mRNA_E_fasciculatus_S2_contig846.16589.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig846.16589.1
Unique NamemRNA_E_fasciculatus_S2_contig846.16589.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 4.450e-113
Identity = 206/208 (99.04%), Postives = 206/208 (99.04%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAPAGEEDELANRLAALRK 926
            MGNKVSLENELINLRLTSKQQQRGAIKCTKNEN AKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAA AGEEDELANRLAALRK
Sbjct:    1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 208
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Snf7-domain-containing (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV0_9STRA)

HSP 1 Score: 239 bits (610), Expect = 4.440e-70
Identity = 140/208 (67.31%), Postives = 158/208 (75.96%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAPAGEEDELANRLAALRK 926
            MGNKVSLE ELIN+RLTSKQ QR + KC KNE  AK +++ +I+ GN+EGA+I  QNAIREKNQ+LN LRLSSRIDAV+SRLETAIR KQ+NKSME            MDVERIS TMD FE+QFEDMDV AGYMEN+MG +TAMSTP +QVD LIQMVADE GLE+G +LDDAG V   VPA    A   PA E D LA RLA LRK
Sbjct:    1 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPA----AQQQPAQEVDALAQRLADLRK 204
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Snf7-domain-containing (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C887_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.100e-69
Identity = 140/209 (66.99%), Postives = 160/209 (76.56%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVP-AKPAAAPAAPAGEEDELANRLAALRK 926
            MGNKVSLE ELINL+LT+KQ QR + KC K E  AKAK++ AI+ GN+EGA+I  QNAIREKNQSLN LRL+SRIDAVA+RLETA+RMKQV+KSM+            MDVERISKTMD FE+QFEDMDV AGYMEN+MG +TAMSTP +QVD LIQMVADE GLE+  QLDDAG V   VP A PAAA        D+L+ RLA LRK
Sbjct:    1 MGNKVSLETELINLKLTAKQMQRSSTKCNKAEAAAKAKVKVAIQKGNMEGAKIAAQNAIREKNQSLNYLRLASRIDAVAARLETAVRMKQVDKSMQGVVKGMRKALKTMDVERISKTMDQFEKQFEDMDVVAGYMENSMGATTAMSTPADQVDQLIQMVADEHGLEVASQLDDAGKVGAAVPQAGPAAA--------DDLSQRLADLRK 201
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L033_9STRA)

HSP 1 Score: 214 bits (545), Expect = 8.340e-61
Identity = 120/207 (57.97%), Postives = 152/207 (73.43%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAPAGEEDELANRLAALR 923
            MGNK+SLE+ELINLR+TSK   R ++KC K+E  A  +L++AIK GN EGARIY Q+AIREKNQ++N LR++SRIDAVA+RLETAIRM  VNKSM+            M++E +SKTMD FEQQFED+DV++GYME AM  +TA  TP +QVD LI+ VADE  LELG+   +AGPV   VP++P       A ++D+LA RLA LR
Sbjct:    1 MGNKISLEDELINLRITSKSMNRSSVKCKKSEKAALDRLKKAIKQGNTEGARIYAQDAIREKNQAVNHLRMASRIDAVAARLETAIRMDTVNKSMQGVVKGMSKGMASMNIEEMSKTMDKFEQQFEDLDVKSGYMEEAMNTTTATQTPADQVDHLIKYVADENQLELGDAFLEAGPVGTTVPSQPEKV----AADKDDLAARLANLR 203
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7S6_TRICV)

HSP 1 Score: 214 bits (545), Expect = 8.620e-61
Identity = 114/182 (62.64%), Postives = 137/182 (75.27%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVP 848
            MGNK+SLE+ELINLR+TSKQ QR A KC KNE  A  KL++AIK GN EGARIYGQ+AIREKNQ+LNC+R++SRIDAV+SR+ETA+RM QV  SM+            M++E++S TMD FE QFED+DV+  YME AM  +TA STP EQVD LI MVADE  LELG+   +AGPV  K P
Sbjct:    1 MGNKISLEDELINLRITSKQMQRSAKKCEKNEKAALEKLKKAIKQGNAEGARIYGQDAIREKNQALNCIRMASRIDAVSSRIETAVRMNQVTSSMKGVVKGMEKGLQSMNIEQLSATMDKFESQFEDLDVKTQYMEGAMNATTATSTPAEQVDELITMVADENNLELGDAFAEAGPVGKKAP 182
