mRNA_E_fasciculatus_S2_contig85.16633.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig85.16633.1
Unique NamemRNA_E_fasciculatus_S2_contig85.16633.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig85.16633.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig85contigE_fasciculatus_S2_contig85:40610..40946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size338
Hectar predicted targeting categorysignal anchor
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842508.5840995-CDS-E_fasciculatus_S2_contig85:40609..409421696842508.5840995-CDS-E_fasciculatus_S2_contig85:40609..40942Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig85 40610..40942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842508.596012-UTR-E_fasciculatus_S2_contig85:40942..409461696842508.596012-UTR-E_fasciculatus_S2_contig85:40942..40946Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig85 40943..40946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig85.16633.1prot_E_fasciculatus_S2_contig85.16633.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig85 40610..40942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig85.16633.1

>prot_E_fasciculatus_S2_contig85.16633.1 ID=prot_E_fasciculatus_S2_contig85.16633.1|Name=mRNA_E_fasciculatus_S2_contig85.16633.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
PNCHPRSNFANICCVGSTRGSVLACPPPITSGSELPILPSFASQALARPR
LFLPLLVLATIIVISLRCFRCFRYRRLRHRPAILCRCTLIFGKFVVAGVG
IAHGEGLAAS*
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mRNA from alignment at E_fasciculatus_S2_contig85:40610..40946+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig85.16633.1 ID=mRNA_E_fasciculatus_S2_contig85.16633.1|Name=mRNA_E_fasciculatus_S2_contig85.16633.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=337bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:40610..40946+ (Ectocarpus fasciculatus EfasUO2)
CCTAACTGTCATCCTCGGTCCAATTTTGCCAACATTTGCTGTGTAGGGAG
CACCAGGGGATCCGTCCTCGCCTGTCCTCCTCCGATTACATCGGGGTCGG
AACTTCCGATCTTACCCTCATTCGCATCACAGGCACTGGCGCGTCCTCGC
TTGTTCCTTCCGCTGTTGGTGCTGGCCACCATCATCGTCATCTCTTTGCG
CTGTTTTCGTTGTTTTCGTTATCGCCGCCTCCGCCACCGTCCGGCCATTC
TTTGTCGGTGTACGCTCATTTTCGGCAAGTTTGTTGTCGCCGGTGTTGGT
ATAGCTCATGGAGAGGGTCTTGCTGCCTCTTGATTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig85:40610..40946+

>mRNA_E_fasciculatus_S2_contig85.16633.1 ID=mRNA_E_fasciculatus_S2_contig85.16633.1|Name=mRNA_E_fasciculatus_S2_contig85.16633.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:40610..40946+ (Ectocarpus fasciculatus EfasUO2)
CCTAACTGTCATCCTCGGTCCAATTTTGCCAACATTTGCTGTGTAGGGAG
CACCAGGGGATCCGTCCTCGCCTGTCCTCCTCCGATTACATCGGGGTCGG
AACTTCCGATCTTACCCTCATTCGCATCACAGGCACTGGCGCGTCCTCGC
TTGTTCCTTCCGCTGTTGGTGCTGGCCACCATCATCGTCATCTCTTTGCG
CTGTTTTCGTTGTTTTCGTTATCGCCGCCTCCGCCACCGTCCGGCCATTC
TTTGTCGGTGTACGCTCATTTTCGGCAAGTTTGTTGTCGCCGGTGTTGGT
ATAGCTCATGGAGAGGGTCTTGCTGCCTCTTGA
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