mRNA_E_fasciculatus_S2_contig8444.16576.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8444.16576.1
Unique NamemRNA_E_fasciculatus_S2_contig8444.16576.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16576.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 2.670e-5
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  163 MSASATAAAAPGREGDHAEMEQEPVELSEAYVQSL 267
            MSASATAA A  REGDHAE EQEPVELSEAYV SL
Sbjct:    1 MSASATAAVA-AREGDHAEQEQEPVELSEAYVHSL 34
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8444.16576.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Conserved2.670e-585.71oligomeric Golgi complex subunit 8 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8444contigE_fasciculatus_S2_contig8444:3823..4089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size269
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842503.6236622-UTR-E_fasciculatus_S2_contig8444:3822..39841696842503.6236622-UTR-E_fasciculatus_S2_contig8444:3822..3984Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8444 3823..3984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842503.6370199-CDS-E_fasciculatus_S2_contig8444:3984..40891696842503.6370199-CDS-E_fasciculatus_S2_contig8444:3984..4089Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8444 3985..4089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8444.16576.1prot_E_fasciculatus_S2_contig8444.16576.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8444 3985..4089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8444.16576.1

>prot_E_fasciculatus_S2_contig8444.16576.1 ID=prot_E_fasciculatus_S2_contig8444.16576.1|Name=mRNA_E_fasciculatus_S2_contig8444.16576.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=35bp
MSASATAAAAPGREGDHAEMEQEPVELSEAYVQSL
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mRNA from alignment at E_fasciculatus_S2_contig8444:3823..4089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8444.16576.1 ID=mRNA_E_fasciculatus_S2_contig8444.16576.1|Name=mRNA_E_fasciculatus_S2_contig8444.16576.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8444:3823..4089+ (Ectocarpus fasciculatus EfasUO2)
AAAGAGACCCTGCCACCGCCGTACGTGCCCTTTGGTTGAGACTTTCCTCT
GTGTGCCAGGCTGCGGAACGGCCCTCTGCTGCTGCTGCAGTAACGGACTG
AGGGTTGCGTCAAAAGAAGACTGAGCCTACGCCATTTCAAAACCTCTACT
ACGCTCGAAAGAATGAGTGCTTCCGCTACTGCAGCAGCAGCACCAGGCAG
GGAGGGCGACCATGCGGAAATGGAACAGGAGCCGGTGGAGCTCTCCGAGG
CCTACGTCCAATCGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8444:3823..4089+

>mRNA_E_fasciculatus_S2_contig8444.16576.1 ID=mRNA_E_fasciculatus_S2_contig8444.16576.1|Name=mRNA_E_fasciculatus_S2_contig8444.16576.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=105bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8444:3823..4089+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTGCTTCCGCTACTGCAGCAGCAGCACCAGGCAGGGAGGGCGACCA
TGCGGAAATGGAACAGGAGCCGGTGGAGCTCTCCGAGGCCTACGTCCAAT
CGCTG
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