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MGQ3_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.160e-60
Identity = 124/208 (59.62%), Postives = 151/208 (72.60%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSN-KVPAKPAAAPAAPAGEEDELANRLAALR 923
            MGN VSLE+ELINLR+TSKQ QR A KC KNE  A  KL++AIK+GN EGARIYGQ+AIREKNQ+LNC+R++SRIDAVASR+ETA+RM  V KSM+            M+VE+++ TMD FE QFED+DV+  YME AM  +TA +TP EQVD LI +VADE  L+LGE+  +AG V   K P +     AAPA  ED+L  RLA LR
Sbjct:    1 MGNSVSLEDELINLRITSKQMQRSAKKCEKNEKAAIEKLKKAIKSGNPEGARIYGQDAIREKNQALNCMRMASRIDAVASRIETAVRMNTVTKSMKGVVKGMDKGLASMNVEQMASTMDKFEAQFEDLDVKTQYMEGAMNSTTATTTPAEQVDELINLVADENNLDLGEEFAEAGTVGKIKQPKE-----AAPAKAEDDLEARLANLR 203
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWC9_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.070e-58
Identity = 122/208 (58.65%), Postives = 153/208 (73.56%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAPAGEEDELANRLAALRK 926
            MGNKVSL++ELINL++TS+Q    + KC K    AK ++++AI+ GN+EGARIY QNAIREKNQ+LN LR++SRIDAVA RLETAIR   ++K+M             MDVE+ISKTMD+FE+QFEDMDVRAGYMEN+M  STA +TP++QVD LI  VADE  L+L   LDDAG VS KVP +   +     G+ED LA+RL ALR+
Sbjct:    1 MGNKVSLQDELINLKITSRQMTSASKKCEKGARTAKNQVKKAIEKGNMEGARIYAQNAIREKNQALNYLRMASRIDAVAQRLETAIRTNDMSKAMGNVVKGMSSALKSMDVEKISKTMDAFEKQFEDMDVRAGYMENSMNASTASATPEDQVDSLISEVADEHQLDLSFALDDAGAVSTKVPQEQKQSE----GKED-LASRLDALRR 203
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GWE3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 8.170e-56
Identity = 116/206 (56.31%), Postives = 148/206 (71.84%), Query Frame = 3 
Query:  306 GNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAPAGEEDELANRLAALR 923
            G K +LE+ELINL++TSKQ QR A KC +NE  A  K+++AIK GN EGA+I+ Q+AIREKNQ+LNCLR++SRIDAVASRLETA+RM  +++SM             MDVE++++TMD FE QFED+DVR  YM++AM  +TA +TP +QVD LI MVADE  LELGE  ++AGPV  K P +P  A    A   D+L  RLA LR
Sbjct:    5 GKKPTLEDELINLKITSKQMQRQAKKCERNEKAAIEKVKKAIKQGNKEGAQIHAQDAIREKNQALNCLRMASRIDAVASRLETAVRMNSLSQSMTGVVRGMSTGLQSMDVEKMAQTMDKFESQFEDLDVRTQYMDDAMNSTTASTTPADQVDSLIHMVADENELELGEAFNEAGPVGKKTP-QPTVAEETKA--TDDLEARLANLR 207
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Snf7 (family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1R3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.250e-55
Identity = 118/208 (56.73%), Postives = 144/208 (69.23%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAPAGEEDELANRLAALRK 926
            MGNK SLE+ L+NLRLTSKQ  RG+ KC  +E  A+ KL++AI++ N+EGARIY QNAIREK Q+LN LRLSSRIDAVA+RLE+AIRMKQV  +M             MDVE+++K MD FE+QFED DVR GY+E A+  +TA +TPQE VD LIQ  AD   LELG  LD+AG VS+ +PA  A A        + L  R  ALRK
Sbjct:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQA-------TNNLEQRFEALRK 201
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAK8_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.970e-55
Identity = 124/213 (58.22%), Postives = 146/213 (68.54%), Query Frame = 3 
Query:  303 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVS------NKVPAKPAAAPAAPAGEEDELANRLAALR 923
            MG K SLE++LI  RLTSKQ  R A KC KN    K KL++AI+ GN+EGARIY QN IREKNQSLN LRL SRIDAVASRLETAIRM+ VNK+M             M+VE+I+KTM  FE+ FEDMDVR+GYME+ M  +T+M+TP E VD L++MVADEAGL+L  QLD  G  S       +  A PAA PA+      EL  RLAALR
