mRNA_E_fasciculatus_S2_contig8462.16591.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G810_ECTSI) HSP 1 Score: 255 bits (652), Expect = 6.480e-85 Identity = 127/150 (84.67%), Postives = 132/150 (88.00%), Query Frame = 1
Query: 1 MFCDPFPIVYTTLAAKYLPKLDAKSSGG---SKGCCSDASCND-EGDVKTVQSLQHWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDAFDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVEQ 438
M C PF +VYT AKYLP LDAK+SGG SKGCCSDASCND GDVKTVQSLQHWKDLKRTEPLL+VDFTASWCKPCRAMAP+FEGLAKENKGAAAVF KVDID LP+ FDGTSIPAFYV KNGVKVDSVTGSGE KLRKLVADHV Q
Sbjct: 1 MLCHPFLLVYTARTAKYLPYLDAKASGGGSYSKGCCSDASCNDGTGDVKTVQSLQHWKDLKRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVKVDSVTGSGESKLRKLVADHVGQ 150
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: thioredoxin (H2-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA23A) HSP 1 Score: 87.8 bits (216), Expect = 2.940e-19 Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 91 GCCSDASCNDEGD-VKTVQSLQHWK----DLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
G S++ E D V S W+ ++K + LL++DFTASWC PC+ MAPVF+GLA+ K FVK+D+D +PD F ++P F ++K G +VD V G+ +D+L + ++ H
Sbjct: 11 GAASESETGSESDRVSKFSSSARWQLYFNEIKESSKLLVIDFTASWCGPCKMMAPVFQGLAE--KFTDVEFVKIDVDEVPDVAREFGVQAMPTFVLVKRGREVDRVVGAKKDELERKISHH 129
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH67_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.350e-19 Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 130 VKTVQSLQHWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDY---LPDAFDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
+ V+S + W++L+ L+V FTA+WC PC+ +APVF GLA+ + G A FVKVDID + D D ++P F+V ++G ++ + G+ +L +LV +H
Sbjct: 57 IVVVKSEEQWEELRSAPGTLVVQFTATWCGPCKRVAPVFAGLARAHSGPGAAFVKVDIDAAAAVADECDVAAVPQFHVFRDGKRIAKMVGAKPQQLEQLVKEH 159
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QF43_9MAGN) HSP 1 Score: 86.3 bits (212), Expect = 8.270e-19 Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 130 VKTVQSLQHWKDL----KRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
V+ S WK+L K + L+++DFTA+WC PCR MAP+F LA+ K VFVK+D+D L D F+ ++P F +K GV VD + G+G+++L K + H
Sbjct: 5 VQAFHSSDEWKNLFTSLKDSSQLIVIDFTATWCPPCRMMAPIFADLAE--KFTEVVFVKIDVDELKDVCEEFEVEAMPTFIFIKQGVVVDKIVGAGKNELEKKIELH 109
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1L605_SOYBN) HSP 1 Score: 85.9 bits (211), Expect = 1.650e-18 Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 154 HWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVE 435
H+ ++K T L+++DFTASWC PCR +APVF +AK K + A FVK+D+D LPD F ++P F + K G +VD V G+ +D+L+ + H +
Sbjct: 37 HFNEVKETSKLVVIDFTASWCGPCRFIAPVFNEMAK--KFSNAEFVKIDVDELPDVAKDFKVEAMPTFVLCKKGKEVDRVVGARKDELQNKIQKHYQ 131
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QF28_9MAGN) HSP 1 Score: 85.1 bits (209), Expect = 3.030e-18 Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 100 SDASCNDEGDVKTVQSLQ-------HWKDLKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
S +S D + VQ++ H+ LK + L+++DFTA+WC PC+ MAP+F LA+ K VFVK+D+D L D F ++P F +LK G +VD V G+ +D+L K + H
Sbjct: 6 SSSSTGDSSESSRVQAIHSSGEWRNHFNSLKNSSQLIVIDFTATWCGPCKMMAPIFADLAE--KFTDVVFVKIDVDELMDVSREFGVQAMPTFVLLKQGKEVDKVVGAKKDELEKKIEMH 123
