mRNA_E_fasciculatus_S2_contig8460.16590.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8460.16590.1
Unique NamemRNA_E_fasciculatus_S2_contig8460.16590.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Chp-1 (/ RAR1 homologue n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIZ6_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 4.770e-58
Identity = 94/102 (92.16%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:   70 MKVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPGATKEGVG 375
            MKVYVHFEEGSDAELHVTLKLTLPKKWNDESPV+LLKLFIDSYNKRKP+NQLDV ECHLE GA  DQGAE+QALAKGDTIGATITDRADVFVRPGATKEG+G
Sbjct:    1 MKVYVHFEEGSDAELHVTLKLTLPKKWNDESPVRLLKLFIDSYNKRKPDNQLDVDECHLETGASLDQGAEEQALAKGDTIGATITDRADVFVRPGATKEGMG 102
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Chp-1 (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.590e-26
Identity = 58/100 (58.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   73 KVYVHFEEGSDAELHVTLKLTLPKKWNDE-SPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPGATKEG 369
            KVY+H+EEGSDAELH TLKLTLP+KW  E SP+++L+LFI+SYNK+KP   L    CHLE   G        AL+ GD IG  + DR D+ VRPGATK G
Sbjct:    4 KVYLHYEEGSDAELHTTLKLTLPRKWVAEGSPMQVLELFIESYNKKKPQTPLSAEACHLENSDGL-------ALSAGDVIGDVMRDREDIRVRPGATKPG 96
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2Q7H8_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 8.790e-21
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:   70 MKVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPGA 357
            MKVYVH+EEGSD  LH TLKLTLPKKW D+   K+L LF++SYN + P N L++   HLE   G       Q ++  D +   + DR D+ VRPGA
Sbjct:    1 MKVYVHYEEGSDESLHKTLKLTLPKKWADKETNKVLDLFLESYNAKNPGNLLEMGSVHLENSRG-------QKMSGQDLVKDLMNDREDIHVRPGA 89
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YTE8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.120e-15
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   52 RQRRREMKVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPG 354
            R R R  K+Y+HFEEG +A  H+TLKLT+P KW+  +  +L + F+D+YN+RKP+N++D    HLE        +E +AL   +TI  TI +R D++V+ G
Sbjct:  694 RLRARLKKIYLHFEEGDEAN-HLTLKLTIPSKWSGATVDRLKEFFLDTYNERKPDNKVDPNAYHLER-------SENRALRGDETIHDTIKNRDDIYVKLG 786
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XA72_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.270e-15
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   73 KVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPG 354
            KVY+HFEEG +A  H+TLKLT+P KW+  +  +L + F+++YN+RKP+N+++  E HLE        +E + L   +TI   I +R D++V+PG
Sbjct:   18 KVYLHFEEGEEAN-HLTLKLTIPSKWSGATIDRLKEFFLETYNERKPDNKVNPVEYHLER-------SEGRILRGDETIHEMIKNRDDIYVKPG 103
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Aste57867_5823 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KHK6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.010e-13
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   73 KVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGD-TIGATITDRADVFVRPG 354
            KVY+HFEEG +A  H+TLKLT+P KW+  +  +L + F+++YN+RKP N++D    HLE   G         L +GD TI   + +R D++V+ G
Sbjct:   18 KVYLHFEEGDEAN-HLTLKLTIPSKWSGATIDRLKEFFLETYNERKPENKVDPHAYHLERSEGR--------LLRGDETIHEMVKNRDDIYVKVG 103
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7U4_GLOUD)

HSP 1 Score: 73.6 bits (179), Expect = 6.120e-13
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   73 KVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPGAT 360
            KVY+HFEEG+DA LH+TLK+TLP KW   +   L + F++ YN +KP ++LD A  HLE         +  AL   + +   +    D+F++ GA+
Sbjct:   18 KVYMHFEEGADAALHLTLKMTLPSKWASHTVDYLKEFFVEHYNTKKPESKLDGALFHLER--------KSTALHGDELLHYAVQKHDDLFLKSGAS 105
