mRNA_E_fasciculatus_S2_contig8487.16611.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8487.16611.1
Unique NamemRNA_E_fasciculatus_S2_contig8487.16611.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8487.16611.1 vs.
Match: C3H1-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L565_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.470e-17
Identity = 73/117 (62.39%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    7 DNNNNRGRGRDDGLGVYGPNAPVPDQ-QRQGGGRRGSGGGPNYAEDAVARGQATXXXXXXAADGRDRGGGADDRDXXXXXXXXXXXXXXXXXXXRXXADDRDRDSRRGRGDSRXXGG 354
            ++NNNRG GRDDGLGVYGPNAPVP+Q QRQG     SGGG +YA+DA ARGQAT       AD RDRGGGAD RD   XXXXXXXXXX              RD+RRGRG SR  GG
Sbjct: 1221 EDNNNRGGGRDDGLGVYGPNAPVPEQHQRQGXXXXXSGGGHSYADDAAARGQATGGGGRRGADSRDRGGGADGRDGESXXXXXXXXXX--------------RDNRRGRGGSRDRGG 1323
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BLAST of mRNA_E_fasciculatus_S2_contig8487.16611.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 7.330e-12
Identity = 198/418 (47.37%), Postives = 205/418 (49.04%), Query Frame = 1 
Query:   16 NNRGRGRDDGLGVYGPNAPVPDQ-QRQGGGRRGSGGGPNYAEDAVARGQATXXXXXXAADGRDRG-----GGADDRDXXXXXXXXXXXXXXXXXXXRXXADDRDRDSRRGRGDSRXXGGXXXXXXXXXXXXXXXXXPXHXXXXXXXXXXXXXXXXXXXXXXXXXRRSGGXXXAERGRSXXXXXXXXXXXXXAEMGRDSXXXXXXXXXXXXSRDSSRVGRHETRRNSXXXX-----DRDSRDRRGGGQGRXXXXXXXXXXXXGGECNRAAHGSSGGDGREDL---RAAGRRDGSRSPDRGREKRREHSREEADRRHHHSXXXXRGGGSGSMDRDYKGPGDGRRRASSRDGDHDGGKERFSPPGRSSRHGGGGYPDAAXXXXX---EGDGGSRIDEPHGRPSNEPGYGDDGGKGGSPESG 1218
            NNRG GRDDGLGVYGPNAPVP+Q QRQGGGRRGSG       D+  RG  T        +GRDR      GGAD RD      XXXXXXXXXXXXX XX        RRGRG SR  GG XXXXXXXXX       P                           RR  G      G   XXXXXXXXXXXX       XXXX           SSRV RHE     XXXX     DRDSRDR       XXXXXXXXXXXX       AHGS            RAAGRRDGSRSPDRGREKRR+HSRE ADRR HHS    RG                                                    XXXXX   + DG SR+DEPH R S+EPGYGD GGKGGSPESG
Sbjct:    4 NNRGGGRDDGLGVYGPNAPVPEQHQRQGGGRRGSGXXXRRGADSRDRGGGT--------NGRDRDVGRMKGGADSRDRENSRRXXXXXXXXXXXXXXXXXXXXXX-XRRGRGGSRDRGGDXXXXXXXXXEELHRNPPPFSGGRSRNSSVNDSD-----------RRGSG------GDGSXXXXXXXXXXXXXXXXXXXXXXXERDGGSGGGAGSSRVDRHEXXXXXXXXXXXXXDDRDSRDRGXXXXXXXXXXXXXXXXXXXXXXRDLAHGSXXXXXXXXXXXXRAAGRRDGSRSPDRGREKRRDHSRE-ADRRQHHSQEGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCDGRSRVDEPHDRASDEPGYGDHGGKGGSPESG 394