Sbjct:    1 MGQKHSLEDDLIQFRLTSKQMARSAKKCDKNMETQKNKLKKAIEQGNMEGARIYAQNVIREKNQSLNFLRLGSRIDAVASRLETAIRMQDVNKAMVMTVKGMSNAMKSMEVEQIAKTMQDFEKTFEDMDVRSGYMESTMDATTSMTTPPEDVDNLMRMVADEAGLQLAGQLDAPGTHSVATAAGQQQTAGPAADPAS------ELEARLAALR 207
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig846.16589.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.450e-11399.04protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2... [more]
Snf7-domain-containing4.440e-7067.31protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Snf7-domain-containing2.100e-6966.99protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical8.340e-6157.97protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical8.620e-6162.64protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical1.160e-6059.62protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical1.070e-5858.65protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Hypothetical8.170e-5656.31protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Snf71.250e-5556.73family protein n=2 Tax=Monodopsidaceae TaxID=42507... [more]
Hypothetical2.970e-5558.22protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig846contigE_fasciculatus_S2_contig846:21277..25085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score356.3
Seed ortholog evalue9.8e-96
Seed eggNOG ortholog2880.D7FUT2
Preferred nameCHMP1A
Model size2552
KEGG koko:K12197,ko:K16230
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005815,GO:0005856,GO:0006323,GO:0006355,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010824,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016363,GO:0016458,GO:0016787,GO:0019058,GO:0019068,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0019941,GO:0021549,GO:0022037,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030117,GO:0030163,GO:0030261,GO:0030496,GO:0030902,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032509,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034399,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042058,GO:0042059,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045177,GO:0045184,GO:0045324,GO:0045786,GO:0045892,GO:0045934,GO:0046605,GO:0046755,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048285,GO:0048475,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070013,GO:0070507,GO:0070727,GO:0070925,GO:0071103,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090169,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:0140096,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1902115,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904896,GO:1904903,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3232@2759
Ec32 ortholog descriptionSnf7 vacuolar protein sorting protein
Ec32 orthologEc-06_000990.1
Cds size627
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842505.1803167-UTR-E_fasciculatus_S2_contig846:21276..215781696842505.1803167-UTR-E_fasciculatus_S2_contig846:21276..21578Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig846 21277..21578 +