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JG41_PAPSO) HSP 1 Score: 85.1 bits (209), Expect = 3.120e-18 Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 109 SCNDEGDVKTVQSLQHWKD----LKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDA---FDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVE 435
S ++ V+ S WK+ +K + L+++DFTA+WC PC+ MAPVF L++ A +FVK+D+D LPD F ++P F +LK G +VD + G+ +D+L + VA H +
Sbjct: 15 STSESSRVQAFHSSSEWKNHFNSVKGSNQLMVIDFTATWCGPCKFMAPVFSELSERFPDA--IFVKIDVDELPDVSREFGVQAMPTFILLKQGKEVDKIVGAKKDELERKVALHCQ 128
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (domain-containing protein n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CUS7_OPUST) HSP 1 Score: 84.7 bits (208), Expect = 3.860e-18 Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 118 DEGDVKTVQSLQHWKDL----KRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDY---LPDAFDGTSIPAFYVLKNGVKVDSVTGSGEDKLRKLVADHVEQ 438
+EG V T QS HWK+L K + L++VDFTASWC PCR MAP+ AK K VFVKVD+D + + + ++P+F LK+G +++ + G+ +D L + H +
Sbjct: 9 EEGQVITCQSTDHWKELLDKAKEAKKLVVVDFTASWCGPCRFMAPILADFAK--KFPHVVFVKVDVDEQKAIAEEWKVEAMPSFVFLKDGQEIERIVGANKDGLLAALTKHASE 120
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AJL9_BRABE) HSP 1 Score: 84.0 bits (206), Expect = 4.630e-18 Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 178 EPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDAFDGTSI---PAFYVLKNGVKVDSVTGSGEDKLRKLVA 423
+ L++VDFTASWC PCR +APVFE LA+EN +FVKVD+D + I P F KNG KV+ + G+ EDKLR++VA
Sbjct: 20 DKLIVVDFTASWCGPCRMIAPVFEKLAEENPDV--IFVKVDVDANDETAGACGISAMPTFQCYKNGAKVEEMCGASEDKLREMVA 102
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Match: Thioredoxin (n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP36_9RHOD) HSP 1 Score: 84.0 bits (206), Expect = 4.630e-18 Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 130 VKTVQSLQHWKD-LKRTEPLLLVDFTASWCKPCRAMAPVFEGLAKENKGAAAVFVKVDIDYLPDAFDGTSI---PAFYVLKNGVKVDSVTGSGEDKLRKLVADH 429
VK VQSL+ + L+ T+ L++VDF A WC PCR +APV E L +E K VF+KVD+D LPD + P F K G KVD +TG+ E LR V H
Sbjct: 2 VKEVQSLEEFDQILEGTDKLIVVDFFAVWCGPCRYIAPVMERLQEEYKDTV-VFIKVDVDKLPDLAQRCGVAAMPTFIFYKGGKKVDDLTGANEQVLRDKVRKH 104 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8462.16591.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8462.16591.1 >prot_E_fasciculatus_S2_contig8462.16591.1 ID=prot_E_fasciculatus_S2_contig8462.16591.1|Name=mRNA_E_fasciculatus_S2_contig8462.16591.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=164bp MFCDPFPIVYTTLAAKYLPKLDAKSSGGSKGCCSDASCNDEGDVKTVQSLback to top mRNA from alignment at E_fasciculatus_S2_contig8462:811..2088+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8462.16591.1 ID=mRNA_E_fasciculatus_S2_contig8462.16591.1|Name=mRNA_E_fasciculatus_S2_contig8462.16591.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1278bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:811..2088+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8462:811..2088+ >mRNA_E_fasciculatus_S2_contig8462.16591.1 ID=mRNA_E_fasciculatus_S2_contig8462.16591.1|Name=mRNA_E_fasciculatus_S2_contig8462.16591.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8462:811..2088+ (Ectocarpus fasciculatus EfasUO2)back to top |