mRNA_E_fasciculatus_S2_contig8462.16593.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8462.16593.1
Unique NamemRNA_E_fasciculatus_S2_contig8462.16593.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8462.16593.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV2_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.890e-39
Identity = 80/105 (76.19%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:   49 MLIPWAFSTAFASSIVSVAVGFSPPTSLGSTTGHGTR--------------GSTPVSSTRVGERIRIRCTRGIHARGGGDRHARDGIRRPWRRSAMALEGVEVEE 321
            MLIPWA STA ASSIVSVAVGF PPTSLG TTGHGTR              GSTPVSS RVGER+R+RCTRGIHARGGGDRH RDGIRRPWRRSAMA + VEVEE
Sbjct:    1 MLIPWAISTALASSIVSVAVGFFPPTSLGYTTGHGTRLTTPRPFSRAAGAPGSTPVSSARVGERLRVRCTRGIHARGGGDRHGRDGIRRPWRRSAMATDEVEVEE 105
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8462.16593.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.890e-3976.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8462contigE_fasciculatus_S2_contig8462:5066..6415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionMulti antimicrobial extrusion protein
Ec32 orthologEc-06_009720.1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842505.4217277-CDS-E_fasciculatus_S2_contig8462:5065..52161696842505.4217277-CDS-E_fasciculatus_S2_contig8462:5065..5216Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 5066..5216 +
1696842505.4365716-CDS-E_fasciculatus_S2_contig8462:6244..64141696842505.4365716-CDS-E_fasciculatus_S2_contig8462:6244..6414Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8462 6245..6414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8462.16593.1prot_E_fasciculatus_S2_contig8462.16593.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8462 5066..6414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8462.16593.1

>prot_E_fasciculatus_S2_contig8462.16593.1 ID=prot_E_fasciculatus_S2_contig8462.16593.1|Name=mRNA_E_fasciculatus_S2_contig8462.16593.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
RRTTCDTCCLLHTGNGMLIPWAFSTAFASSIVSVAVGFSPPTSLGSTTGH
GTRGSTPVSSTRVGERIRIRCTRGIHARGGGDRHARDGIRRPWRRSAMAL
EGVEVEE
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mRNA from alignment at E_fasciculatus_S2_contig8462:5066..6415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8462.16593.1 ID=mRNA_E_fasciculatus_S2_contig8462.16593.1|Name=mRNA_E_fasciculatus_S2_contig8462.16593.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1350bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:5066..6415+ (Ectocarpus fasciculatus EfasUO2)
AGAAGGACGACCTGCGACACCTGCTGCCTGCTGCACACCGGCAACGGCAT
GCTCATCCCGTGGGCCTTTTCGACGGCATTCGCGTCTTCCATAGTCTCTG
TTGCAGTTGGATTCTCTCCTCCCACTTCGCTAGGGTCCACTACAGGGCAT
GGTGAGTCGACTCGTGGAGATGGGTATGGACGCATGCGTGGCTTGCTGCC
CCTGCAGCAGCAGTGCATTGAACGAAGTGATTCCCTCTGTTGCACCAACG
TCAGCTGCGGCGGTGTCAACATGTCGTACTTGCTTGCCATCGTGCCTGAG
TAGTGAGGCAGAGAGAGCCTGGTTGTGTGAAGGGAAGCTGCGTATCGGTA
TGCAGATGTTGGCCCATGGTAGTAGTGTGTAAAGCAAGTACCTCTCTCTG
TGCCCAGCTGTTCAAATTGCTGTCATGTTGGGATGCCGCACCAGGGACTA
CAGTACTACTGCTGTACATGGACGTTGGTTGCTGTGTCTATCGGCCAAGC
CTTGAACCACCGCTATATCAGAGCCGTGTCATGGACCGGTCGTCGCAGAG
CTTGCTCAATTGACACCAAGAGAAAAACACATGGATGGTATATACGGTCC
ACCGGAACCGGTCCGTGCAACGCATGCGAACGGAGGAGGAATGGTCCGAC
TGGCCGTGGCATATGCATACTACACAGCAGTATACCTCGCATAGAACATA
CCCATGTAACGCAAACCAAGGAACGATTTTTGATCAGTGCTTCAGGGGTT
TGTTGGCAAGTCGGAGGTGGGACTGCTTGTCTGCCTCCGGTGCATCAAGA
ACACAACCTTTGAGCGGGGAAATATCGTGAAATCTCCCCGCGGTGGAAGG
TGAACAGCAAGCCCTTTGGACCCTCAATTGAAAACGTCCGTACTGGAACA
GCAATCGCTGCGTGCATGGCAACAACCTTTCCGGGGGCGGGGAACGCGCG
TTGACGTCTTGCTTCTAGTCATGATTCTTGGTGCGGAATAAACACGATGC
AATGTTCGCGCTAGTTTACATCGTGCGAGATTCGCTCTGCAGCGTTCGTG
TCACTATCATCTATTTTTTTACCTGCAGCTACACGAAAAAAATATGCATA
CTAGACAATGAGTCTAAACCCACGGTGATATTTACATGGTAAGTTTTTGA
TCACACCCCGGGCCTTTCTCCCCCAGCAGGCACACGAGGTAGCACGCCAG
TGTCCTCCACTCGTGTAGGGGAGCGGATACGGATCCGGTGCACAAGAGGT
ATACACGCCCGTGGAGGCGGTGATCGTCATGCCCGGGACGGGATTCGACG
GCCATGGCGGAGATCGGCCATGGCCCTAGAAGGGGTAGAAGTGGAGGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8462:5066..6415+

>mRNA_E_fasciculatus_S2_contig8462.16593.1 ID=mRNA_E_fasciculatus_S2_contig8462.16593.1|Name=mRNA_E_fasciculatus_S2_contig8462.16593.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:5066..6415+ (Ectocarpus fasciculatus EfasUO2)
AGAAGGACGACCTGCGACACCTGCTGCCTGCTGCACACCGGCAACGGCAT
GCTCATCCCGTGGGCCTTTTCGACGGCATTCGCGTCTTCCATAGTCTCTG
TTGCAGTTGGATTCTCTCCTCCCACTTCGCTAGGGTCCACTACAGGGCAT
GGCACACGAGGTAGCACGCCAGTGTCCTCCACTCGTGTAGGGGAGCGGAT
ACGGATCCGGTGCACAAGAGGTATACACGCCCGTGGAGGCGGTGATCGTC
ATGCCCGGGACGGGATTCGACGGCCATGGCGGAGATCGGCCATGGCCCTA
GAAGGGGTAGAAGTGGAGGAG
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