1696842505.2255619-UTR-E_fasciculatus_S2_contig846:23462..250851696842505.2255619-UTR-E_fasciculatus_S2_contig846:23462..25085Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig846 23463..25085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842505.194454-CDS-E_fasciculatus_S2_contig846:21578..218481696842505.194454-CDS-E_fasciculatus_S2_contig846:21578..21848Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig846 21579..21848 +
1696842505.208342-CDS-E_fasciculatus_S2_contig846:23105..234621696842505.208342-CDS-E_fasciculatus_S2_contig846:23105..23462Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig846 23106..23462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig846.16589.1prot_E_fasciculatus_S2_contig846.16589.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig846 21579..23462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig846.16589.1

>prot_E_fasciculatus_S2_contig846.16589.1 ID=prot_E_fasciculatus_S2_contig846.16589.1|Name=mRNA_E_fasciculatus_S2_contig846.16589.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=209bp
MGNKVSLENELINLRLTSKQQQRGAIKCTKNENVAKAKLREAIKAGNIEG
ARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEGVVK
GMESALKAMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQE
QVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAPAGEEDELA
NRLAALRK*
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mRNA from alignment at E_fasciculatus_S2_contig846:21277..25085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig846.16589.1 ID=mRNA_E_fasciculatus_S2_contig846.16589.1|Name=mRNA_E_fasciculatus_S2_contig846.16589.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3809bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig846:21277..25085+ (Ectocarpus fasciculatus EfasUO2)
GAGAGCCGGAGCGACAACATTACAGCTAATACCTCCCGAGAATAGGCACG
CCACGCGTCCTATTGTTCAAGGCTTGAGCTTCACAACCGCTGAAGAGAAC
GAAATAAATCTGCGTGCATCGGCGCGGCGGACGAAAACAGGCAACAGGAG
GGAACGCGGTGCAACACAACAACGCCCTACGGGACGGGAGGAAACCCAAC
ACGGAAGGAACACTTCAACTCCTCTGTCGAAGAGAACGCCACCCGCTACC
CCAGAGCAACCTCCTCTGAGAGTAAGGAAGGCGTGCACCCGAAGCAGCAG
TCATGGGAAACAAGGTCTCTCTGGAAAATGAACTCATCAACCTGAGGCTG
ACCTCCAAGCAGCAGCAGAGAGGCGCCATCAAGTGCACCAAGAACGAGAA
CGTCGCCAAGGCCAAGTTGCGAGAGGCAATCAAGGCCGGCAACATCGAGG
GAGCCCGCATCTACGGCCAGAACGCGATTCGAGAAAAGAATCAAAGTTTA
AATTGTCTACGTCTAAGTAGTCGGATAGATGCCGTGGCGTCGCGGCTGGA
GACAGCGATCCGGATGAAGCAGGTGACCTTGGTGACATTTTTCGATTTTC
CTCACTGAGCACGTGCGTACAGAGTACACAGCATCAGTGTACTTACTCCC
TAGTGTAGGGTGTGCTCCTGGTTCCCGCTGAATGAGCGTACAGCTCCGCA
GAAACAGCCTGCGGGTCGTTCGCTTCTTTCATTGTACAGCTTCCGGCAGT
AATTAAATTTTAAACTGCTGTGCTCCAACCCAAACACTACACTGCCGTCT
TCATGACTTTGTTCCCGCACGAAGACTTGTGGGTGAACATTCCTCTGCGC
CCGAACAGAGACTACTACTGCTGTAGTGTAATGCGTTTGGTCCCCGTTAT
TTCTATGCTATTTCTGGGATGGGCGGGGAGCTCTCTGTAAATACCTTTTA
TAGGCGTCGTGGGCTCCACATGTCTATTTGTCTGTCGGAAGGAGACGACC
CGTACACGTTAGTTTACAAAGATGACGACTTCACCCACATAGTAGAACGC
CCGGAACGTTCTTCGTAGGCACGAAACGGAATGGAATCAATGCTTAACCC
TCGTAGTACTGGAAGCCCTTTTGGGGACACTTTGGGGACACACAACTCAA
ATGCCTATTTACCGCACCGTAGTCACCCTAGGCACCGCTGTGTCAAACGC
ACGTGAGAACCCTTGGTCTATCGTGCTTGGCTGAGGTAGTATGCTGTGGG
AGATGCTGTGCGATGCCTCTCCTCGGCCTCTGGCTTGCTGTCACCGTCTC
CCAAGCCGCGTGTCCCCAAAGTGGTAAAACTGTACATCGCCTAGAACTGG
AAAAATTCGTTGACTTGGCTTCAGTATGAAAAGTGTCCCCACGTGTTTTG
GGACACTTTTCATACTGAAGCCGAGTCACCCGTTGTCTGGCAAGCAGCGG
AGATTCTTTGGAGGGACTGTAGCTCCTCGACCAATGGCTGACAAGCATTT
CTGCGTCATTTTTTTTTGCGGCGGGACTGGGTACTAGGAGGGTTAAAAGA
ACAGAGAGAGTGGTGATTCCACACACTGCGTAGAATTGTAGGGTGCGGCC
TTATTAGGAAAAACGCTCCATCCATTGCTGCCGGGAAAACAGAAAGGCAG
