKDLRSMCVALSWPGKEATLLPRIVVARIDERPVLSPARALGKSVDNAIVLYDITGSSXXXXXXXXXXXXHTCTTRTTPSSPVRRGCALLGVLPSGSHGGQRDSGTDDGGVAFLTVHFPHELLLDVATHGPRRATERNVPSGGSSTRGRYLGDDSAGPGHGLEGFATALGLRTAGVPLWEKASTAVDGRVCPPRNVAPQLQQSPVGDDPGAAVVRIDILHPGANNAASFGGGAAAVSDPDRTLSSGPGVPYYTPGGLSGTVADVLLADFTLYDPDGASIWAFTLPIVFAACPAEGSAPNPGGSSXXXXXXX---TIDMARRELREERRRGIVTESGVGRVIVELALVESPTERDENDVVGSSQKRSCPAGHMWVVRSARVELDLGFVNTWFGTKHGSP 1063
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB9_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 1.110e-155 Identity = 227/281 (80.78%), Postives = 248/281 (88.26%), Query Frame = 1
Query: 1 RTNEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGEHLKGLPFNRQQEQPGSFDVVYTSPLVRAVQTAVCVSQSLGNLPLQVVPGLCSCTAALRHVGYSNAEATLMTDEDIIEAFPGVTVVPRDPLAPTSFGGAAEWLATKACEKKGAGSDSDDQCFSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNTSEKKLCTYEIHDLLSNTGKTLKPKGESPYARPTWTLTEEENRPRNDDEDDGGEVEALAARVAALSVNMKGPK 843
RTNEVWHVRHGERCDEV GEE++AWE+SPRC GGWFDPFLT GHVQACRAGEHLKGLPFNRQQ+QPGSFD+VYTSPL+RAVQTAVC+SQSLGNLPLQVVPGLCSCTAAL +GYS+AEATLMTD+DIIEAFPGVT+VP DPLAPTSF GAAEWLA KACEKKGAGSD D +CFSRVLAVGHREGT+ MA + VPTP+CCIGIFKV E+ YE+HDLL NTG++LK GES YARP +EEENRPRNDDED GEVEALAAR+AALS NMKGPK
Sbjct: 29 RTNEVWHVRHGERCDEVWGEEQQAWERSPRCNEGGWFDPFLTRDGHVQACRAGEHLKGLPFNRQQKQPGSFDIVYTSPLLRAVQTAVCISQSLGNLPLQVVPGLCSCTAALSEIGYSSAEATLMTDKDIIEAFPGVTIVPTDPLAPTSFEGAAEWLAAKACEKKGAGSDGDGECFSRVLAVGHREGTKEMARKNVPTPYCCIGIFKVKAEEENWYPYELHDLLINTGESLKSSGESAYARPKVATSEEENRPRNDDEDGDGEVEALAARIAALSDNMKGPK 309
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV6_9PHAE) HSP 1 Score: 238 bits (608), Expect = 4.990e-65 Identity = 155/301 (51.50%), Postives = 181/301 (60.13%), Query Frame = 1
Query: 7 NEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGEHLKGLPFNR--------QQEQPGS-FDVVYTSPLVRAVQTAVCVSQSLGNLPLQVVPGLCSCTAAL-RHVGYSNAEATLMTDEDIIEAFPGVTVVPRDPLAPTSFGGAAEWLATKACEKKGAGSDSDDQCFSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNTSEKK----LCTYEIHDLLSNTGKTLKPKGESP--YARP--TWTLTEEENRPRNDDEDDGGEVEALAARVAALSVNMKGPKPRAK 855
NEVWHVRHG+ P K FDP LT GHVQA AG +L LPFNR QQ+QPG FDVVYTSPL RAVQTAVC+S +LG LPL+VVPGLCS TAAL R G+ + EA LMTD DI EAFPGV V PRDPLAPT+F GA WLA KACE A +VG EG + VPTPHCCIG+F+V + + YE+HDLL++TG++L P G P YARP T T E+ + + DDG EALAARV AL+V+ +G K AK
Sbjct: 150 NEVWHVRHGK----------------PGRKTLEIFDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRQPQQQQPGEGFDVVYTSPLARAVQTAVCLSWALGGLPLEVVPGLCSSTAALVRRGGFPSVEAELMTDGDIAEAFPGVVVRPRDPLAPTTFDGALAWLAAKACEGTTA--------MVANSSVG--EGKEEV----VPTPHCCIGVFRVAEAGEGGGGGTWAYELHDLLASTGESLGPWGGEPSSYARPLRTAAATPEDGKNGSRSGDDGAAAEALAARVMALTVHTEGSKRGAK 420
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR2_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.600e-38 Identity = 127/298 (42.62%), Postives = 151/298 (50.67%), Query Frame = 1
Query: 7 NEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGEHLKGLPFNR---------QQEQPGS-FDVVYTSPLVRAVQTAVCVSQSLGNLPLQVVPGLCSCTAAL-RHVGYSNAEATLMTDEDIIEAFPGVTVVPRDPLAPTSFGGAAEWLATKACEKKGAGSDSDDQCFSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNTSEKKLCTYEIHDLLSNTGKTLKPKGESP--YARPTWTL--TEEENRPRNDDEDDGGEVEALAARVAALSVNMKGPKPRAK 855
+EVWHVRHG+ P K FDP LT GHVQA AG +L LPFNR QQ+ PG FDVVYTSPL RAVQTAVC+S++LG+LPL+VVPGLCSCTAAL R G+ + EA LMTD DI EAFPGV V REG R GR G + YE+HDLL++TGK+L P+G P YARP T+ T E+ + + DDG EALAARV AL+V+ + K AK
Sbjct: 154 SEVWHVRHGK----------------PGRKTLEIFDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRRQPQQQLPGEGFDVVYTSPLARAVQTAVCLSRALGDLPLEVVPGLCSCTAALVRRGGFPSVEAELMTDGDIAEAFPGVAV-----------------------------------------RHNQREGERR-GGR---------GAW----------AYELHDLLASTGKSLGPRGGEPSSYARPLGTVAATPEDGENGSWNGDDGPAAEALAARVMALTVHTERSKLGAK 374
