mRNA_E_fasciculatus_S2_contig848.16606.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig848.16606.1
Unique NamemRNA_E_fasciculatus_S2_contig848.16606.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L631_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.970e-27
Identity = 61/84 (72.62%), Postives = 63/84 (75.00%), Query Frame = 2 
Query: 1130 LTSTAAPSPPQTKQ*TSAVAPASSPGLEGLLPAVQQCNIALSGRMGGREKMAWWGPRCTFTVRPADTVQCFTRAMSISWGKAGN 1381
            LTSTAAPSPPQ     S  APASS GLE LLP VQ  + ALS  MG RE+MAW GPR T TVRPA TVQCFTR MSISWGKAGN
Sbjct:    2 LTSTAAPSPPQPNHLMSTAAPASSTGLEDLLPTVQSSSKALSAPMGKRERMAWSGPRYTSTVRPAGTVQCFTRTMSISWGKAGN 85
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: Carboxyl (ester lipase (Bile salt-stimulated lipase), isoform CRA_b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU80_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.370e-26
Identity = 65/73 (89.04%), Postives = 65/73 (89.04%), Query Frame = -3 
Query: 1662 SSNQHISHQVVTASSAVSFKASKPDQNVRKSSLRASTEPWSSNIGAASRPCPPLASSIPLLSPSLA*AGAANG 1880
            SSNQHISHQ VTASSAVSFKASKPDQNVRKSSLRAS EPWSSN  AASRP PPL SSIPLLSPSLA AGAA G
Sbjct:  109 SSNQHISHQAVTASSAVSFKASKPDQNVRKSSLRASMEPWSSNTRAASRPFPPLESSIPLLSPSLARAGAATG 181
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: C2H2 (zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU81_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 6.360e-25
Identity = 53/68 (77.94%), Postives = 55/68 (80.88%), Query Frame = 2 
Query: 1178 SAVAPASSPGLEGLLPAVQQCNIALSGRMGGREKMAWWGPRCTFTVRPADTVQCFTRAMSISWGKAGN 1381
            S  APASS GLEGLLP VQ  +IALSGRMG RE+MAW GPR TFTVRPA T QC TR MSISWGKAGN
Sbjct:    2 STAAPASSTGLEGLLPTVQSSSIALSGRMGRRERMAWSGPRYTFTVRPAGTAQCVTRTMSISWGKAGN 69
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: hypothetical (protein n=1 Tax=Pseudoalteromonas sp. SMS1 TaxID=2908894 RepID=UPI001F473877)

HSP 1 Score: 65.9 bits (159), Expect = 2.890e-9
Identity = 38/120 (31.67%), Postives = 51/120 (42.50%), Query Frame = 1 
Query: 1303 HIHGPACGHRAVLHEGHVDFLGEGGQLECYAGKEKTGDWVSTTKEGGXXXXXXCGCDNSSKKKESNGPGEPTNALVHWDGVRLDQPRGRCEGINHGPQCGHDVVHHNGHLDYVVKGRLIH 1662
            H+HGP CGH A+ H GH+D+L +G +L    G                       CD  + +     P +  +A V  D V             HGP CGH+ + H  H DY+V GRL H
