mRNA_E_fasciculatus_S2_contig849.16616.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig849.16616.1
Unique NamemRNA_E_fasciculatus_S2_contig849.16616.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig849.16616.1 vs.
Match: AAA_12 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 7.000e-61
Identity = 142/219 (64.84%), Postives = 147/219 (67.12%), Query Frame = 1 
Query:    1 EARPS---EGRARDRPPVEKRQQRHEEAGGAKPTPQGSASKXXXXXXXXXXQKRARVTGQEAAKKVSTPNGGFLGGLLNSLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXXXAPRLGGARVTELSRPVERKQAPPARHSPRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTDARNGGRAVGASSASTGDTRRAAPSTERRDGSS 648
            E RPS   E   RDRPPVEK QQRHEEAGGAKPTP+GSA K          QKRARV GQEAAK+VSTP+ GFLGGLL+SLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXX APRLGGARVTELSRPVER+QAP ARHS R A                                        RTDARNGGR VG SSAST D RR APST RRD SS
Sbjct:  404 EVRPSARLEESMRDRPPVEKHQQRHEEAGGAKPTPRGSACKRPDGGAANRPQKRARVYGQEAAKRVSTPDSGFLGGLLSSLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXXAAPRLGGARVTELSRPVEREQAPSARHSSRAAAAADATGRQTPVERDDRGGRGSHRGVDSTEVVPPS----TRTDARNGGRVVGTSSASTVDARRVAPSTARRDASS 618
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BLAST of mRNA_E_fasciculatus_S2_contig849.16616.1 vs.
Match: Presumed (helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 2.400e-59
Identity = 130/211 (61.61%), Postives = 137/211 (64.93%), Query Frame = 1 
Query:   16 EGRARDRPPVEKRQQRHEEAGGAKPTPQGSASKXXXXXXXXXXQKRARVTGQEAAKKVSTPNGGFLGGLLNSLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXXXAPRLGGARVTELSRPVERKQAPPARHSPRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTDARNGGRAVGASSASTGDTRRAAPSTERRDGSS 648
            EG  RDRPPV+KRQQRHEEAGGAKPTP+GSA +          QKRAR  GQ AAK+VSTP+GGFLGGLL+SLSSNAGGIASGKEHDFRQGLRGGED        APRLGGARVTELSRPVE KQAPPARHS R A                                         TDARNGGRAVG SSAST + RR APST RRD SS
Sbjct:  888 EGSVRDRPPVDKRQQRHEEAGGAKPTPRGSACRRPDGGAANRPQKRARADGQGAAKRVSTPDGGFLGGLLSSLSSNAGGIASGKEHDFRQGLRGGEDEERRRVAAAPRLGGARVTELSRPVEPKQAPPARHSSRAAAAATGRQTPVESDDRGGRGSHRGGGFTGVVPPSTP------TDARNGGRAVGTSSASTVNARRVAPSTARRDASS 1092
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16616.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
AAA_127.000e-6164.84domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Presumed2.400e-5961.61helicase required for RNA polymerase II transcript... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig849contigE_fasciculatus_S2_contig849:17076..18473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score213.4
Seed ortholog evalue1.1e-52
Seed eggNOG ortholog2880.D8LLI3
Model size668
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
Cds size666
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842507.528485-CDS-E_fasciculatus_S2_contig849:17077..174401696842507.528485-CDS-E_fasciculatus_S2_contig849:17077..17440Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 17078..17440 -
1696842507.5438125-CDS-E_fasciculatus_S2_contig849:18170..184731696842507.5438125-CDS-E_fasciculatus_S2_contig849:18170..18473Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 18171..18473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig849.16616.1prot_E_fasciculatus_S2_contig849.16616.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig849 17078..18473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig849.16616.1

