mRNA_E_fasciculatus_S2_contig8494.16623.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8494.16623.1
Unique NamemRNA_E_fasciculatus_S2_contig8494.16623.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8494.16623.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K564_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.100e-18
Identity = 65/100 (65.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  493 QRRGKQQMARLQNPRASYLEKLVHVQPQQXXXXXXXXXDEGPEDVAGVARDGADIALAAAPGDVDLRWQPLGAPSRPEEATTAGXXXXXXXXXVGDIDFG 792
            QRRGKQQ A+ Q+P ASYLEKLVHVQ   XXXXXXXXX   PED   V RD   IALAAAPGDV  RWQPLGAPSRP++ TTAG          GD  FG
Sbjct:    6 QRRGKQQKAQPQDPPASYLEKLVHVQXXXXXXXXXXXXXXRPEDAVRVDRDSTHIALAAAPGDVGPRWQPLGAPSRPDKTTTAGGAGDGTGGDAGDNGFG 105
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8494.16623.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.100e-1865.00protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8494contigE_fasciculatus_S2_contig8494:667..3902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_001500.1
Cds size816
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842508.2065961-CDS-E_fasciculatus_S2_contig8494:666..10501696842508.2065961-CDS-E_fasciculatus_S2_contig8494:666..1050Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8494 667..1050 -
1696842508.2184253-CDS-E_fasciculatus_S2_contig8494:1813..19231696842508.2184253-CDS-E_fasciculatus_S2_contig8494:1813..1923Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8494 1814..1923 -
1696842508.229559-CDS-E_fasciculatus_S2_contig8494:2680..28981696842508.229559-CDS-E_fasciculatus_S2_contig8494:2680..2898Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8494 2681..2898 -
1696842508.2487946-CDS-E_fasciculatus_S2_contig8494:3798..39021696842508.2487946-CDS-E_fasciculatus_S2_contig8494:3798..3902Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8494 3799..3902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8494.16623.1prot_E_fasciculatus_S2_contig8494.16623.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8494 667..3902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8494.16623.1

>prot_E_fasciculatus_S2_contig8494.16623.1 ID=prot_E_fasciculatus_S2_contig8494.16623.1|Name=mRNA_E_fasciculatus_S2_contig8494.16623.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=272bp
MMKEGDGLASTWPKATTAVARRKSSKLFHRTTGSSGLIDAECGGGAGDEN
VPDEDSPSPPRVRRRSSKHGVGVSTARRNSALCLALCVSATSLVWIITRN
TNGGPGAGFDTLGPWSVGLKTPGRNRPSTTVRAGSNWVPTDPEQVTDSIG
AGPEEAFRRAAAARQRRGKQQMARLQNPRASYLEKLVHVQPQQQQQQQQQ