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI4_9PHAE) HSP 1 Score: 112 bits (279), Expect = 7.150e-26 Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 55 GEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGEHLKGLPFNRQQEQPGSFDVVYTS 231
GEE++AWE+SPRCKA GWFDPFLT GH+Q CRAGEHLKGLPFNRQQ+QPGSFD+V S
Sbjct: 17 GEEQQAWERSPRCKASGWFDPFLTRDGHLQVCRAGEHLKGLPFNRQQKQPGSFDIVRPS 75
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GED0_9EUKA) HSP 1 Score: 98.2 bits (243), Expect = 1.770e-17 Identity = 81/216 (37.50%), Postives = 101/216 (46.76%), Query Frame = 1
Query: 10 EVWHVRHGERCDEVRGEERRAWEKS-PRCKAGG-WFDPFLTSYGHVQACRAGEHLKGLPFNRQQEQPGSFDVVYTSPLVRAVQTAVCVSQSLGNLPLQVVPGLCSCTAALRHVGYSNAEA--TLMTDEDIIEAFPGVT-VVPRDPLAPTSFGGAAEWLATKACEKKGAGSDSDDQCFSRVLAVGHREGTRAMAGRKVP---------TPHCCIGIF 615
EV+ VRHGER DEV GEERR W S +C G FDP LT +G QA A L+ L QP FDVV+ SPLVR VQTA + + G +P+ +VPGL C AAL H S L E + P + VP P F A + + RVL + HRE R++A R+ TP+ CIG+F
Sbjct: 282 EVYIVRHGERVDEVDGEERRRWITSLEQCADGNDGFDPPLTIHGVAQAADAARSLRAL-----LPQPKPFDVVFCSPLVRCVQTAEHFAYTFG-IPITLVPGLGECCAALHHRSRSAKRRWPLLQPLEQLRVLCPRASFTVPDIASLPERFEDGPLTCAGSLAQGR-----------RRVLLISHRESIRSLAKRQQSKDRKSDDRNTPYACIGLF 480
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GIZ6_9ALVE) HSP 1 Score: 76.3 bits (186), Expect = 4.330e-11 Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 13 VWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGEHLKGLPFNRQQEQPGSFDVVYTSPLVRAVQTAVCVSQSLGNLPLQVVPGLCSCTAAL 333
+W VRH ER DE R E AW+ C WFDP LT GH A E LK + Q +FD VYTSP++R++QTA +++ LG + +QVV GL +CTAAL
Sbjct: 31 LWIVRHAERMDEAREE---AWKWREVC-GERWFDPPLTDKGHEMARNCAEVLKEIA----TAQGVTFDAVYTSPMMRSLQTADPLARVLG-VDVQVVSGLAACTAAL 128
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Match: Uncharacterized (protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UER2_SALR5) HSP 1 Score: 72.8 bits (177), Expect = 2.030e-9 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 13 VWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGEHLKGLPFNRQQEQPGSFDVVYTSPLVRAVQTAVCVSQSLGNLPLQVVPGLCSCTAALRH 339
V+ +RH ER + + EE W KS R +DP +T G QA A HL+ R EQP F +Y+SPL+R +QTAV V+ LG +P+++V GL +CT ALR+
Sbjct: 127 VYLLRHAERAENM--EEHETWLKSGRV-----YDPPITERGRQQALTASAHLQ----QRHAEQP--FACIYSSPLMRCMQTAVIVADHLG-IPIRIVQGLAACTRALRN 221 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig85.16628.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig85.16628.1 >prot_E_fasciculatus_S2_contig85.16628.1 ID=prot_E_fasciculatus_S2_contig85.16628.1|Name=mRNA_E_fasciculatus_S2_contig85.16628.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1063bp RTNEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACback to top mRNA from alignment at E_fasciculatus_S2_contig85:3958..7769- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig85.16628.1 ID=mRNA_E_fasciculatus_S2_contig85.16628.1|Name=mRNA_E_fasciculatus_S2_contig85.16628.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3812bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:3958..7769- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig85:3958..7769- >mRNA_E_fasciculatus_S2_contig85.16628.1 ID=mRNA_E_fasciculatus_S2_contig85.16628.1|Name=mRNA_E_fasciculatus_S2_contig85.16628.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3189bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:3958..7769- (Ectocarpus fasciculatus EfasUO2)back to top |