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTH4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.410e-12
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   70 MKVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPGA 357
            MKVY+H+ E +   LH TLK+TLP+KW D     LL+ F+ +YN + P N+L++    LE           + L+  + +   I DRAD++++ GA
Sbjct:    1 MKVYIHYVEPAATSLHQTLKITLPRKWEDGPIKNLLETFVKNYNDKHPENELEIDGIRLET-------EMLEYLSPSEIVKERINDRADLYIKLGA 89
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7M6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.490e-12
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   73 KVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYNKRKPNNQLDVAECHLE 249
            KVY+H++E +DA LH+TLK+TLP KW   +   L + F++ YN +KP+ QLD A+ HLE
Sbjct:   19 KVYMHYDESADAALHLTLKMTLPSKWAGHTVDYLKEFFVEHYNTKKPDEQLDAAQFHLE 77
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BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z8B4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.860e-11
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:   70 MKVYVHFEEGSDAELHVTLKLTLPKKWNDESPVKLLKLFIDSYN---KRKPNNQLDVAECHL---EMGAGSDQGAEQQALAKGDTIGATITDRADVFVRPGATK 363
            MKV++H+++  D  LH TLK+TLPK W +    KLL  F++SYN   K    N+L+  + HL   E   G+ +      LA       TI DR DV++  G ++
Sbjct:    1 MKVFLHYQDNDDTNLHKTLKITLPKSWKNGPTSKLLGQFVESYNGNEKFGSANKLEADQMHLATREEATGTSESHRLTPLASDAVTIETIPDRGDVYIMHGPSR 104
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8460.16590.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Chp-14.770e-5892.16/ RAR1 homologue n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
Chp-11.590e-2658.00n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C... [more]
Hypothetical8.790e-2150.00protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized1.120e-1543.56protein (Fragment) n=1 Tax=Aphanomyces invadans Ta... [more]
Uncharacterized3.270e-1542.55protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Aste57867_58233.010e-1342.11protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized6.120e-1339.58protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Hypothetical8.410e-1236.46protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Uncharacterized8.490e-1250.85protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Hypothetical1.860e-1136.54protein (Fragment) n=1 Tax=Pseudictyota dubia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8460contigE_fasciculatus_S2_contig8460:1195..3043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score194.1
Seed ortholog evalue3.8e-47
Seed eggNOG ortholog2880.D8LIZ6
Model size377
KEGG koko:K13458
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0002252,GO:0002376,GO:0002679,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008324,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009626,GO:0009814,GO:0009816,GO:0009817,GO:0009987,GO:0012501,GO:0015075,GO:0015318,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0022857,GO:0022890,GO:0031072,GO:0031267,GO:0031647,GO:0033554,GO:0034050,GO:0034220,GO:0042742,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045087,GO:0045730,GO:0046872,GO:0046914,GO:0050821,GO:0050832,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0051716,GO:0051879,GO:0055085,GO:0065007,GO:0065008,GO:0098542,GO:0098655
Exons2
EggNOG free text desc.negative regulation of Rho-dependent protein serine/threonine kinase activity
EggNOG OGsKOG1667@1,KOG1667@2759
Cds size375
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842505.254616-CDS-E_fasciculatus_S2_contig8460:1194..13891696842505.254616-CDS-E_fasciculatus_S2_contig8460:1194..1389Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8460 1195..1389 -
