mRNA_E_fasciculatus_S2_contig8458.16586.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8458.16586.1
Unique NamemRNA_E_fasciculatus_S2_contig8458.16586.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: rho-related (protein rac1C-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0JJS4_DIACI)

HSP 1 Score: 140 bits (353), Expect = 2.310e-42
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVS 195
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVS
Sbjct:    5 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVS 69
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BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: ras-related (C3 botulinum toxin substrate 1-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EEC1D2)

HSP 1 Score: 140 bits (352), Expect = 9.570e-42
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVS 195
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTVS
Sbjct:   13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVS 77
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BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: Uncharacterized (protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6BHW8_ELECQ)

HSP 1 Score: 139 bits (349), Expect = 1.460e-41
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVS 195
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTV+
Sbjct:   21 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVT 85
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BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060YX13_ONCMY)

HSP 1 Score: 137 bits (346), Expect = 3.410e-41
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVSSV 201
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSYPQTV+ +
Sbjct:    8 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTVTHI 74
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BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: Ras-related (C3 botulinum toxin substrate 1-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B5ASA7_9TELE)

HSP 1 Score: 138 bits (348), Expect = 4.140e-41
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTV 192
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTV
Sbjct:   13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTV 76
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: Ras-related (C3 botulinum toxin substrate 1 (Rho family, small GTP binding protein Rac1) (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7WLL1_9TELE)

HSP 1 Score: 138 bits (348), Expect = 5.790e-41
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTV 192
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTV
Sbjct:   20 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTV 83
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: Uncharacterized (protein n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183GZP5_9BILA)

HSP 1 Score: 141 bits (355), Expect = 6.040e-41
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVSSV 201
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVS +
Sbjct:   10 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTVSEL 76
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: Rac (family small GTPase 3a n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2GVI2_CYPCA)

HSP 1 Score: 138 bits (348), Expect = 6.740e-41
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTV 192
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTV
Sbjct:   12 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTV 75
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: Ras-related (C3 botulinum toxin substrate 1 isoform Rac1b variant (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=Q59FQ0_HUMAN)

HSP 1 Score: 138 bits (348), Expect = 1.160e-40
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTV 192
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTV
Sbjct:   75 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTV 138
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Match: ras-related (C3 botulinum toxin substrate 1-like n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAF306F)

HSP 1 Score: 138 bits (348), Expect = 1.160e-40
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTV 192
            AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTV
Sbjct:   13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTV 76
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8458.16586.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
rho-related2.310e-42100.00protein rac1C-like n=1 Tax=Diaphorina citri TaxID=... [more]
ras-related9.570e-4298.46C3 botulinum toxin substrate 1-like n=1 Tax=Anarrh... [more]
Uncharacterized1.460e-4196.92protein n=1 Tax=Eleutherodactylus coqui TaxID=5706... [more]
Uncharacterized3.410e-4192.54protein (Fragment) n=1 Tax=Oncorhynchus mykiss Tax... [more]
Ras-related4.140e-4198.44C3 botulinum toxin substrate 1-like n=1 Tax=Stegas... [more]
Ras-related5.790e-4198.44C3 botulinum toxin substrate 1 (Rho family, small ... [more]
Uncharacterized6.040e-4197.01protein n=1 Tax=Onchocerca flexuosa TaxID=387005 R... [more]
Rac6.740e-4198.44family small GTPase 3a n=1 Tax=Cyprinus carpio Tax... [more]
Ras-related1.160e-4098.44C3 botulinum toxin substrate 1 isoform Rac1b varia... [more]
ras-related1.160e-4098.44C3 botulinum toxin substrate 1-like n=1 Tax=Oncorh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8458contigE_fasciculatus_S2_contig8458:2509..3381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score140.6
Seed ortholog evalue2.7e-31
Seed eggNOG ortholog181119.XP_005530684.1
Model size201
KEGG koko:K04392
KEGG Pathwayko04010,ko04013,ko04014,ko04015,ko04024,ko04062,ko04071,ko04145,ko04151,ko04310,ko04360,ko04370,ko04380,ko04510,ko04520,ko04530,ko04620,ko04650,ko04662,ko04664,ko04666,ko04670,ko04722,ko04810,ko04932,ko04933,ko04972,ko05014,ko05100,ko05120,ko05131,ko05132,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05231,ko05416,ko05418,map04010,map04013,map04014,map04015,map04024,map04062,map04071,map04145,map04151,map04310,map04360,map04370,map04380,map04510,map04520,map04530,map04620,map04650,map04662,map04664,map04666,map04670,map04722,map04810,map04932,map04933,map04972,map05014,map05100,map05120,map05131,map05132,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05231,map05416,map05418
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ras-related C3 botulinum toxin substrate 1
EggNOG OGs38BJN@33154,3BBFA@33208,3E4G0@33213,48R5E@7711,49MRD@7742,COG1100@1,KOG0393@2759
Cds size201
COG Functional cat.U
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842504.6253707-CDS-E_fasciculatus_S2_contig8458:2508..26231696842504.6253707-CDS-E_fasciculatus_S2_contig8458:2508..2623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8458 2509..2623 -
1696842504.6425524-CDS-E_fasciculatus_S2_contig8458:3295..33811696842504.6425524-CDS-E_fasciculatus_S2_contig8458:3295..3381Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8458 3296..3381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8458.16586.1prot_E_fasciculatus_S2_contig8458.16586.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8458 2509..3381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8458.16586.1