QQDEGPEDVAGVARDGADIALAAAPGDVDLRWQPLGAPSRPEEATTAGGG
GGGTGGDVGDIDFGGGGGGGGG
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mRNA from alignment at E_fasciculatus_S2_contig8494:667..3902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8494.16623.1 ID=mRNA_E_fasciculatus_S2_contig8494.16623.1|Name=mRNA_E_fasciculatus_S2_contig8494.16623.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3236bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8494:667..3902- (Ectocarpus fasciculatus EfasUO2)
ATGATGAAGGAGGGAGATGGGCTGGCAAGCACCTGGCCGAAAGCAACGAC
AGCAGTAGCCCGCAGGAAGTCGTCGAAGCTGTTCCACAGAACTACCGGAT
CGAGGTGTGGTATTATATATTAGATGGCAAGTAGACTGTACTGCTGTATT
GTAGGAATCCGCAGCATGCGCGGGGTCTGTAAAAGTTTCTCTGCCAGATT
CGACGTCATCTATACCGTTCTTGCAAAGTGCCCGCCGTGGAAAGCCGATC
GAGGGCTAAATACAAAATGCATACGGGGTTAGTGTAAGGTTTTACGACAT
TGCCCCCCGCGGAGGAAGTAGCTGAATCGACGGCTCATATGCATACAATG
GCACTGTACTGCGGACGGTTGCTCGCGAAACATAGGTCATCCCCCTTCAG
CTTCTAAGCTACAGCAGTAGATAGCGTGTTGCTGCACGCAACCATTTACC
TATACCGCCCCAACACATCTCTCTCCCGCCAGACTTAGTTGCCTACTATA
CACAGATAGCCCTTTCGATTCGGAAAACGGGAGGGGAGAAAACAGAGGCA
GGCCTGTACTGTAGTTATGCTCTGTTATGTACTGACTCCATAGGTCTGAC
CGGACGTTGAACCGTAGCTCCGCACACGGGACACACCCGTGGCCGACCCA
GCCCACCCCCTAACCATATCCCTCACCCAGCGTCAACGGAGGGCCTGGTG
GCCCAAAACTAGGCACCGCGTTCTCAGAAGACTGCGAACAGCGAGAGAGA
GCTGGAGCGTAAAAGATCCCTCGAAAAAGAGAGGGTGTATGCATACAGGC
CTTCGATAGGAAACGTCACTCAACAGACCGAACAAACTCCTGAGAAAACA
CACCAGCGAGCAGTGTCCTGCGCACAAATGCGTCCAACATTCACCACACA
TCCCAACGCCCGGTTCACTGCTGTGCGTCACAACCTTCTACCATACACAA
CGTACAAAACTTTTGCCCTTCTTTCCCGAAACCCATGCTCTCATCCACCA
CTAGCGGCCTCATCGACGCAGAATGCGGAGGGGGGGCAGGGGACGAGAAC
GTGCCGGATGAAGACTCCCCCAGTCCGCCGCGAGTACGCCGAAGGTCCAG
CAAGCATGGCGTAGGGGTCTCGACGGCCCGGCGGAACAGTGCCCTCTGCC
TCGCCCTCTGCGTCTCCGCGACGTCTCTCGTCTGGATCATCACGAGAAAC
ACGAACGGAGGGCCCGGTGCTGGTAAGTCGTGGCAGCAGCGCGCCCCCAA
CCCCCTTTTTACAATACATCGAAAATCAGCTCGGTTGTCAGTCTTTGCCT
TCCCGGGGGCATGGTTCTCTTGCCGGTAGTGTACCATGGTCAGCACTCAA
TACGTGTCAAGTTACGTATCAGCGCGGTATGCAACATGGATGGTTTTGCC
CAAGACAAGTCGCGCCGCTGACTGTCTGTTACTCTCGTATGACGATCACC
AAGGTATACCTCTGGGCAATGTGTGTGTGTGTGTCGACAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACGAAGAGTTAGATTTCAT
GTGCCGCCCCCAATGAAAGGGTACTTGTGCCAAGGACCAAGTGCTCAGGA
AGAAAGAGCACGCCAACATTCCTAGCATGTGGTTCAGCTGCCAACAGCTC
CCCGTATCTTTTCCAATTCCGTGGCTACTCCCACCAATCGATATGAAAAC
AGTAGACAAGCGTGGGTCCTTGGTCGAACTTTTTGCGAGGCTCTGTTTCC
GGCAAGACGACCAAGAGTTCTACCGCAAGAACGGTAGGTGAAATCACGCC
TCACTTTACCGTGGCGTCTTGAGAGGTTGTTGGTTGACGATGACATTTTC
CCTCCCTCAGCAGCCCCGTCACGGTTCCTGCGCCCACCAGCCACGGTGCC
GTGGGCTATGAAACACACGGTACTAGACTAGCCTCCGAGGGCTGAAAGAC
GAAACGTTACATGGTCATCGACTCTGCAGGATTCGATACCCTCGGCCCCT