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8487.16611.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
C3H1-type8.470e-1762.39domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized7.330e-1247.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8487contigE_fasciculatus_S2_contig8487:761..2715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1728
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_002390.1
Cds size1728
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842507.1684723-CDS-E_fasciculatus_S2_contig8487:760..11021696842507.1684723-CDS-E_fasciculatus_S2_contig8487:760..1102Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8487 761..1102 -
1696842507.1782942-CDS-E_fasciculatus_S2_contig8487:1329..27151696842507.1782942-CDS-E_fasciculatus_S2_contig8487:1329..2715Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8487 1330..2715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8487.16611.1prot_E_fasciculatus_S2_contig8487.16611.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8487 761..2715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8487.16611.1

>prot_E_fasciculatus_S2_contig8487.16611.1 ID=prot_E_fasciculatus_S2_contig8487.16611.1|Name=mRNA_E_fasciculatus_S2_contig8487.16611.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=576bp
MDDNNNNRGRGRDDGLGVYGPNAPVPDQQRQGGGRRGSGGGPNYAEDAVA
RGQATSGGGRRAADGRDRGGGADDRDRDGGRRSGGADSRDREGSRRGGAD
DRDRDSRRGRGDSRDRGGGGRADSRDRRGEEQHRNPPHSSGGRSRNSSVN
DSDRRGSGGDGSSRRSGGGGGAERGRSRDRGHRNRSRERDAEMGRDSGGG
GGGGSGGGGSRDSSRVGRHETRRNSGGGGDRDSRDRRGGGQGRGGDRGDS
RDGRGGGECNRAAHGSSGGDGREDLRAAGRRDGSRSPDRGREKRREHSRE
EADRRHHHSQEQARGGGSGSMDRDYKGPGDGRRRASSRDGDHDGGKERFS
PPGRSSRHGGGGYPDAASGGGGEGDGGSRIDEPHGRPSNEPGYGDDGGKG
GSPESGGGDGGGGGDGGGDGGGGGGGGRKDKKQKKDKKDKKEKKKKKDKD
KDRDSRSKGDGKKDHEEESAAAGIYPSRPPPAAPLPAPPSGDGSARKRAR
SPSPLPYQDDYDNDDDGADVGPSSRKKRNKRSSGSGKHRRKPDGGLDAAE
YSGGGGGGDNGSKTRGVGAKPRVVS*
