mRNA_E_fasciculatus_S2_contig8481.16608.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8481.16608.1
Unique NamemRNA_E_fasciculatus_S2_contig8481.16608.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.600e-38
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRG 195
            +VTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRG
Sbjct:   44 KVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRG 108
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BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.520e-20
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGA 159
            +VTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDDAPK KPG  K GA
Sbjct:   44 KVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAGA 96
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BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.760e-19
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRG 177
            +VT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDDAPKQK  KV  G RG GRG
Sbjct:   65 KVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPGRG 123
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BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 81.3 bits (199), Expect = 2.380e-18
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 135
            ++T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDD PKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88
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BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.230e-18
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARG 165
            ++T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDD PK KP KV+ G  G
Sbjct:   66 KLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTGMSG 120
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BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.670e-17
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 135
            ++T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 88
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397E2M2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.850e-16
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 135
            ++T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   75 KMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 119
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3T7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.930e-16
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRG 177
            +VT KGKNP +Y+SLSIRGNNIR YILPD LNLD LL+DD PK K   +K GA+  GRG
Sbjct:   44 KVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNK---LKPGAQAGGRG 99
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PW34_MORIS)

HSP 1 Score: 76.6 bits (187), Expect = 2.030e-16
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGA----RGRGRGMRGG 189
            ++T K K+P   +SLSIRGNNIR +ILPD+L LD LLIDD+PK K GK KD A    RGRGRGMRGG
Sbjct:   47 KMTVKNKDPVNLESLSIRGNNIRHFILPDSLPLDTLLIDDSPKSK-GKKKDAAGPPGRGRGRGMRGG 112
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D1 n=3 Tax=Boletales TaxID=68889 RepID=A0A0C9STN8_PAXIN)

HSP 1 Score: 76.6 bits (187), Expect = 2.240e-16
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGMRGGRGG 198
            ++T + ++PT+ DSLSIRGNNIR +ILPD L LD LL+DDAPK K G+ KD ARGRG G+RG RGG
Sbjct:   44 KMTARNRDPTSLDSLSIRGNNIRYFILPDALPLDTLLVDDAPKPK-GRKKDDARGRG-GLRGARGG 107
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8481.16608.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Small7.600e-3898.46nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus... [more]
Small1.520e-2077.36nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema ... [more]
Small2.760e-1971.19nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax... [more]
Small2.380e-1882.22nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegni... [more]
Small6.230e-1872.73nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochrom... [more]
Small8.670e-1780.00nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyce... [more]
Small1.850e-1680.00nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyce... [more]
Small1.930e-1667.80nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochlor... [more]
Small2.030e-1665.67nuclear ribonucleoprotein Sm D1 n=1 Tax=Mortierell... [more]
Small2.240e-1665.15nuclear ribonucleoprotein Sm D1 n=3 Tax=Boletales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8481contigE_fasciculatus_S2_contig8481:1101..1304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.8
Seed ortholog evalue5e-25
Seed eggNOG ortholog2880.D7FT15
Preferred nameSNRPD1
Model size204
KEGG rclassRC00046,RC00150,RC00180
KEGG koko:K00505,ko:K10645,ko:K11087
KEGG ReactionR00731,R02078,R02363,R02383,R04693,R04884
KEGG Pathwayko00350,ko00950,ko00965,ko01100,ko01110,ko03040,ko04916,ko05322,map00350,map00950,map00965,map01100,map01110,map03040,map04916,map05322
KEGG ModuleM00042,M00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031047,GO:0031090,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035194,GO:0035770,GO:0036464,GO:0040029,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0048519,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060293,GO:0065003,GO:0065007,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098588,GO:0098805,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons1
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG3428@2759
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D1
Ec32 orthologEc-24_004450.1
EC1.14.18.1,2.3.2.27
Cds size204
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.911935-CDS-E_fasciculatus_S2_contig8481:1100..13041696842506.911935-CDS-E_fasciculatus_S2_contig8481:1100..1304Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8481 1101..1304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8481.16608.1prot_E_fasciculatus_S2_contig8481.16608.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8481 1101..1304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8481.16608.1

>prot_E_fasciculatus_S2_contig8481.16608.1 ID=prot_E_fasciculatus_S2_contig8481.16608.1|Name=mRNA_E_fasciculatus_S2_contig8481.16608.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVK
DGARGRGRGMRGGRGGRG
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mRNA from alignment at E_fasciculatus_S2_contig8481:1101..1304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8481.16608.1 ID=mRNA_E_fasciculatus_S2_contig8481.16608.1|Name=mRNA_E_fasciculatus_S2_contig8481.16608.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8481:1101..1304+ (Ectocarpus fasciculatus EfasUO2)
CAGGTAACCCCCAAGGGCAAGAACCCGACCACATATGACAGCCTCTCCAT
CAGAGGAAACAACATCCGCTGCTACATCCTCCCGGATAACCTCAACCTGG
ACCAGCTGCTCATCGACGACGCGCCCAAGCAAAAGCCCGGGAAGGTCAAG
GACGGCGCGAGGGGGCGCGGAAGGGGGATGCGAGGGGGCAGGGGGGGTAG
AGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8481:1101..1304+

>mRNA_E_fasciculatus_S2_contig8481.16608.1 ID=mRNA_E_fasciculatus_S2_contig8481.16608.1|Name=mRNA_E_fasciculatus_S2_contig8481.16608.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8481:1101..1304+ (Ectocarpus fasciculatus EfasUO2)
CAGGTAACCCCCAAGGGCAAGAACCCGACCACATATGACAGCCTCTCCAT
CAGAGGAAACAACATCCGCTGCTACATCCTCCCGGATAACCTCAACCTGG
ACCAGCTGCTCATCGACGACGCGCCCAAGCAAAAGCCCGGGAAGGTCAAG
GACGGCGCGAGGGGGCGCGGAAGGGGGATGCGAGGGGGCAGGGGGGGTAG
AGGT
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