prot_E_fasciculatus_S2_contig8471.16600.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig8471.16600.1
Unique Nameprot_E_fasciculatus_S2_contig8471.16600.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length121
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A226F027_FOLCA (Pre-mRNA-processing factor 19 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226F027_FOLCA)

HSP 1 Score: 110 bits (276), Expect = 4.140e-26
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 0
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 111
            E++NVANF GH G + ++AFSENGYY+A+A ED   +LWDLRKL NF  + + D  +   +AFD +G+YLA  G    +V+  K W E+A Y+ + G+ TGV+FG++ASF+ 
Sbjct:  373 EQSNVANFPGHNGRIISIAFSENGYYLATAAEDACVKLWDLRKLKNFKTIEMADNYSITDLAFDQTGTYLAVSGSD-VRVYGCKLWNEIAVYNDHTGTATGVRFGQNASFIA 483          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A8C4X9I8_ERPCA (Pre-mRNA-processing factor 19 n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4X9I8_ERPCA)

HSP 1 Score: 102 bits (253), Expect = 6.400e-23
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 111
            E+ NVANF GH G + ++AFSENGYY+A++ +D   +LWDLRKL NF  + + D     S+ FD SG+YLA  G    +++  K W E+  +  + G  TGV FG+ A FL 
Sbjct:  368 ERTNVANFPGHSGPITSIAFSENGYYLATSADDSSVKLWDLRKLKNFKTIQLDDNYEVKSLVFDQSGTYLAVAGSDI-RIYVCKQWSEVLNFTEHSGITTGVAFGQHAQFLT 478          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A851Y2P9_EOLRO (Pre-mRNA-processing factor 19 (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A851Y2P9_EOLRO)

HSP 1 Score: 100 bits (248), Expect = 1.070e-22
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLVRQTGHQR 118
            E+ NVANF GH G + ++AFSENGYY+A+A +D   +LWDLRKL NF  L + +     S+ FD SG+YLA GG    +++  K W E+  +  + G  TGV FG  A F+   TG  R
Sbjct:  233 ERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLENNFEVKSLIFDQSGTYLALGGTD-VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIA-STGMDR 349          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A8I6AD08_RAT (Pre-mRNA-processing factor 19 n=3 Tax=Euarchontoglires TaxID=314146 RepID=A0A8I6AD08_RAT)

HSP 1 Score: 100 bits (249), Expect = 2.350e-22
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLVRQTGHQR 118
            E+ NVANF GH G + ++AFSENGYY+A+A +D   +LWDLRKL NF  L + +     S+ FD SG+YLA GG    +++  K W E+  +  + G  TGV FG  A F+   TG  R
Sbjct:  374 ERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTD-VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIA-STGMDR 490          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A433P8B5_9FUNG (Pre-mRNA-processing factor 19 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P8B5_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 6.160e-21
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    4 NVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 111
            N+A F GH G V ALAFSENGY +A+A +D   +LWDLR L N   LT+ D    H++ FD+   YLA GG    ++F  K W EL   +   G + GVK+G  A +LV
Sbjct:  405 NIATFPGHTGKVGALAFSENGYMLATASQDNLVKLWDLRNLVNTKTLTLADDYKVHTLDFDYHAQYLAVGGTD-VRIFKAKQWTELVKLEDNSGEIMGVKWGDMAGYLV 512          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A1Y1HY70_KLENI (Pre-mRNA-processing factor 19 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HY70_KLENI)

HSP 1 Score: 94.0 bits (232), Expect = 5.500e-20
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 0
Query:    2 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDGAA--HSVAFDFSGSYLAAGGKKCTKVFAVKT----WGELATYDGYGGS--VTGVKFGKSASFLV 111
            +ANVA F+GH G VNA++FSENGY++A+A  DG  +LWDLRKL NF      D     ++V FD SGSYLAAGG    +++AV T    W  + T+    G+  +   KFGK AS+L 
Sbjct:  386 QANVAKFEGHSGPVNAISFSENGYFLATAARDG-VKLWDLRKLKNFRTFAPWDADTDCNTVEFDHSGSYLAAGGAD-VRIYAVGTVKQEWNTVKTFPDLSGTSKILNAKFGKDASYLA 501          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A388LGX9_CHABU (Pre-mRNA-processing factor 19 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LGX9_CHABU)