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mRNA from alignment at E_fasciculatus_S2_contig8487:761..2715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8487.16611.1 ID=mRNA_E_fasciculatus_S2_contig8487.16611.1|Name=mRNA_E_fasciculatus_S2_contig8487.16611.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1955bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8487:761..2715- (Ectocarpus fasciculatus EfasUO2)
ATGGACGACAATAACAACAACAGGGGGAGAGGGAGAGACGATGGGCTTGG
AGTCTACGGCCCGAACGCTCCTGTACCGGACCAGCAGCGGCAAGGGGGGG
GAAGAAGGGGCAGTGGCGGCGGCCCCAACTACGCCGAAGACGCGGTCGCC
CGGGGTCAAGCCACCAGCGGCGGCGGCCGACGCGCGGCAGACGGCAGAGA
CAGGGGCGGTGGCGCTGACGACAGAGACAGGGACGGCGGTAGGAGGAGCG
GCGGGGCGGACAGCAGAGACAGGGAGGGTAGCAGGAGGGGCGGGGCTGAC
GACAGGGACAGGGACAGCAGGAGGGGCAGGGGTGACAGCAGAGACCGGGG
CGGCGGCGGCCGGGCGGACAGCAGAGACAGACGCGGAGAAGAGCAGCACC
GCAACCCTCCCCATTCTTCAGGAGGGAGAAGTCGAAACAGCAGCGTCAAC
GACAGCGACCGCAGGGGTAGCGGCGGGGACGGGTCGAGCAGGCGCAGCGG
CGGAGGAGGAGGAGCAGAGAGAGGGCGCAGCAGAGATCGCGGGCATCGCA
ACCGGAGCCGGGAGCGCGACGCCGAGATGGGCAGGGACTCTGGCGGCGGA
GGAGGCGGCGGCAGCGGCGGCGGTGGCAGCAGGGATAGCAGCCGGGTTGG
CCGCCACGAGACGCGCAGAAACAGCGGCGGCGGCGGCGACAGAGACTCGC
GGGACAGACGCGGCGGCGGGCAGGGTAGAGGAGGGGACCGCGGGGATTCC
AGAGACGGCAGAGGAGGAGGGGAGTGCAACCGTGCTGCCCACGGCAGCAG
CGGCGGGGACGGGCGCGAGGACCTGCGGGCGGCGGGACGGAGGGACGGCA
GCCGCAGCCCGGACCGGGGAAGGGAGAAGCGCCGCGAACACTCGCGGGAA
GAAGCCGATCGCCGCCACCACCACAGCCAAGAACAAGCACGCGGGGGTGG
CAGCGGCAGCATGGACAGAGACTACAAAGGCCCCGGCGATGGCAGGCGGA
GGGCGTCCTCCCGAGACGGCGACCATGACGGGGGCAAAGAGCGCTTCTCC
CCTCCCGGGCGCAGTTCGCGCCACGGTGGTGGGGGATACCCGGATGCCGC
TAGCGGCGGCGGCGGTGAGGGTGATGGTGGAAGCAGGATAGATGAGCCTC
ACGGCAGGCCTTCGAACGAACCGGGGTACGGAGACGACGGCGGGAAGGGT
GGTTCGCCGGAGTCTGGCGGCGGTGACGGTGGCGGCGGCGGTGACGGTGG
CGGTGACGGTGGCGGCGGCGGCGGCGGCGGCAGGAAGGACAAGAAGCAAA
AGAAGGACAAGAAGGACAAGAAAGAGAAAAAGAAGAAGAAAGACAAGGAC
AAGGACAGGGACAGCAGGAGCAAGGGAGACGGGAAGGTGGGATCGATGGA
TCCCTCGTCTTTATTCATTGTCGAGAGCCCTTACAGACCTTTTTACCGCT
TGTGCTTGAGTAACAAACAACCGCCCGTTTCTGTACGTCCCGCCAGAAGA
AGAACAGCGTTGTTGGCAGTGTGTCTTATCCCACGGTTACATTTTCTCCT
GGTGCTGATTGACCCCCGCCCCGACCGCCCTTGCTTCACGGCGCCCTCCC
GCAAACACAACAGAAGGATCACGAGGAAGAGTCGGCGGCGGCGGGCATTT
ACCCCTCCCGGCCACCGCCGGCGGCCCCGCTCCCCGCACCGCCCAGCGGC
GATGGTTCCGCGCGAAAGAGGGCCCGGTCCCCTTCTCCCCTCCCGTACCA
GGACGACTACGATAACGACGACGACGGCGCCGATGTCGGGCCATCGTCGA
GAAAGAAGCGGAACAAACGCAGCAGCGGCAGCGGCAAGCACCGCAGGAAG
CCTGACGGTGGCTTAGACGCCGCAGAGTATTCTGGTGGCGGCGGCGGGGG
TGACAACGGGTCCAAGACCCGTGGCGTCGGGGCGAAGCCTCGTGTGGTGA
GTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8487:761..2715-

>mRNA_E_fasciculatus_S2_contig8487.16611.1 ID=mRNA_E_fasciculatus_S2_contig8487.16611.1|Name=mRNA_E_fasciculatus_S2_contig8487.16611.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1728bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8487:761..2715- (Ectocarpus fasciculatus EfasUO2)
ATGGACGACAATAACAACAACAGGGGGAGAGGGAGAGACGATGGGCTTGG
AGTCTACGGCCCGAACGCTCCTGTACCGGACCAGCAGCGGCAAGGGGGGG
GAAGAAGGGGCAGTGGCGGCGGCCCCAACTACGCCGAAGACGCGGTCGCC
CGGGGTCAAGCCACCAGCGGCGGCGGCCGACGCGCGGCAGACGGCAGAGA
CAGGGGCGGTGGCGCTGACGACAGAGACAGGGACGGCGGTAGGAGGAGCG
GCGGGGCGGACAGCAGAGACAGGGAGGGTAGCAGGAGGGGCGGGGCTGAC
GACAGGGACAGGGACAGCAGGAGGGGCAGGGGTGACAGCAGAGACCGGGG
CGGCGGCGGCCGGGCGGACAGCAGAGACAGACGCGGAGAAGAGCAGCACC
GCAACCCTCCCCATTCTTCAGGAGGGAGAAGTCGAAACAGCAGCGTCAAC
GACAGCGACCGCAGGGGTAGCGGCGGGGACGGGTCGAGCAGGCGCAGCGG
CGGAGGAGGAGGAGCAGAGAGAGGGCGCAGCAGAGATCGCGGGCATCGCA
ACCGGAGCCGGGAGCGCGACGCCGAGATGGGCAGGGACTCTGGCGGCGGA
GGAGGCGGCGGCAGCGGCGGCGGTGGCAGCAGGGATAGCAGCCGGGTTGG
CCGCCACGAGACGCGCAGAAACAGCGGCGGCGGCGGCGACAGAGACTCGC
GGGACAGACGCGGCGGCGGGCAGGGTAGAGGAGGGGACCGCGGGGATTCC
AGAGACGGCAGAGGAGGAGGGGAGTGCAACCGTGCTGCCCACGGCAGCAG
CGGCGGGGACGGGCGCGAGGACCTGCGGGCGGCGGGACGGAGGGACGGCA
GCCGCAGCCCGGACCGGGGAAGGGAGAAGCGCCGCGAACACTCGCGGGAA
GAAGCCGATCGCCGCCACCACCACAGCCAAGAACAAGCACGCGGGGGTGG
CAGCGGCAGCATGGACAGAGACTACAAAGGCCCCGGCGATGGCAGGCGGA
GGGCGTCCTCCCGAGACGGCGACCATGACGGGGGCAAAGAGCGCTTCTCC
CCTCCCGGGCGCAGTTCGCGCCACGGTGGTGGGGGATACCCGGATGCCGC
TAGCGGCGGCGGCGGTGAGGGTGATGGTGGAAGCAGGATAGATGAGCCTC
ACGGCAGGCCTTCGAACGAACCGGGGTACGGAGACGACGGCGGGAAGGGT
GGTTCGCCGGAGTCTGGCGGCGGTGACGGTGGCGGCGGCGGTGACGGTGG
CGGTGACGGTGGCGGCGGCGGCGGCGGCGGCAGGAAGGACAAGAAGCAAA
AGAAGGACAAGAAGGACAAGAAAGAGAAAAAGAAGAAGAAAGACAAGGAC
AAGGACAGGGACAGCAGGAGCAAGGGAGACGGGAAGAAGGATCACGAGGA
AGAGTCGGCGGCGGCGGGCATTTACCCCTCCCGGCCACCGCCGGCGGCCC
CGCTCCCCGCACCGCCCAGCGGCGATGGTTCCGCGCGAAAGAGGGCCCGG
TCCCCTTCTCCCCTCCCGTACCAGGACGACTACGATAACGACGACGACGG
CGCCGATGTCGGGCCATCGTCGAGAAAGAAGCGGAACAAACGCAGCAGCG
GCAGCGGCAAGCACCGCAGGAAGCCTGACGGTGGCTTAGACGCCGCAGAG
TATTCTGGTGGCGGCGGCGGGGGTGACAACGGGTCCAAGACCCGTGGCGT
CGGGGCGAAGCCTCGTGTGGTGAGTTGA
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