>prot_E_fasciculatus_S2_contig849.16616.1 ID=prot_E_fasciculatus_S2_contig849.16616.1|Name=mRNA_E_fasciculatus_S2_contig849.16616.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=222bp
EARPSEGRARDRPPVEKRQQRHEEAGGAKPTPQGSASKRPDGAVANRPQK
RARVTGQEAAKKVSTPNGGFLGGLLNSLSSNAGGIASGKEHDFRQGLRGG
EDDERRRAAAAPRLGGARVTELSRPVERKQAPPARHSPRTAAAAAGAAVV
AGRQTLAESDDRGGRRSHGGGGSAGVVPSSARTDARNGGRAVGASSASTG
DTRRAAPSTERRDGSSSARGFD
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mRNA from alignment at E_fasciculatus_S2_contig849:17076..18473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig849.16616.1 ID=mRNA_E_fasciculatus_S2_contig849.16616.1|Name=mRNA_E_fasciculatus_S2_contig849.16616.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1398bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:17076..18473- (Ectocarpus fasciculatus EfasUO2)
GAAGCGAGACCATCCGAAGGGAGGGCACGAGACCGTCCGCCGGTCGAAAA
ACGCCAGCAGCGCCATGAAGAAGCGGGAGGGGCGAAGCCAACACCCCAAG
GATCGGCTAGCAAACGGCCGGACGGTGCGGTTGCGAACCGTCCGCAAAAG
CGGGCACGAGTTACCGGTCAGGAAGCGGCGAAGAAAGTTAGCACTCCTAA
CGGCGGGTTTCTTGGCGGGTTGCTCAACTCTTTGAGCTCGAACGCGGGCG
GAATCGCCTCGGGGAAAGAGCACGACTTCCGGCAAGGGCTGAGAGGCGGC
GAGGTGGGTTTAGGTTGATCTTTGAGCATGGGTCCATCCTTTTTTTTTAT
CCTTTGCCGATGAAGGAGAAGGGATATCACTCCAGACGGTGTCGGTGAAC
GGCCCTCCGAAACTCCACGTTGCATTTCCTCACGTTCAGCCATTTGCCCT
AGGCATTGGACTATGTGGCGCCGATGATTTTGTGCCGCACTCCTGGCAGC
ACTTGACCCTCCCAGTTTTGTCGGGGGAATCTCCCCACACTCGCGTCTAG
TAGTTTGTTCCCGTGGTCCTTGTAGTGGTGCTCTCTCGAATCGCCGAGAT
CGCTAGAGGTCCTCGTTTGTTTGGACAAGCCACCCGTCACAGAGGAGAAA
CCAAACCATTGGCGCCTAAAGCGTGCTCGGACACTTGAGTTTTGTACGAA
GCTTGAGGTTCTTCGGCCCTTGGCACATGGTCTGAAAAATTCAAGAAGGC
GAAGTTTGGGCGGGACCACCGACCGCCGCAGTATGACCTCACCAAATCCA
ACTCTCACATTAAATGATTCACACTGAGAACGATCATACAATACAGAAAC
AAGGACTCTATATTTCCATGCCCTCAGCCACTACTCTCTCGGTTAGGACC
ACCGGACCTTCGGCGGTTTTAAAACTACCCAACCTTTCTCCATCGGCAGG
AGTGTCCATCGACCTCTAGCACCAGGCTCCCCTCCACTCATATGCCATAT
TTCGCATTTCATGGTTGCACCGCACGAACGAAGGATGACGAACGGAGGCG
AGCGGCAGCAGCCCCGCGCCTCGGCGGCGCCCGAGTAACCGAACTCAGCC
GCCCGGTAGAGCGCAAGCAAGCTCCGCCTGCCCGCCACTCCCCCCGAACG
GCCGCCGCCGCCGCCGGTGCCGCCGTCGTCGCCGGCCGCCAAACACTCGC
CGAAAGTGACGATCGCGGCGGACGAAGAAGCCACGGTGGTGGGGGCTCCG
CTGGAGTGGTTCCGTCCTCAGCCCGGACCGATGCCAGGAACGGTGGCCGT
GCTGTAGGGGCCAGCAGCGCCAGCACCGGGGATACAAGGCGTGCGGCCCC
CTCGACAGAGCGAAGAGACGGTAGTAGCTCCGCCCGTGGCTTTGACAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig849:17076..18473-

>mRNA_E_fasciculatus_S2_contig849.16616.1 ID=mRNA_E_fasciculatus_S2_contig849.16616.1|Name=mRNA_E_fasciculatus_S2_contig849.16616.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=666bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:17076..18473- (Ectocarpus fasciculatus EfasUO2)
GAAGCGAGACCATCCGAAGGGAGGGCACGAGACCGTCCGCCGGTCGAAAA
ACGCCAGCAGCGCCATGAAGAAGCGGGAGGGGCGAAGCCAACACCCCAAG
GATCGGCTAGCAAACGGCCGGACGGTGCGGTTGCGAACCGTCCGCAAAAG
CGGGCACGAGTTACCGGTCAGGAAGCGGCGAAGAAAGTTAGCACTCCTAA
CGGCGGGTTTCTTGGCGGGTTGCTCAACTCTTTGAGCTCGAACGCGGGCG
GAATCGCCTCGGGGAAAGAGCACGACTTCCGGCAAGGGCTGAGAGGCGGC
GAGGATGACGAACGGAGGCGAGCGGCAGCAGCCCCGCGCCTCGGCGGCGC
CCGAGTAACCGAACTCAGCCGCCCGGTAGAGCGCAAGCAAGCTCCGCCTG
CCCGCCACTCCCCCCGAACGGCCGCCGCCGCCGCCGGTGCCGCCGTCGTC
GCCGGCCGCCAAACACTCGCCGAAAGTGACGATCGCGGCGGACGAAGAAG
CCACGGTGGTGGGGGCTCCGCTGGAGTGGTTCCGTCCTCAGCCCGGACCG
ATGCCAGGAACGGTGGCCGTGCTGTAGGGGCCAGCAGCGCCAGCACCGGG
GATACAAGGCGTGCGGCCCCCTCGACAGAGCGAAGAGACGGTAGTAGCTC
CGCCCGTGGCTTTGAC
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