HSP 1 Score: 94.0 bits (232), Expect = 5.980e-20
Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 0
Query:    2 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG--AAHSVAFDFSGSYLAAGGK--KCTKVFAVK-TWGELATYDGYGGS--VTGVKFGKSASFLVRQTGHQRVR 120
            + NVA F+GH G V++++FSENGY++A+A +DG  +LWDLRKL NF +L+  DG  A ++V FDFSGSYLA  G   +  +V +VK  W  + T++ + G+  +T V+FG  A ++   T  + +R
Sbjct:  457 QTNVATFQGHTGAVSSVSFSENGYFLATAAQDG-VKLWDLRKLKNFRSLSPYDGTIATNTVEFDFSGSYLAMAGSDIRIHQVQSVKHEWPIIKTFNDFSGTGTITSVRFGPDAKYMAITTMDKNLR 581          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A0L0FZP2_9EUKA (Pre-mRNA-processing factor 19 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZP2_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.000e-19
Identity = 59/119 (49.58%), Postives = 71/119 (59.66%), Query Frame = 0
Query:    5 VANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLR--KLTNFDNLTIGDGAA--HSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLVRQTGHQRV 119
            VA+F GH   V  LAFSENGYYMAS   D   RLWDLR  K+ NF      DG    HSV FD SG+YLA GG+  T+V+ VK W EL   + + G+VT V FG  A  +V  +  +RV
Sbjct:  389 VADFTGHTDAVTDLAFSENGYYMASTCNDNTVRLWDLRMKKILNFKVFEY-DGKINPHSVQFDRSGTYLAVGGQD-TRVYVVKHWDELCRLEDHTGAVTKVAFGPDAGSIVSASMDRRV 505          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A0A1I8HIV3_9PLAT (Pre-mRNA-processing factor 19 n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HIV3_9PLAT)

HSP 1 Score: 91.7 bits (226), Expect = 1.520e-19
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDGA-----------AHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTGVKFGKSASFLV 111
            E+  + NF+ H   + ALAFSENGYY+A+A ED   RLWDLRKL NF  L +G              A ++AFD SG+YLAAGG    +++  K + EL   D +  +VTG++FG +A  +V
Sbjct:    8 EQKFLTNFEQHTAPLTALAFSENGYYLATAAEDSTVRLWDLRKLKNFKVLQLGGSESGQPSGPASSHARALAFDHSGTYLAAGGGDI-RLYHTKQFNELCMLDNHTAAVTGLRFGTNARSIV 128          
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Match: A9SC45_PHYPA (Pre-mRNA-processing factor 19 n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9SC45_PHYPA)

HSP 1 Score: 90.1 bits (222), Expect = 1.270e-18
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 0
Query:    2 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG--AAHSVAFDFSGSYLAAGGK--KCTKVFAVKT-WGELATYDGYGGS--VTGVKFGKSASFLVRQTGHQRVR 120
            +ANVA F+GH G V  ++FSENGY++A+AG+DG  +LWDLRKL NF +    D     ++V FD+SGSYLA GG   +  +V +VK  W  +  +    G+  VT ++FG  AS+L   +  + +R
Sbjct:  387 QANVAKFEGHTGPVTDISFSENGYFLATAGQDG-VKLWDLRKLKNFRSFAPYDNNTPTNTVEFDYSGSYLAVGGSDIRVYQVASVKQEWNTIKIFPDLSGTGKVTSIRFGPDASYLAVGSSDRNLR 511          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8471.16600.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A226F027_FOLCA4.140e-2648.21Pre-mRNA-processing factor 19 n=1 Tax=Folsomia can... [more]
A0A8C4X9I8_ERPCA6.400e-2344.64Pre-mRNA-processing factor 19 n=4 Tax=Polypteridae... [more]
A0A851Y2P9_EOLRO1.070e-2245.38Pre-mRNA-processing factor 19 (Fragment) n=3 Tax=N... [more]
A0A8I6AD08_RAT2.350e-2245.38Pre-mRNA-processing factor 19 n=3 Tax=Euarchontogl... [more]
A0A433P8B5_9FUNG6.160e-2145.87Pre-mRNA-processing factor 19 n=1 Tax=Endogone sp.... [more]
A0A1Y1HY70_KLENI5.500e-2047.46Pre-mRNA-processing factor 19 n=1 Tax=Klebsormidiu... [more]
A0A388LGX9_CHABU5.980e-2043.65Pre-mRNA-processing factor 19 n=1 Tax=Chara brauni... [more]
A0A0L0FZP2_9EUKA1.000e-1949.58Pre-mRNA-processing factor 19 n=1 Tax=Sphaeroforma... [more]
A0A1I8HIV3_9PLAT1.520e-1943.44Pre-mRNA-processing factor 19 n=1 Tax=Macrostomum ... [more]
A9SC45_PHYPA1.270e-1842.86Pre-mRNA-processing factor 19 n=3 Tax=Physcomitriu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 43..86
e-value: 120.0
score: 3.8
coord: 1..40
e-value: 2.0E-9
score: 47.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 4..40
e-value: 8.7E-8
score: 32.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 8..42
score: 15.655
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..120
e-value: 7.2E-30
score: 105.8
IPR038959Pre-mRNA-processing factor 19PANTHERPTHR43995FAMILY NOT NAMEDcoord: 1..111
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 27..41
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 8..120
score: 15.61
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8471contigE_fasciculatus_S2_contig8471:5712..6551 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8471.16600.1mRNA_E_fasciculatus_S2_contig8471.16600.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig8471 5712..6551 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig8471.16600.1 ID=prot_E_fasciculatus_S2_contig8471.16600.1|Name=mRNA_E_fasciculatus_S2_contig8471.16600.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
EKANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNL
TIGDGAAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYDGYGGSVTG
VKFGKSASFLVRQTGHQRVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR038959Prp19
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat