prot_E_fasciculatus_S2_contig8481.16608.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig8481.16608.1
Unique Nameprot_E_fasciculatus_S2_contig8481.16608.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length68
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.600e-38
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRG 65
            +VTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRG
Sbjct:   44 KVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRG 108          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.520e-20
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGA 53
            +VTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDDAPK KPG  K GA
Sbjct:   44 KVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAGA 96          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.760e-19
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRG 59
            +VT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDDAPKQK  KV  G RG GRG
Sbjct:   65 KVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPGRG 123          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 81.3 bits (199), Expect = 2.380e-18
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 45
            ++T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDD PKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.230e-18
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARG 55
            ++T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDD PK KP KV+ G  G
Sbjct:   66 KLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTGMSG 120          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.670e-17
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 45
            ++T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 88          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A397E2M2_9STRA (Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397E2M2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.850e-16
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 45
            ++T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   75 KMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 119          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: W7T3T7_9STRA (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3T7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.930e-16
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRG 59
            +VT KGKNP +Y+SLSIRGNNIR YILPD LNLD LL+DD PK K   +K GA+  GRG
Sbjct:   44 KVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNK---LKPGAQAGGRG 99          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A8H7PW34_MORIS (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PW34_MORIS)

HSP 1 Score: 76.6 bits (187), Expect = 2.030e-16
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGA----RGRGRGMRGG 63
            ++T K K+P   +SLSIRGNNIR +ILPD+L LD LLIDD+PK K GK KD A    RGRGRGMRGG
Sbjct:   47 KMTVKNKDPVNLESLSIRGNNIRHFILPDSLPLDTLLIDDSPKSK-GKKKDAAGPPGRGRGRGMRGG 112          
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Match: A0A0C9STN8_PAXIN (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Boletales TaxID=68889 RepID=A0A0C9STN8_PAXIN)

HSP 1 Score: 76.6 bits (187), Expect = 2.240e-16
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRGG 66
            ++T + ++PT+ DSLSIRGNNIR +ILPD L LD LL+DDAPK K G+ KD ARGRG G+RG RGG
Sbjct:   44 KMTARNRDPTSLDSLSIRGNNIRYFILPDALPLDTLLVDDAPKPK-GRKKDDARGRG-GLRGARGG 107          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE7.600e-3898.46Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A835YYQ8_9STRA1.520e-2077.36Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
A0A7S2FU32_9STRA2.760e-1971.19Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
T0RK40_SAPDV2.380e-1882.22Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
A0A7S2SJR6_9STRA6.230e-1872.73Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]
A0A024TLD1_9STRA8.670e-1780.00Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]
A0A397E2M2_9STRA1.850e-1680.00Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Apha... [more]
W7T3T7_9STRA1.930e-1667.80Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nann... [more]
A0A8H7PW34_MORIS2.030e-1665.67Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Mort... [more]
A0A0C9STN8_PAXIN2.240e-1665.15Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Bole... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..39
e-value: 1.7E-10
score: 42.8
NoneNo IPR availablePANTHERPTHR23338:SF32SMALL NUCLEAR RIBONUCLEOPROTEIN SMD1Acoord: 2..67
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..67
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8481contigE_fasciculatus_S2_contig8481:1101..1304 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8481.16608.1mRNA_E_fasciculatus_S2_contig8481.16608.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig8481 1101..1304 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig8481.16608.1 ID=prot_E_fasciculatus_S2_contig8481.16608.1|Name=mRNA_E_fasciculatus_S2_contig8481.16608.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVK
DGARGRGRGMRGGRGGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR027141LSm4/Sm_D1/D3