Sbjct:   12 HVHGPNCGHTAINHNGHIDYLVDG-KLHHPHGDH---------------------CDEHAIEVSDTNPNQCNHANVEKDHV-------------HGPGCGHEAIQHGDHTDYIVNGRLEH 96
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mesorhizobium soli TaxID=1295366 RepID=A0A2P7RVL7_9HYPH)

HSP 1 Score: 64.7 bits (156), Expect = 8.610e-9
Identity = 40/126 (31.75%), Postives = 52/126 (41.27%), Query Frame = 1 
Query: 1294 AKVHIHGPACGHRAVLHEGHVDFLGEGGQLECYAGKEKTGDWVSTTKEGGXXXXXXCGCDNSSKKKESNGPGEPTNALVHWDGVRLDQPRGRCEGIN---HGPQCGHDVVHHNGHLDYVVKGRLIH 1662
            A+ H HGP CGH A+ H GH+D+L +G  LE   GK      +  + +                         P              P  RC G     HGP CGH+ V H  H+DY+V+GRL H
Sbjct:    8 AEPHRHGPGCGHTAIRHHGHLDYLRDG-HLEHPHGKSNDEHVIEVSDQ------------------------NPDRC----------SPEHRCTGAAGHVHGPGCGHEAVPHGDHVDYIVEGRLQH 98
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vibrio chagasii TaxID=170679 RepID=A0A7Y3YNW4_9VIBR)

HSP 1 Score: 63.9 bits (154), Expect = 1.370e-8
Identity = 42/135 (31.11%), Postives = 53/135 (39.26%), Query Frame = 1 
Query: 1303 HIHGPACGHRAVLHEGHVDFLGEGGQLECYAGKEKTGDWVSTTKEGGXXXXXXCGCDNSSKKKESNGPGEPTNALVHWDGVRLDQPRGRCEGINHGPQCGHDVVHHNGHLDYVVKGRLIHPLAAPAHANDGDSNG 1707
            HIHGP CGH A+ H GH D+L +G +L    G                       CD    +     P E              +P   C    HGP CGH+ + H  H+DY+V GRL H      H N  D +G
Sbjct:   12 HIHGPGCGHTAIRHSGHTDYLVDG-KLHHPHGDH---------------------CDEHVVEYSDVNPNEC-------------KPIHSCGEHVHGPNCGHEAIQHGDHIDYIVDGRLHHQ-----HGNHCDDHG 106
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: hypothetical (protein n=2 Tax=Photobacterium TaxID=657 RepID=UPI0009FC37CE)

HSP 1 Score: 63.9 bits (154), Expect = 1.520e-8
Identity = 39/120 (32.50%), Postives = 50/120 (41.67%), Query Frame = 1 
Query: 1303 HIHGPACGHRAVLHEGHVDFLGEGGQLECYAGKEKTGDWVSTTKEGGXXXXXXCGCDNSSKKKESNGPGEPTNALVHWDGVRLDQPRGRCEGINHGPQCGHDVVHHNGHLDYVVKGRLIH 1662
            H+HGP CGH A+ H GHVD++ +G     +      GD                 CD        + P E  +A               CE   HGP CGH+ V H  H+DY+V GRL H
Sbjct:   12 HVHGPDCGHTAIRHGGHVDYIVDGVLHHPH------GDH----------------CDEHVIDVSESNPNECNSAYS-------------CEEHIHGPGCGHEAVKHGDHIDYIVDGRLHH 96
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pseudoalteromonas luteoviolacea TaxID=43657 RepID=A0A166VWB3_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-8
Identity = 41/135 (30.37%), Postives = 56/135 (41.48%), Query Frame = 1 
