mRNA_E_fasciculatus_S2_contig8478.16603.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8478.16603.1
Unique NamemRNA_E_fasciculatus_S2_contig8478.16603.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8478.16603.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.140e-38
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:   40 MQAPFDPEGNGAPSNDMAVLQESPAAPGKHAQDGSGGPLEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQRQ 279
            MQAPFD EGNG+PS+D  VLQE+PAAPG HAQDGSGG LEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQR+
Sbjct:    1 MQAPFDAEGNGSPSDDTDVLQENPAAPGAHAQDGSGGLLEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQRE 80
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8478.16603.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Conserved3.140e-3888.75oligomeric Golgi complex subunit 4 n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8478contigE_fasciculatus_S2_contig8478:1663..2446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842506.4136593-CDS-E_fasciculatus_S2_contig8478:1662..17131696842506.4136593-CDS-E_fasciculatus_S2_contig8478:1662..1713Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8478 1663..1713 -
1696842506.4274592-CDS-E_fasciculatus_S2_contig8478:2218..24461696842506.4274592-CDS-E_fasciculatus_S2_contig8478:2218..2446Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8478 2219..2446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8478.16603.1prot_E_fasciculatus_S2_contig8478.16603.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8478 1663..2446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8478.16603.1

>prot_E_fasciculatus_S2_contig8478.16603.1 ID=prot_E_fasciculatus_S2_contig8478.16603.1|Name=mRNA_E_fasciculatus_S2_contig8478.16603.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
VGWCTKKHSRACPMQAPFDPEGNGAPSNDMAVLQESPAAPGKHAQDGSGG
PLEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQRQ
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mRNA from alignment at E_fasciculatus_S2_contig8478:1663..2446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8478.16603.1 ID=mRNA_E_fasciculatus_S2_contig8478.16603.1|Name=mRNA_E_fasciculatus_S2_contig8478.16603.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=784bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8478:1663..2446- (Ectocarpus fasciculatus EfasUO2)
GTGGGCTGGTGCACCAAAAAGCACAGCAGGGCGTGCCCCATGCAGGCGCC
TTTCGATCCAGAGGGAAATGGCGCGCCCTCGAACGACATGGCCGTGCTGC
AAGAGAGCCCGGCAGCGCCTGGGAAACATGCGCAGGATGGCAGCGGCGGC
CCGTTAGAGGCAACCTTCGAAGAGAGGTTCGAGCAGTTTTACCTACAGCT
TGCCGAGGGCAAGACCGGGGGCATGGTGGTAAGGGCAACCGCTACAATAC
TACTCTTTTGGAACTGCGTTGGGGCAGATGGGAGTGTGCTGTGACCTCGC
TGCCGTGCTGCTTTTTGAGAGTGTTCTTCTGAGCTGTCTGCCTGCAATAG
TAATACCGCAGCAGTGCAAGAAGAGATTTCGCCGCATCCATCCCAATCGC
GCCACAGATCTCAACTTGCTATAAAAATGTGACACCTCCCAGCGAGTGCG
CAAGCAAAAGTGCGTGTACACGACCTTGTTTTATCCACAAACAATAGCAG
GCCGAAGAACGCCCTTCTATCTCGAGCACCGAGGCATCTCGCACCCACCA
CTGCAGCGGAGCTGTAAACGGCGGATCTCGAGACTGATTGTAGTCCGCAG
GACCGGGGCAGTTACGCACACTACAGCAGTACATCATTGCTCGAGGTCCC
ATTCCTGGTGCGCCACCGTCCGTTGAAAATGCACTAAAAAAACACGAGCA
ACCGAACCCGCTTCCAACACAAAACGATGGCAGGCCTGTGTCGACGAGAT
GCAAAGGATCGTGGATTCCACGCGTCAAAGACAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8478:1663..2446-

>mRNA_E_fasciculatus_S2_contig8478.16603.1 ID=mRNA_E_fasciculatus_S2_contig8478.16603.1|Name=mRNA_E_fasciculatus_S2_contig8478.16603.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8478:1663..2446- (Ectocarpus fasciculatus EfasUO2)
GTGGGCTGGTGCACCAAAAAGCACAGCAGGGCGTGCCCCATGCAGGCGCC
TTTCGATCCAGAGGGAAATGGCGCGCCCTCGAACGACATGGCCGTGCTGC
AAGAGAGCCCGGCAGCGCCTGGGAAACATGCGCAGGATGGCAGCGGCGGC
CCGTTAGAGGCAACCTTCGAAGAGAGGTTCGAGCAGTTTTACCTACAGCT
TGCCGAGGGCAAGACCGGGGGCATGGTGGCCTGTGTCGACGAGATGCAAA
GGATCGTGGATTCCACGCGTCAAAGACAG
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