>prot_E_fasciculatus_S2_contig8458.16586.1 ID=prot_E_fasciculatus_S2_contig8458.16586.1|Name=mRNA_E_fasciculatus_S2_contig8458.16586.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE
DYDRLRPLSYPQTVSSV
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mRNA from alignment at E_fasciculatus_S2_contig8458:2509..3381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8458.16586.1 ID=mRNA_E_fasciculatus_S2_contig8458.16586.1|Name=mRNA_E_fasciculatus_S2_contig8458.16586.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=873bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8458:2509..3381- (Ectocarpus fasciculatus EfasUO2)
GCGGTTGGTAAGACCTGTCTGCTGATCTCCTACACGACAAACGCATTTCC
GGGAGAGTACATCCCAACGGTGTTCGACAACTATAGGTGGGTCTTGACGA
TTTTGCCAACGACTTGAGTGCCTGCTGTGTGTCTCTCTCTCTATGTACAA
ATCTATTCCGCGTGTAGTCACCCCCCTTTTTGCATCCAACGTGCCACCCA
TATCGTCGCCCTAATGGTAGAGAAAGCAGGGGGCAGCAGGCGTGCCTGTG
CGACAAAAAAGTCGGGCCTTGTCGGCTTTGGTAGTCGGCTGACGAAAGAG
AGGAAAAAAGTCAGGGTGGAAGCTGTGAAGCTTTTGAACTGCTCGCGAAG
CTGTTGCGGCTCTGTTGACGGGCGACACACGCCCGCTGCTGTGCATGTCT
GCTTTGCTCTTTTCCCTGGTCTGCCGGCAAAGACCACTTGTCGAATTCTC
GTGGAGTCGATCAGTTCCTCCGTCAACCTCTGTCCATCGCTCTGTGCTGC
TGTAACTCACTGGCTTGGTACACCCTTTCGACCCGACCTGACAAGGGCCC
GATATGGGAACCTTATAAAAATTTCACGCGGCCGGCGCGGGTGCCGCGTG
AGGTTTTCGTCTGTTTAGCCTAGGAAACACCGAGGTTTTAAAGCAATTCT
GAATCGATTTGTCGGCTTTTTTTGGTGGAAGCTCACGCAACAATTCTTTA
GCTCTTCTGTGTAGCTGAGTTAAGTTCGTTCCCTTCTTGTTCGCCCATGC
AACATCAGCGCTAACGTGATGGTTGATGGGAAGCCGATTAACCTGGGGCT
TTGGGATACAGCGGGGCAGGAGGATTACGATCGTCTCCGGCCTCTCAGCT
ATCCCCAAACGGTAAGTTCAGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8458:2509..3381-

>mRNA_E_fasciculatus_S2_contig8458.16586.1 ID=mRNA_E_fasciculatus_S2_contig8458.16586.1|Name=mRNA_E_fasciculatus_S2_contig8458.16586.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8458:2509..3381- (Ectocarpus fasciculatus EfasUO2)
GCGGTTGGTAAGACCTGTCTGCTGATCTCCTACACGACAAACGCATTTCC
GGGAGAGTACATCCCAACGGTGTTCGACAACTATAGCGCTAACGTGATGG
TTGATGGGAAGCCGATTAACCTGGGGCTTTGGGATACAGCGGGGCAGGAG
GATTACGATCGTCTCCGGCCTCTCAGCTATCCCCAAACGGTAAGTTCAGT
C
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