mRNA_E_fasciculatus_S2_contig8444.16575.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C1_ECTSI) HSP 1 Score: 159 bits (403), Expect = 1.060e-36 Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 3
Query: 2073 MKGNAPWTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTK 2303
MKGNAPWTAEENDRLREA SRHS KHWKQIA SVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTK
Sbjct: 1 MKGNAPWTAEENDRLREAASRHSLKHWKQIARSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTK 77
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: MYB (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ5_9PHAE) HSP 1 Score: 146 bits (368), Expect = 4.350e-35 Identity = 70/77 (90.91%), Postives = 70/77 (90.91%), Query Frame = 3
Query: 2073 MKGNAPWTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTK 2303
MKGNAPWTAEENDRLREA RHS KHWKQIA SVPGRTAVQCLQHYKHVLHPGIERGSWTPAE VMNLVAIHGTK
Sbjct: 1 MKGNAPWTAEENDRLREAARRHSLKHWKQIARSVPGRTAVQCLQHYKHVLHPGIERGSWTPAE---VMNLVAIHGTK 74
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Uncharacterized (protein n=4 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JJM4_PAPSO) HSP 1 Score: 95.5 bits (236), Expect = 1.090e-16 Identity = 42/86 (48.84%), Postives = 63/86 (73.26%), Query Frame = 3
Query: 2091 WTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGT-KWSKIEAEMPRRLGK 2345
WTAEE+D LR +V + ++WK IA+ +P +TAVQCL +K VL+P + +G+WTP ED++++ LV+ +G KWS +E MP R+GK
Sbjct: 39 WTAEEDDYLRRSVEAYRGQNWKIIASGLPDKTAVQCLNRWKKVLNPNVNKGTWTPEEDRKLIELVSEYGPIKWSVVEKSMPGRMGK 124
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1NZH0_9ALVE) HSP 1 Score: 86.3 bits (212), Expect = 6.950e-16 Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 3
Query: 2085 APWTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGT-KWSKIEAEMPRRLG 2342
A WT EE++ LRE+V + K WK+IAT +PGR+ VQCL + VL P + RG+WT ED + LVA+HG KWS I + RLG
Sbjct: 73 AEWTQEEDEALRESVRVNGGKSWKRIATFLPGRSDVQCLNRWHTVLKPTLVRGTWTQEEDDVLRELVAVHGAAKWSSIAKMLNERLG 159
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKM4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.370e-15 Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 3
Query: 2091 WTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTK-WSKIEAEMPRRLGK 2345
WT E+ LR AV + K+WK+IA+ +P RT +QCL ++ VL PGI +G+WTP ED V+ LV +HG K WS I ++ RLGK
Sbjct: 26 WTESEDALLRLAVEQFGGKNWKKIASQLPDRTDIQCLHRWQKVLKPGIIKGAWTPKEDNTVIELVRLHGQKKWSFIAKQLKGRLGK 111
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQI5_PYTOL) HSP 1 Score: 87.0 bits (214), Expect = 5.170e-15 Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 3
Query: 2091 WTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIE--RGSWTPAEDKQVMNLVAIHGTKWSKIEAEMPRRLGK 2345
WT E ++LR V H K W IA+ +PGRT +QC QH+ VL P I RGSWTP EDK + V GTKW++I ++P RLGK
Sbjct: 178 WTHAEAEKLRAVVGAHGAKDWFFIASQLPGRTDLQCRQHWFRVLQPSITKGRGSWTPEEDKILCERVKTIGTKWTEIAQDLPGRLGK 264
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTA9_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 8.180e-15 Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 3
Query: 2103 ENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTKWSKIEAEMPRRLGK 2345
E+D+LR+AVSRH ++WK IA VPGR QCLQ + VL PG+ +G W P ED + LVA W ++ +P R K
Sbjct: 1 EDDKLRDAVSRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRKNWGQVATRIPGRTSK 81
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Transcription (factor MYB3R-5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GH14_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.660e-14 Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 3
Query: 2091 WTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTK--WSKIEAEMPRRLGK 2345
WTAEE+++LR+AV ++ +HWK IAT VPGRT VQCLQ + VL PG+ +G+WT ED + LV + WS I +P R K
Sbjct: 378 WTAEEDEKLRKAVEQYGPRHWKDIATFVPGRTHVQCLQRWNKVLKPGLRKGAWTEEEDVTLTQLVETSDDQPNWSDIAEHIPGRSAK 464
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Hypothetical (protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UZU2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 5.720e-14 Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 3
Query: 2091 WTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGTK-WSKIEAEMPRRLGK 2345
WT E+ LR AV + K+WK+IA +P RT +QCL ++ VL PGI +G+WTP ED V+ LV +HG K WS I ++ RLGK
Sbjct: 311 WTESEDALLRLAVEQFGGKNWKKIAAQLPDRTDIQCLHRWQKVLKPGIIKGAWTPKEDNTVIELVRLHGQKKWSFIAKQLKGRLGK 396
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EAJ6_VITBC) HSP 1 Score: 86.3 bits (212), Expect = 1.060e-13 Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 3
Query: 2085 APWTAEENDRLREAVSRHSRKHWKQIATSVPGRTAVQCLQHYKHVLHPGIERGSWTPAEDKQVMNLVAIHGT-KWSKIEAEMPRRLG 2342
A WT EE++ LRE+V + K WK+IAT +PGR+ VQCL + VL P + RG+WT ED + LVA+HG KWS I + RLG
Sbjct: 73 AEWTQEEDEALRESVRVNGGKSWKRIATFLPGRSDVQCLNRWHTVLKPTLVRGTWTQEEDDVLRELVAVHGAAKWSSIAKMLNERLG 159 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8444.16575.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8444.16575.1 >prot_E_fasciculatus_S2_contig8444.16575.1 ID=prot_E_fasciculatus_S2_contig8444.16575.1|Name=mRNA_E_fasciculatus_S2_contig8444.16575.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=636bp MPEVGDTEVVAVATAPAATAGLASSAALRLAAGLPADGTGEAVTPYAEVYback to top mRNA from alignment at E_fasciculatus_S2_contig8444:181..3011- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8444.16575.1 ID=mRNA_E_fasciculatus_S2_contig8444.16575.1|Name=mRNA_E_fasciculatus_S2_contig8444.16575.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2831bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8444:181..3011- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8444:181..3011- >mRNA_E_fasciculatus_S2_contig8444.16575.1 ID=mRNA_E_fasciculatus_S2_contig8444.16575.1|Name=mRNA_E_fasciculatus_S2_contig8444.16575.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1908bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8444:181..3011- (Ectocarpus fasciculatus EfasUO2)back to top |