1696842505.2741647-CDS-E_fasciculatus_S2_contig8460:2863..30431696842505.2741647-CDS-E_fasciculatus_S2_contig8460:2863..3043Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8460 2864..3043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8460.16590.1prot_E_fasciculatus_S2_contig8460.16590.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8460 1195..3043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8460.16590.1

>prot_E_fasciculatus_S2_contig8460.16590.1 ID=prot_E_fasciculatus_S2_contig8460.16590.1|Name=mRNA_E_fasciculatus_S2_contig8460.16590.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=125bp
SALPTLAHSTNFLRQQRRQRRREMKVYVHFEEGSDAELHVTLKLTLPKKW
NDESPVKLLKLFIDSYNKRKPNNQLDVAECHLEMGAGSDQGAEQQALAKG
DTIGATITDRADVFVRPGATKEGVG
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mRNA from alignment at E_fasciculatus_S2_contig8460:1195..3043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8460.16590.1 ID=mRNA_E_fasciculatus_S2_contig8460.16590.1|Name=mRNA_E_fasciculatus_S2_contig8460.16590.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8460:1195..3043- (Ectocarpus fasciculatus EfasUO2)
AGCGCCCTGCCGACTCTTGCACACAGCACAAATTTCTTACGGCAGCAGCG
ACGTCAAAGAAGGAGAGAGATGAAGGTCTACGTGCACTTCGAGGAGGGCA
GCGATGCGGAGCTACACGTGACGCTGAAGCTGACCCTGCCGAAGAAGTGG
AACGACGAGTCTCCGGTCAAGCTTCTCAAGGTACGATGGATTGCTCCGAG
ACCACAGCAGCGCCGCAGCGGGCACGGGGCCGCTTGTGCTATTTCTGAAC
CACCCGTGAGCGCCAGGTTGTGCTTGCGTGAAAGGGACACGAAGGGAAAC
AGCGTAGAGACCCCAGGCGGTGTGACAAGAGAGGCTCTCTTGGGATGTTG
TGTGTGGCTTCGGCAAAAGCTTCGAGAAGATCTACCGTTGTTTCCCGGAA
TTTTCAAAGCTGTACCAACACTCGACGGTGCGCCTGCTGCTGTGTAGAAG
TATGTACCACCAAAAGCCATTGGCGAATACACGAACGAATGAGGAGAGTG
GATACCTTCTGTCCTGCGGGCGGGCGCGACCCTGCTGTCCAGAAGCACTG
CCGAAGTGTTTGCTACAAAATATACGACGATGCCGTACATTGTGGAAGAC
ACCACACCCCCTTGCTTGACCTGTGTGTTGTATTCAAAACTCGAGTACTC
TGCAGCCAACTGCAGCAGCAAAAGAGGAGTGACGGTGCCGAGCATGGATG
TGTTGGGGCCGTCTCGTCGAGAGCTCTTCGGAAATGATATCAGTTGAGCG
TGGCATCCTCATCGTCGTGGACGATGCGGGCCTTGAAAATCGGTGCAGGG
GGTGCGGTATCTAACGTATGCAACCTACAGCGGGTACGTACCTAGTTTGT
AGCTGACTATTTACCCCTGCCTCTACATAGAATCGATTACCTTTCTTGCT
GTTAGACGAACCGCGACCGCGGCTGCTGCTGCTGCTGAGGGAAGCTGCTG
CTGCCATTCCCCGTCTCTTTTTTCACCTGTCCGCGAGAGACCACCTGGAA
GTCTCCGTGCGTTTTGGCGTATGCCGCTCCGAGGTTAGATACACAACCAC
CTCGGGGCGGGCTAGTGTTATGGAATTGGAGGTGGACACGTGATCTTGCC
TGACCATGGTTATTTGGCGTTATCAGATGCTATGAGGAGAAGTCATGCAA
GATTCGGACTTTCTGTGTGCGTTGGCTTGGGTTGCGTTGGAAGACAACGG
AAAAACATTAACTATTGTAAGAGGAGAGAAAAAAGGAAAGCAACAACTGC
ATCTGTGGCCGGGCAAGATAGTTCCACACAGCAGAAAGGTTGGTTTTAAA
AGGGGTGCAATCTCATTACACTTACCTCCAGTCCTCCACCAAATAGGCCA
ACAAAGTGGTACAGTAGTGTTCGCTCGAGTGCTTGTCAAGCGTGTTGTGC
GTCGTTGTGTGTGTGCATATGAACAACCCGGGCAGGTCACACCGAACAAA
TACAACTCCCTTTTAGGAGCTACCGACCTTCGGCGGCGCAAAACGCAGTA
CAGCTCGAGTATACTCCCACTCACGCCCACTTTGTCTGCCTCCCAGGCGT
AACGAATACCCCTCGTTCCTCTCGTACATTTGTCATCGTCTCCAACGTGA
TGACGGCAGCAGCCTTACGCCCTCCCGTCTCCGCGCGCCGTTGCACTTGA
ACAGCTTTTCATCGACTCGTACAACAAGCGGAAGCCAAACAACCAGCTCG
ACGTCGCGGAGTGCCACCTGGAGATGGGGGCAGGATCGGACCAGGGGGCG
GAGCAACAAGCCTTGGCCAAGGGAGACACGATCGGTGCCACCATCACCGA
TAGGGCGGACGTGTTCGTGCGGCCGGGAGCAACGAAGGAGGGGGTGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8460:1195..3043-

>mRNA_E_fasciculatus_S2_contig8460.16590.1 ID=mRNA_E_fasciculatus_S2_contig8460.16590.1|Name=mRNA_E_fasciculatus_S2_contig8460.16590.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8460:1195..3043- (Ectocarpus fasciculatus EfasUO2)
AGCGCCCTGCCGACTCTTGCACACAGCACAAATTTCTTACGGCAGCAGCG
ACGTCAAAGAAGGAGAGAGATGAAGGTCTACGTGCACTTCGAGGAGGGCA
GCGATGCGGAGCTACACGTGACGCTGAAGCTGACCCTGCCGAAGAAGTGG
AACGACGAGTCTCCGGTCAAGCTTCTCAAGCTTTTCATCGACTCGTACAA
CAAGCGGAAGCCAAACAACCAGCTCGACGTCGCGGAGTGCCACCTGGAGA
TGGGGGCAGGATCGGACCAGGGGGCGGAGCAACAAGCCTTGGCCAAGGGA
GACACGATCGGTGCCACCATCACCGATAGGGCGGACGTGTTCGTGCGGCC
GGGAGCAACGAAGGAGGGGGTGGGG
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