Query: 1303 HIHGPACGHRAVLHEGHVDFLGEGGQLECYAGKEKTGDWVSTTKEGGXXXXXXCGCDNSSKKKESNGPGEPTNALVHWDGVRLDQPRGRCEGINHGPQCGHDVVHHNGHLDYVVKGRLIHPLAAPAHANDGDSNG 1707
            H+HGP CGH AV H+GH+D+L +G +L    G                       CD    +   + P +   A +               G  HGP CGH+ + H  H+DY+V GRL H      H N  D +G
Sbjct:   12 HVHGPNCGHTAVRHKGHIDYLVDG-KLHHPHGDH---------------------CDEHIFEVSDSNPQQCNKAHLG-------------NGHVHGPGCGHEAIQHGDHIDYIVDGRLEHQ-----HGNHCDDHG 106
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: Uncharacterized (protein n=3 Tax=Marinomonas TaxID=28253 RepID=A3YDS0_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-8
Identity = 37/120 (30.83%), Postives = 49/120 (40.83%), Query Frame = 1 
Query: 1303 HIHGPACGHRAVLHEGHVDFLGEGGQLECYAGKEKTGDWVSTTKEGGXXXXXXCGCDNSSKKKESNGPGEPTNALVHWDGVRLDQPRGRCEGINHGPQCGHDVVHHNGHLDYVVKGRLIH 1662
            H+HGP CGH A+ H  H+D+L +G +L    G    G  +  +                            TNA +         P   C G  HGP CGH+ + H  H DY+V GRL H
Sbjct:   12 HVHGPNCGHTAIKHGNHIDYLVDG-ELHHPHGDHCDGHVIELSD---------------------------TNADIC-------NPVNTCGGHTHGPDCGHEAIKHGDHTDYIVDGRLHH 96
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7C4BV65_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 2.190e-8
Identity = 40/125 (32.00%), Postives = 50/125 (40.00%), Query Frame = 1 
Query: 1294 AKVHIHGPACGHRAVLHEGHVDFLGEGGQLECYAGK-EKTGDWVSTTKEGGXXXXXXCGCDNSSKKKESNGPGEPTNALVHWDGVRLDQPRGRCEGINHGPQCGHDVVHHNGHLDYVVKGRLIHP 1665
            A  HIHGP CGH+AVLH  HVD+L +G          ++    VS    G       CG              EP +                     HGP CGH+ + H  H+DY+V G L HP
Sbjct:   10 AHAHIHGPGCGHKAVLHGDHVDYLHDGXXXXXXXXXXDEHAIEVSARNPGVCTPQHACGAH------------EPAHV--------------------HGPGCGHEAIPHGDHVDYLVAGHLHHP 102
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig848.16606.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.970e-2772.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Carboxyl1.370e-2689.04ester lipase (Bile salt-stimulated lipase), isofor... [more]
C2H26.360e-2577.94zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
hypothetical2.890e-931.67protein n=1 Tax=Pseudoalteromonas sp. SMS1 TaxID=2... [more]
Uncharacterized8.610e-931.75protein n=1 Tax=Mesorhizobium soli TaxID=1295366 R... [more]
Uncharacterized1.370e-831.11protein n=1 Tax=Vibrio chagasii TaxID=170679 RepID... [more]