GCCCAATCGCGCACTGTCTTTGATGTTTCTAGAGTGAAAAGTTGCCACAC
GTGTGCGCGCCGACAACTTTCGAACGGCAACGATTCAGTGCTATTTGCAC
AAGCAGGTAGGGCACTCACGCCACACTCGTAGCTCAACACCCGGAACCGC
ATTCCACACCCTTAATCGATGCGCGCTAGGTAAACAAGTCGATGGAGGGG
GTGGTTAAGGGCATGGAGTCGGCCCTCAAGGCAATGGACGTCGAGCGCAT
CTCGAAAACCATGGACAGCTTCGAGCAGCAGTTCGAAGACATGGATGTAC
GGGCGGGGTACATGGAGAACGCCATGGGCGACTCAACGGCCATGTCGACG
CCCCAGGAGCAAGTGGATGGCCTCATCCAGATGGTAGCCGATGAGGCTGG
CTTAGAGCTGGGTGAACAGCTGGACGACGCTGGCCCTGTGTCTAACAAGG
TGCCCGCCAAGCCGGCTGCTGCACCGGCGGCCCCGGCTGGCGAGGAGGAT
GAGCTGGCCAATAGGTTGGCCGCCTTGCGCAAATGAGAAAGCGGCTCGTT
TGCATTGATTGATAGGGCAGCCATCCGTTGCGTATGGGGCGGTTGGAGTG
TTGTTTCATGTTGGCAGCATTTGCAAAGGCTAGCCCTTTGCCACTTGCTG
TAATCAGATTTTTAGCTGGAGCCACACCTCGCTGTCTGTGGCCTAACAAC
GTTAGTTGTGGTCCGCGGTTGGTGAGGCTTCGCTGCGGGCTGCATACGTT
TGTGGTAGAGTGGACCGGTATCTCTTTTGCGGGAAGACACGAGATGGACG
ATAGATAGGCTCCTACAGCAGACTTGTATGCACCACAATCGTGCGAGGTG
CGTATTCCTTCTCTTGTTTTCTATCACGTTGAAAGAGATTCAACACTGCT
GGTGTGGCAGTGTAATAAGCCACAGGACGTGTCCGGTTTTCGTTGTCTCA
TTGTCTCTTAAGTAACCCGCTGAGGCATCGTTGTTTATATATAGTAAGCT
TTGTGATTAGGGACTGCCAGTTGCTGACATTTGAATTCGAGAGGTCGGAG
GACCCTGCCTGCTGCAGCTCACGAGTTGAACGGTTGTTCAAGTAGAGTAG
TTTGGTCTGTGGAACAGGTGGACCCGACAAACGAGCAATGAAACTCACAG
GTCCTGCCCCCGTGTAAATGATCTTCTTGTCTTACGGATAAGAAACTCCA
CCAAACGTATTTTGTGTTTACGACTACGACGACAGTTATATTTCGTTCAA
TGTTGACACGGAGTATCCTGTATTGCCTCCGGCCTTTTTTTTGTGTGTGT
GCTTGTCTGCTGACAGGCCGTTGTCTTGGCCGTCGAGTCAAATTGAGCCT
ACCAGAGTGTATGCGCCCTGTTTTGTCATGCGTTTTTTCGGTGTTGAGAC
CACAAGTCGCTTGAAATCGCGGCAAGATGCCCATGTTTCATGTCTCTCGA
TGGTTGACATCTGCACACCTTTAGTCGTGAATCTGAGTCAAGGGCGATTG
AGTTTTTGTTGCCAAAATCACACCGCCTTGTTAAAGCGTGTCAAAGCGTG
TCGTTTGCACCCGTAGATTTTACGCTCTTGGAGCTTCAGAGCCCTCTACT
TGTGGTCCGTTACGAAGACGCTGCCCCTCTTTCCTGCCCATAGAGCAAGC
ACACGCCCAGCCGCCCAGGCACCCGCTCTGCAGATACACACATGGTAGCA
TCAAACCCCAAACCCCTTAAGAAGTTTTCGGCCACCGCGGGCTAGAGCAT
GAAGCAGATCGTGCCCGCTCGACAACGACACCCACGGGTGTGCATAGGAA
AATTGTTCGTTAGGCAAGTTGCTAGTTGGTGCCTCTGGCTGCTCGCTCTG
TTCCTTTTTTCACGCACATCCGGGGCGAGAGACAGCGAAGTAGGCACGGC
AGAACCATCAAGCGGCTTGGTAGGCATGAAGGGCAGGGAGGGACTCAGTG
AGGGTAGTCTAAAAGACCCAACATGATTGTCTGTAGGCCTGGAGATTGGC
GACAGAAGAAAAAAAGCTGTGTGCTACAGCAACAGGAGGAGCGTTTCTCT
TTCTAAACAGTTCGTGGTTTGAAGGGACAAACACCCGTGATTTCGTGCGA
GCTCTGTGATTCGATCGGTTTCACCACGACGAGACGGGAATGAACAAGGC
ATTACGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig846:21277..25085+

>mRNA_E_fasciculatus_S2_contig846.16589.1 ID=mRNA_E_fasciculatus_S2_contig846.16589.1|Name=mRNA_E_fasciculatus_S2_contig846.16589.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=627bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig846:21277..25085+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAAACAAGGTCTCTCTGGAAAATGAACTCATCAACCTGAGGCTGAC
CTCCAAGCAGCAGCAGAGAGGCGCCATCAAGTGCACCAAGAACGAGAACG
TCGCCAAGGCCAAGTTGCGAGAGGCAATCAAGGCCGGCAACATCGAGGGA
GCCCGCATCTACGGCCAGAACGCGATTCGAGAAAAGAATCAAAGTTTAAA
TTGTCTACGTCTAAGTAGTCGGATAGATGCCGTGGCGTCGCGGCTGGAGA
CAGCGATCCGGATGAAGCAGGTAAACAAGTCGATGGAGGGGGTGGTTAAG
GGCATGGAGTCGGCCCTCAAGGCAATGGACGTCGAGCGCATCTCGAAAAC
CATGGACAGCTTCGAGCAGCAGTTCGAAGACATGGATGTACGGGCGGGGT
ACATGGAGAACGCCATGGGCGACTCAACGGCCATGTCGACGCCCCAGGAG
CAAGTGGATGGCCTCATCCAGATGGTAGCCGATGAGGCTGGCTTAGAGCT
GGGTGAACAGCTGGACGACGCTGGCCCTGTGTCTAACAAGGTGCCCGCCA
AGCCGGCTGCTGCACCGGCGGCCCCGGCTGGCGAGGAGGATGAGCTGGCC
AATAGGTTGGCCGCCTTGCGCAAATGA
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