mRNA_E_fasciculatus_S2_contig8496.16624.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 4.900e-12 Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 106 SRCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
S+CLDAF VAL+ CD ++RWY ST ELQL SL+FC CR+V T +R+
Sbjct: 39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRV 88
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.930e-11 Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query: 109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
R DAF +ALS C+ G++RWYTST+ELQL SLD C CR+ T +R+
Sbjct: 8 RSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRV 56
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 5.550e-10 Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1
Query: 109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
RCLDAF +ALS C+ G++RWY ST ELQL SLD C CR + + +
Sbjct: 10 RCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHV 58
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 5.590e-10 Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 97 GNSSRCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
GNS +CLDAF VAL+ CD ++RWY ST ELQL SL+ C CR V T +R+
Sbjct: 5 GNS-KCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRV 56
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 4.800e-9 Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRN 231
RCLDAF VALS + G++RWYTST +LQLASL+FC CR+
Sbjct: 8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRS 48
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.640e-8 Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query: 106 SRCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
S CL AF VAL+ C+ ++RWY ST ELQL SL+FC CR V T +R+
Sbjct: 15 SECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRV 64
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 2.320e-8 Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1
Query: 109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
+C DAF VALS C+ G +R YTST EL LASLD C R+ +T +R+
Sbjct: 21 QCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRV 69
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 2.590e-8 Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query: 109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNV 234
RCL+AF VAL+ CD WYTST ELQLASL FC++CR V
Sbjct: 6 RCLEAFAVALNTSCDGNV--WYTSTKELQLASLQFCVKCRKV 45
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 3.200e-8 Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 109 RCLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNV 234
RCLDAF VAL+ CD ++WYTS + LQLASL FC+ CRNV
Sbjct: 35 RCLDAFVVALNQSCDG--KKWYTSIAGLQLASLAFCVACRNV 74
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 4.260e-8 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query: 112 CLDAFTVALSHGCDEGQRRWYTSTSELQLASLDFCLECRNVTTSRIRM 255
CL+A VAL+ CD + WYTST ELQLASLDFC+ CRN T + +
Sbjct: 51 CLEALIVALNETCDG--KSWYTSTKELQLASLDFCIACRNCQTVHLNV 96 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8496.16624.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8496.16624.1 >prot_E_fasciculatus_S2_contig8496.16624.1 ID=prot_E_fasciculatus_S2_contig8496.16624.1|Name=mRNA_E_fasciculatus_S2_contig8496.16624.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=85bp TTVSYIPCAETLFLYSSYRNTSTQRMPAAPLSGNSSRCLDAFTVALSHGCback to top mRNA from alignment at E_fasciculatus_S2_contig8496:2579..2834+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8496.16624.1 ID=mRNA_E_fasciculatus_S2_contig8496.16624.1|Name=mRNA_E_fasciculatus_S2_contig8496.16624.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=256bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8496:2579..2834+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8496:2579..2834+ >mRNA_E_fasciculatus_S2_contig8496.16624.1 ID=mRNA_E_fasciculatus_S2_contig8496.16624.1|Name=mRNA_E_fasciculatus_S2_contig8496.16624.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=255bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8496:2579..2834+ (Ectocarpus fasciculatus EfasUO2)back to top |