hypothetical1.520e-832.50protein n=2 Tax=Photobacterium TaxID=657 RepID=UPI... [more]
Uncharacterized1.870e-830.37protein n=2 Tax=Pseudoalteromonas luteoviolacea Ta... [more]
Uncharacterized1.870e-830.83protein n=3 Tax=Marinomonas TaxID=28253 RepID=A3YD... [more]
Uncharacterized2.190e-832.00protein n=1 Tax=Bryobacteraceae bacterium TaxID=22... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig848contigE_fasciculatus_S2_contig848:3498..7143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score62.4
Seed ortholog evalue8.8e-07
Seed eggNOG ortholog314292.VAS14_10674
Model size3049
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs1RJJR@1224,1SA2M@1236,1Y37M@135623,2D5VR@1,32TJX@2
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-14_003990.1
Cds size1896
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.6609902-UTR-E_fasciculatus_S2_contig848:3497..36621696842506.6609902-UTR-E_fasciculatus_S2_contig848:3497..3662Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig848 3498..3662 +
1696842506.7203803-UTR-E_fasciculatus_S2_contig848:6155..71431696842506.7203803-UTR-E_fasciculatus_S2_contig848:6155..7143Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig848 6156..7143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.6841037-CDS-E_fasciculatus_S2_contig848:3662..49011696842506.6841037-CDS-E_fasciculatus_S2_contig848:3662..4901Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig848 3663..4901 +
1696842506.7002113-CDS-E_fasciculatus_S2_contig848:5299..55031696842506.7002113-CDS-E_fasciculatus_S2_contig848:5299..5503Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig848 5300..5503 +
1696842506.7103574-CDS-E_fasciculatus_S2_contig848:5702..61551696842506.7103574-CDS-E_fasciculatus_S2_contig848:5702..6155Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig848 5703..6155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig848.16606.1prot_E_fasciculatus_S2_contig848.16606.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig848 3663..6155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig848.16606.1

>prot_E_fasciculatus_S2_contig848.16606.1 ID=prot_E_fasciculatus_S2_contig848.16606.1|Name=mRNA_E_fasciculatus_S2_contig848.16606.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=632bp
MNIHQQPSSSSKKRKNPPSTRSDTDASASGGTTSNRTMSSGGAKRRRATV
VAPTRATVEVKASNPLVQVEKQPNRIAVESNRPLPCNAAEASDSPLSNGL