GGAGCGTCGGCCTAAAAACGCCAGGGAGGAACAGGCCGTCCACGACAGTA
AGGGCCGGGTCAAACTGGGTACCTACCGACCCCGAACAGGTGTGTGGGGG
AAGGAAAATCTAGCCCCCTGTTTTTTTTTTGTGCGTTGTCGTCTCATCAC
TTCTGGGTAGGTACCAGTCTACGCTGTTCGGCATGTACCGTTGCCTGGGG
TCGGTCACACAGGAGGCATTCTCTGCCTTTTTTCCTCCTGCGGTGCTTAG
CTGCTATCTAATAGGGATCCAACGGCAACAAAAAAAATGAAGCGGTGCTC
TCCCTCAAGCTGAGGGTAGCTTTTTTTATGGAATATTATTGCGTTCAAGT
TTAGGGGCGCCGGGCTTTGCGCGCAGTCTCTCTTTGGTACGCAAGCGCTC
CTTCGCGACGAACGCCTACACCAGACCAAAGGGAAAGTTGAGCGGTGATC
GTGATCCCGCCCTTGAGGTATGCAAGGGCCTGCACTGGCGAATGCTTGGC
GAGGAAACTAGCACCCGCCTCCCACTCCAATACACCAATCAATCGCTACG
ACAGTCGACGGCCCTCAGCAGTCCCAGTCTGTGCACCAACAACGCATGCG
GGCACTATTCAGAGGCACCGGCACTCTTGTTGCGCGATGAAAAAAGTTGG
TACCTTTTGTCGACGTGAATAACAACCGTGCCAACCGATTTGGCCGGCAC
CAGACCTATTCCACTAGCACTCAATAGAGAGGGGTCCTCGACTGCTGTAC
TCTTGTGTCGGACCGAAGGCGTGCCGGCGTGTGCAGCGTATTTAGTAGCA
GGCGGAACAATGACCATCCCAGCGTGCTCTTGACCCGCCGCCCCCGCCCT
AGGTTACCGACAGCATAGGAGCTGGGCCCGAAGAAGCCTTCCGCCGCGCG
GCCGCCGCCAGGCAGCGTCGAGGGAAGCAGCAGATGGCGCGGCTACAGAA
CCCTCGCGCGAGCTACCTCGAGAAGCTCGTGCATGTTCAGCCACAGCAGC
AACAGCAGCAACAACAGCAGCAACAAGACGAAGGACCGGAAGACGTGGCC
GGGGTCGCCAGAGACGGCGCCGACATCGCCCTCGCGGCCGCGCCTGGCGA
CGTCGACCTCCGATGGCAGCCTCTCGGGGCGCCCTCCCGACCGGAAGAAG
CCACCACCGCTGGTGGTGGCGGTGGTGGAACGGGGGGTGACGTGGGTGAT
ATCGATTTCGGTGGGGGTGGTGGTGGTGGTGGTGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8494:667..3902-

>mRNA_E_fasciculatus_S2_contig8494.16623.1 ID=mRNA_E_fasciculatus_S2_contig8494.16623.1|Name=mRNA_E_fasciculatus_S2_contig8494.16623.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=816bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8494:667..3902- (Ectocarpus fasciculatus EfasUO2)
ATGATGAAGGAGGGAGATGGGCTGGCAAGCACCTGGCCGAAAGCAACGAC
AGCAGTAGCCCGCAGGAAGTCGTCGAAGCTGTTCCACAGAACTACCGGAT
CGAGCGGCCTCATCGACGCAGAATGCGGAGGGGGGGCAGGGGACGAGAAC
GTGCCGGATGAAGACTCCCCCAGTCCGCCGCGAGTACGCCGAAGGTCCAG
CAAGCATGGCGTAGGGGTCTCGACGGCCCGGCGGAACAGTGCCCTCTGCC
TCGCCCTCTGCGTCTCCGCGACGTCTCTCGTCTGGATCATCACGAGAAAC
ACGAACGGAGGGCCCGGTGCTGGATTCGATACCCTCGGCCCCTGGAGCGT
CGGCCTAAAAACGCCAGGGAGGAACAGGCCGTCCACGACAGTAAGGGCCG
GGTCAAACTGGGTACCTACCGACCCCGAACAGGTTACCGACAGCATAGGA
GCTGGGCCCGAAGAAGCCTTCCGCCGCGCGGCCGCCGCCAGGCAGCGTCG
AGGGAAGCAGCAGATGGCGCGGCTACAGAACCCTCGCGCGAGCTACCTCG
AGAAGCTCGTGCATGTTCAGCCACAGCAGCAACAGCAGCAACAACAGCAG
CAACAAGACGAAGGACCGGAAGACGTGGCCGGGGTCGCCAGAGACGGCGC
CGACATCGCCCTCGCGGCCGCGCCTGGCGACGTCGACCTCCGATGGCAGC
CTCTCGGGGCGCCCTCCCGACCGGAAGAAGCCACCACCGCTGGTGGTGGC
GGTGGTGGAACGGGGGGTGACGTGGGTGATATCGATTTCGGTGGGGGTGG
TGGTGGTGGTGGTGGT
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