mRNA_E_fasciculatus_S2_contig8487.16612.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8487.16612.1
Unique NamemRNA_E_fasciculatus_S2_contig8487.16612.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8487.16612.1 vs.
Match: C3H1-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L565_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.940e-12
Identity = 52/102 (50.98%), Postives = 57/102 (55.88%), Query Frame = 3 
Query:   30 PLVSPGDGQAGGLHRTNGADMPSQPPAGGD-GTAETTAGGIGGTRKDTGGAVASDPXXXXXXXXXXXXXXAPAGAXXXXTAPALPKDGQDDGAAAHGTSPAR 332
            PLV  GDGQAGGL RT+GA++PSQPPAG D G   + +GG     K   GA   D               AP GA    TAPA  KDGQDD AAAH T PAR
Sbjct:  910 PLVPSGDGQAGGLPRTSGAEVPSQPPAGDDDGAVSSDSGG-----KHGNGAGGDD--------------NAPTGAAPARTAPASAKDGQDDRAAAHETPPAR 992
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BLAST of mRNA_E_fasciculatus_S2_contig8487.16612.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.770e-7
Identity = 34/59 (57.63%), Postives = 37/59 (62.71%), Query Frame = 3 
Query:   18 QQQQPLVSPGDGQAGGLHRTNGADMPSQPPAGGDGTAETTAGGIGGTRKDTGGAVASDP 194
            QQQQPLV  GDGQAGGL RT+GA++PSQPPAG                 D GGAVA DP
Sbjct:  488 QQQQPLVPSGDGQAGGLPRTSGAEVPSQPPAG-----------------DDGGAVAPDP 529
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8487.16612.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
C3H1-type2.940e-1250.98domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.770e-757.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8487contigE_fasciculatus_S2_contig8487:3266..4037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_002380.2
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842507.2175877-CDS-E_fasciculatus_S2_contig8487:3266..33951696842507.2175877-CDS-E_fasciculatus_S2_contig8487:3266..3395Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8487 3267..3395 -
1696842507.237293-CDS-E_fasciculatus_S2_contig8487:3833..40371696842507.237293-CDS-E_fasciculatus_S2_contig8487:3833..4037Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8487 3834..4037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8487.16612.1prot_E_fasciculatus_S2_contig8487.16612.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8487 3267..4037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8487.16612.1

>prot_E_fasciculatus_S2_contig8487.16612.1 ID=prot_E_fasciculatus_S2_contig8487.16612.1|Name=mRNA_E_fasciculatus_S2_contig8487.16612.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
RKERSGSSSNRWCLPAMDKREGCTGRTGRICLPNHQREAMVPPRLLRGGL
AARGRTLVVPSRRTPVAKMKTAPAATTTPPQLALPPPRRRRHYPRTGRTM
GRRHTEPRPPA
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mRNA from alignment at E_fasciculatus_S2_contig8487:3266..4037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8487.16612.1 ID=mRNA_E_fasciculatus_S2_contig8487.16612.1|Name=mRNA_E_fasciculatus_S2_contig8487.16612.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=772bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8487:3266..4037- (Ectocarpus fasciculatus EfasUO2)
CGGAAGGAACGCAGCGGCAGCAGCAGCAACCGTTGGTGTCTCCCGGCGAT
GGACAAGCGGGAGGGTTGCACCGGACGAACGGGGCGGATATGCCTTCCCA
ACCACCAGCGGGAGGCGATGGTACCGCCGAGACTACTGCGGGGGGGATTG
GCGGCACGCGGAAGGACACTGGTGGTGCCGTCGCGTCGGACCCCGGTGGC
AAAGGTGAGCAGGCAGCACGCCTTCTATCTCTCCTCTCTGTCTCTCTCTC
TGTCTCTCCCCTTTCCCTTCCGCCTTTCCAAGACGTACGCACGTGCCGAC
TCATTTCATGTTCGCCTCTCCTGTGTATACGTCGCTCCTCTACCATGTGT
TTCACTCCACCCCCTATCTTTGACGTTCTGGTGCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTCCTGCGTCCGCCCCTCCTCGTTTCCGGC
GAGCGAGACGCCCGGGGGGGGCCGCGGGGCCCCCCCCCCNNNNNNNNNNT
TTTTTTCTCTTTTTTTTTTTTTCGTTCTTCCCTCTTCCTTTTTTTTCTTC
CCCCCCCTTTTTTTTGGTTTTTTGGTTCCCCCCCCCCCCCCCCTCCTCCC
CCCGGACGACTTGCTTCGATGTACCGCGCTTTCTTGCGACAGATGAAAAC
GGCGCCGGCGGCGACGACGACACCGCCCCAGCTGGCGCTGCCCCCGCCGC
GACGGCGCCGGCATTACCCAAGGACGGGCAGGACGATGGGGCGGCGGCAC
ACGGAACCTCGCCCGCCCGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8487:3266..4037-

>mRNA_E_fasciculatus_S2_contig8487.16612.1 ID=mRNA_E_fasciculatus_S2_contig8487.16612.1|Name=mRNA_E_fasciculatus_S2_contig8487.16612.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8487:3266..4037- (Ectocarpus fasciculatus EfasUO2)
CGGAAGGAACGCAGCGGCAGCAGCAGCAACCGTTGGTGTCTCCCGGCGAT
GGACAAGCGGGAGGGTTGCACCGGACGAACGGGGCGGATATGCCTTCCCA
ACCACCAGCGGGAGGCGATGGTACCGCCGAGACTACTGCGGGGGGGATTG
GCGGCACGCGGAAGGACACTGGTGGTGCCGTCGCGTCGGACCCCGGTGGC
AAAGATGAAAACGGCGCCGGCGGCGACGACGACACCGCCCCAGCTGGCGC
TGCCCCCGCCGCGACGGCGCCGGCATTACCCAAGGACGGGCAGGACGATG
GGGCGGCGGCACACGGAACCTCGCCCGCCCGCG
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