AFAIQQQLQKQPQWQQYQKWQQQQQQQQEQQQEQQQPQQQQPQQLQPGPQ
PKQQQQQQQHDQQQPQQQQRQQQQQQHKDQQQQQQQQQQQQQQQSQHQPQ
PQQPHPQQKLPPPPQQQQQPPPPPPQQQQPPPPPPQQQQQPPPPQQQPPP
PPPQPQQKPQQQPQQQPQLLTNTEILDLVGSSSLPPLPKLPLSASVPPGS
LHTKSVALPHRRYHRKRMRCDAHKHCGAIPASNEAIDFRGSASVITGPGG
SAAGGSTMQHSAERPHGRARKDGLVGAKVHIHGPACGHRAVLHEGHVDFL
GEGGQLECYAGKEKTGDWVSTTKEGGGGSAASCGCDNSSKKKESNGPGEP
TNALVHWDGVRLDQPRGRCEGINHGPQCGHDVVHHNGHLDYVVKGRLIHP
LAAPAHANDGDSNGIDDASGGQGREAAPMFEDHGSVEALNDDFLTFWSGL
DALNETADEAVTTWCDMCWLDESTPSTAAGPAGAGPPSASGTADGKPPST
SGAADGKPHSAPVAASPQSGAASPQTESVKI*
back to top

mRNA from alignment at E_fasciculatus_S2_contig848:3498..7143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig848.16606.1 ID=mRNA_E_fasciculatus_S2_contig848.16606.1|Name=mRNA_E_fasciculatus_S2_contig848.16606.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3646bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig848:3498..7143+ (Ectocarpus fasciculatus EfasUO2)
GGTGAAAAGCCGTACGCGTGTGTGCACCCGCTTTGCGGAAGGAAGTTCGC
GCGGATAAGCGATCTGCGGTCCCATGAGCGCACTCACAGTGCCAACGCTA
AATCCTTCGAGTGTAAACAATGCGGGAAACGCTTCACTCGCCCGTACGAT
CTCAAGAAACACATCATGAACATTCACCAGCAGCCATCATCGTCGTCGAA
AAAGAGAAAGAATCCGCCATCGACGAGGAGTGATACGGATGCCTCCGCCT
CTGGCGGCACGACCTCTAACCGCACGATGAGCAGCGGTGGAGCAAAGCGA
CGGCGGGCCACAGTGGTAGCTCCAACGAGGGCAACCGTGGAGGTCAAGGC
CTCTAATCCGCTTGTCCAAGTGGAAAAGCAGCCGAATCGTATCGCCGTGG
AGTCAAACCGGCCGCTGCCATGCAACGCCGCCGAAGCCTCCGACAGCCCA
CTGTCCAACGGGTTGGCTTTTGCCATCCAGCAACAGCTTCAAAAGCAACC
GCAATGGCAACAATACCAGAAGTGGCAGCAGCAGCAGCAGCAGCAGCAGG
AGCAGCAGCAGGAGCAGCAGCAACCCCAGCAGCAGCAGCCCCAGCAGCTG
CAACCGGGGCCCCAGCCCAAGCAGCAACAGCAGCAGCAGCAGCACGATCA
ACAGCAACCGCAGCAGCAACAACGGCAGCAACAGCAGCAGCAGCATAAGG
ATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAATCG
CAGCATCAACCGCAACCGCAGCAACCGCACCCGCAGCAGAAGTTGCCGCC
GCCGCCGCAGCAACAGCAGCAACCGCCGCCGCCGCCGCCGCAACAGCAGC
AACCGCCTCCGCCGCCGCCGCAGCAGCAGCAACAGCCGCCGCCGCCGCAG
CAGCAACCGCCGCCGCCGCCGCCGCAGCCGCAGCAGAAACCGCAGCAGCA
ACCGCAGCAGCAGCCGCAGCTGCTGACGAACACCGAAATCCTCGACCTTG
TTGGTAGCTCTTCGTTGCCTCCGCTACCGAAACTGCCGCTATCAGCTTCG
GTGCCGCCGGGTTCTCTACACACAAAGTCCGTAGCATTACCGCACCGGCG
CTACCATCGCAAACGCATGCGATGTGACGCTCACAAGCACTGCGGCGCCA
TCCCCGCCTCAAACGAAGCAATAGACTTCCGCGGTAGCGCCAGCGTCATC
ACCGGGCCTGGAGGGTCTGCTGCCGGCGGTTCAACAATGCAACATAGCGC
TGAGCGGCCGCATGGGCGGGCGAGAAAAGATGGCCTGGTGGGGGCCAAGG
TGCACATTCACGGTCCGGCCTGCGGACACCGTGCAGTGCTTCACGAGGGC
CATGTCGATTTCTTGGGGGAAGGCGGGCAATTAGAGTGCTACGCCGGGAA
AGAGGTGCGACGCTATTCCGTTCCAACACTTCACATGCTGCGGCGTGCAT
TCGTGTATTTTCGTATTCTCGTAGACCTGGAGTACAGGCAAATTGCGTTG
GGAGAATCGTGAACCATCTGGTTTCATGAGGAAGCCAAACTCGCCGCCAA
CAGTTGCAGAAAACGAAAGATAACCCACTGAAAAGGAGCGTGGTTTGTGG
CGTGTGGCCTATAAAGTAATTGCGCCACCAACTGCTGTAGTACTTAGCTG
TTCCTGCAGTGTGTCTCCCGGGTGAGAGACGTTCGGAGTCATGTCCCGGT
TGGTAGTGAACGCCCCGCCGCGATGCCCTTTTGCTTGTCCCGTGCACGCT
TTTGCCTCTATTCACATCACCTGACCCCCTCATCCGCGTCGTCTTTGGAC
AGAAAACTGGCGACTGGGTGAGCACTACCAAGGAGGGCGGTGGAGGGTCT
GCCGCTAGCTGTGGGTGCGATAATTCTTCCAAGAAGAAGGAATCGAATGG
TCCGGGCGAGCCGACGAACGCCCTCGTTCATTGGGACGGCGTGCGACTTG
ACCAACCACGAGGCCGTTGTGAGGGCATCAACCACGGGCCGCAATGCGGT
CACGATGTGCGTGCCAGCGGCAGCAGTAGCAACAACGGGAGCCCCACCAC
TATCGCATCGTCTTGCTTCGTTGCGTCCGGTGCCTTCTCCGAGCGTTAGA
TTTGCCCTTGTGTCGTGTCTGTCCTACAAAACAAAGTTGACAAGTCACCT
TCCCCTGAGAAGACTTGAGATTAACAGTTTGAAATGTCTGCCCGTGTCTT
TGCAGGTCGTTCATCACAATGGTCACTTGGACTACGTTGTGAAAGGGCGG
CTCATTCATCCATTAGCAGCACCAGCTCATGCTAATGATGGCGACAGCAA
TGGGATCGACGACGCTAGCGGAGGGCAGGGTCGTGAGGCTGCCCCAATGT
TCGAAGACCACGGCTCCGTAGAAGCTCTCAATGACGATTTCCTTACGTTT
TGGTCGGGCTTAGACGCCTTGAACGAGACAGCCGACGAAGCGGTGACCAC
CTGGTGCGATATGTGCTGGTTGGACGAATCGACCCCCTCGACTGCTGCCG
GGCCAGCTGGTGCAGGTCCCCCGTCTGCTTCAGGAACAGCTGATGGCAAA
CCCCCATCTACTTCAGGAGCAGCTGATGGGAAACCCCATTCTGCTCCCGT
AGCTGCTTCTCCACAAAGCGGAGCTGCTTCTCCACAAACCGAATCTGTGA
AGATCTGATTGTGTACTCTTTCCGCGCTCCCTCTACGCTGCTAAAACGTA
GGAGTCTTTCTCTGTACTGCAGCCCTCTATCGTGCAAGGAAAGGCTCCCC
AGAGGCTGGTGCTCTGTTGCATTTGACACGATTCGGGAGTTGCTCTTGTG
AGCGAGAAGCAAGTTTACGGGCAATGATCTACTTGTGTGGCAACCATGAC
TTGGGTTTTCGTGGCGATGGGAGAAAGAAAGGTGTAATGTGCCGTAATAG
CTCTTGGTCTGGCGAATGTTTTCAGAGTGCAACAGGCCGCCTTCCCGAGC
AGTATGGCCGGCGACAGATGAACGGACAAAGCGTAAAGATGGCTGAGGTG
GTGGTGTTTTGGGACGACTTCGGTGATGGCCGACTAGGGTATTATATTTT
CGTTCCGGTGGGCACGCGGGACTCAAGATTTTGAAAATGTCAGCTATGGG
ATTGGCACACACGGTCAGTGACAAGGGGTACGGAGTATTGATGTAAGCAG
CGGTGCCCTCGCCCCGTACGGCATACATTTTTGGAATATGGTTTGCCTAG
CCGCTTGGCAGTCACCGCTAGTGGGGTAGTTGCGGGAATGACTTTCGGTG
ACGTCCGGCGAGTGCGGATCGCAGAATATTCCTGGCGTACGTATATGCAT
ATGCAAGGCTCCCCTTCGGGAGCTAGGTGGCTTGCCTCCCGGGGGCGACG
CAAGAAAGAGGACATCGCCAATGTAATCGTGGTCGCATCGTTGCTCGTTA
CATCTCAACGCCAGACGTGCGGTGGTGCCGGTTTCGCGTACAACCCGCAG
AATTTGCCTGGAATTTGCGTTGTCATGTGCAACCTGTGGGGTAGTTCTTA
TCTCGTCGTGATTTTTCGCATGTGCGTGTGCGTTTTGGCTAGTGGCGTCT
TTGCTGCAGGTCCTACTGCTTGCTGTATAATCCGCCTCGATTATTTACGC
ACATGGTCTGTGGGACATGCAACATGTGTGCGTTGCGCATAGTTGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig848:3498..7143+

>mRNA_E_fasciculatus_S2_contig848.16606.1 ID=mRNA_E_fasciculatus_S2_contig848.16606.1|Name=mRNA_E_fasciculatus_S2_contig848.16606.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1896bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig848:3498..7143+ (Ectocarpus fasciculatus EfasUO2)
ATGAACATTCACCAGCAGCCATCATCGTCGTCGAAAAAGAGAAAGAATCC
GCCATCGACGAGGAGTGATACGGATGCCTCCGCCTCTGGCGGCACGACCT
CTAACCGCACGATGAGCAGCGGTGGAGCAAAGCGACGGCGGGCCACAGTG
GTAGCTCCAACGAGGGCAACCGTGGAGGTCAAGGCCTCTAATCCGCTTGT
CCAAGTGGAAAAGCAGCCGAATCGTATCGCCGTGGAGTCAAACCGGCCGC
TGCCATGCAACGCCGCCGAAGCCTCCGACAGCCCACTGTCCAACGGGTTG
GCTTTTGCCATCCAGCAACAGCTTCAAAAGCAACCGCAATGGCAACAATA
CCAGAAGTGGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGGAGC
AGCAGCAACCCCAGCAGCAGCAGCCCCAGCAGCTGCAACCGGGGCCCCAG
CCCAAGCAGCAACAGCAGCAGCAGCAGCACGATCAACAGCAACCGCAGCA
GCAACAACGGCAGCAACAGCAGCAGCAGCATAAGGATCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAATCGCAGCATCAACCGCAA
CCGCAGCAACCGCACCCGCAGCAGAAGTTGCCGCCGCCGCCGCAGCAACA
GCAGCAACCGCCGCCGCCGCCGCCGCAACAGCAGCAACCGCCTCCGCCGC
CGCCGCAGCAGCAGCAACAGCCGCCGCCGCCGCAGCAGCAACCGCCGCCG
CCGCCGCCGCAGCCGCAGCAGAAACCGCAGCAGCAACCGCAGCAGCAGCC
GCAGCTGCTGACGAACACCGAAATCCTCGACCTTGTTGGTAGCTCTTCGT
TGCCTCCGCTACCGAAACTGCCGCTATCAGCTTCGGTGCCGCCGGGTTCT
CTACACACAAAGTCCGTAGCATTACCGCACCGGCGCTACCATCGCAAACG
CATGCGATGTGACGCTCACAAGCACTGCGGCGCCATCCCCGCCTCAAACG
AAGCAATAGACTTCCGCGGTAGCGCCAGCGTCATCACCGGGCCTGGAGGG
TCTGCTGCCGGCGGTTCAACAATGCAACATAGCGCTGAGCGGCCGCATGG
GCGGGCGAGAAAAGATGGCCTGGTGGGGGCCAAGGTGCACATTCACGGTC
CGGCCTGCGGACACCGTGCAGTGCTTCACGAGGGCCATGTCGATTTCTTG
GGGGAAGGCGGGCAATTAGAGTGCTACGCCGGGAAAGAGAAAACTGGCGA
CTGGGTGAGCACTACCAAGGAGGGCGGTGGAGGGTCTGCCGCTAGCTGTG
GGTGCGATAATTCTTCCAAGAAGAAGGAATCGAATGGTCCGGGCGAGCCG
ACGAACGCCCTCGTTCATTGGGACGGCGTGCGACTTGACCAACCACGAGG
CCGTTGTGAGGGCATCAACCACGGGCCGCAATGCGGTCACGATGTCGTTC
ATCACAATGGTCACTTGGACTACGTTGTGAAAGGGCGGCTCATTCATCCA
TTAGCAGCACCAGCTCATGCTAATGATGGCGACAGCAATGGGATCGACGA
CGCTAGCGGAGGGCAGGGTCGTGAGGCTGCCCCAATGTTCGAAGACCACG
GCTCCGTAGAAGCTCTCAATGACGATTTCCTTACGTTTTGGTCGGGCTTA
GACGCCTTGAACGAGACAGCCGACGAAGCGGTGACCACCTGGTGCGATAT
GTGCTGGTTGGACGAATCGACCCCCTCGACTGCTGCCGGGCCAGCTGGTG
CAGGTCCCCCGTCTGCTTCAGGAACAGCTGATGGCAAACCCCCATCTACT
TCAGGAGCAGCTGATGGGAAACCCCATTCTGCTCCCGTAGCTGCTTCTCC
ACAAAGCGGAGCTGCTTCTCCACAAACCGAATCTGTGAAGATCTGA
back to top