mRNA_E_fasciculatus_S2_contig844.16573.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S2_9PHAE) HSP 1 Score: 379 bits (974), Expect = 2.140e-131 Identity = 199/242 (82.23%), Postives = 207/242 (85.54%), Query Frame = 1
Query: 1 MACEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGE-SSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGSGQPEAVQPTISTTGDAMDVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQSTRREQ 723
MACEARIIRALRTMEYPGL H+SGSA TGRSLV QPHELAKIVGWIEDRK+RGL ISDREPLRTPGPKWE AFFSYLQEMGCPND KATGGG GE S +AVLRGVSWLVTEAVA DFEDNG +YKAAARELL A SPQ MGG R SS+ S S QPE Q TIST GDAMD+G G E+R FREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQ+EVNGVI LAQSTRREQ
Sbjct: 1 MACEARIIRALRTMEYPGLDHISGSAATGRSLVAQPHELAKIVGWIEDRKIRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDFKATGGGGGEPSGAAVLRGVSWLVTEAVAYDFEDNGKEYKAAARELLLAKTRFSPQAMGGARGGSSSDPS----SVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQ 238
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3K0_ECTSI) HSP 1 Score: 368 bits (944), Expect = 4.820e-127 Identity = 191/229 (83.41%), Postives = 201/229 (87.77%), Query Frame = 1
Query: 40 MEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGE-SSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGSGQPEAVQPTISTTGDAMDVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQSTRREQ 723
MEYPGL HVSGSA +GRSLV QPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWE FSYLQEMGCPND KATGGG GE SS+AVLRGVSWLVTEAVACDF+DNG +YKAAARELL AN SPQ +GG R SS++HGS QPE QPTIST G AMD+GPGGE+R FREQLRGFTAGVETGDEACDSVATVLRMLYLSDLR+LQDEVNGVIALAQSTRREQ
Sbjct: 1 MEYPGLDHVSGSAASGRSLVAQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEEVLFSYLQEMGCPNDFKATGGGGGEPSSAAVLRGVSWLVTEAVACDFDDNGKEYKAAARELL-ANPRCSPQAVGGAR----GGSSSDHGSVQPEPAQPTISTAGVAMDIGPGGEHRIFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRNLQDEVNGVIALAQSTRREQ 224
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2A7_HETAK) HSP 1 Score: 97.8 bits (242), Expect = 1.220e-20 Identity = 81/272 (29.78%), Postives = 115/272 (42.28%), Query Frame = 1
Query: 7 CEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPND-LKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNH------------------GSGQPEAVQPTISTTGDAMDVGPGG---------ENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS-TRREQNNTA 735
C I R+L + YP +P EL K+V W+EDRK+R +I +R LR PGP W +AF YL+++ CP + A G G S LRG+ WL+ +A+A ++ED G+ Y A A G Q E + T+ A+ V G E+ + R L F G T D D A +L+MLYL+DLR+LQ+ +N ++ AQ T + NTA
Sbjct: 20 CLENIERSLTALGYPAKDSFDHE---------EPVELTKLVAWLEDRKIRLYSIEERTALRNPGPAWGSAFKKYLEDLECPQSYIHAEGRLEGSS----LRGLRWLLHKAIAYEYEDKGSTYNARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPLAVVAELCRRCGVRQSEDLLSTLRMLHLAIKVKYGSLEELANDQKEDIQQRLNLDNFPLGFSTEDPLLDKAAKLLKMLYLTDLRNLQNSINDILVTAQEFTANPKTNTA 278
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4J5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 6.340e-19 Identity = 79/263 (30.04%), Postives = 113/263 (42.97%), Query Frame = 1
Query: 1 MACEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYL--QEMGCPN-DLKATGGGAGESSSAVLRG-VSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGSGQPEAVQPTISTTGDAMD------------------VGP-----GGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
MA EA R LR + YP + +E+ +V ++EDRKVR L + R PLRT GP W AF SY+ + CP A GE A L V WL+ A+ ++ED AAA + S + S+ G + +++++ A+ P + G +D V P GG R + G + G+ TGD A D V R+LY+SDLR LQD VN ++ Q+
Sbjct: 1 MAEEASTRRRLRALAYPRWREFR---------LDDDNEVVLLVAFLEDRKVRALPMEARAPLRTAGPGWHDAFLSYVGGDPLNCPLLSAAAIEAAGGEVDRATLGACVMWLIGHAIGVEYEDVAEAANAAAVRVASDSGSAPASGASGGGEEGADAAAVR------AALTPIAALLGVRVDGRAPAELTEAVRRAVQRKVVPAVEAAGGAGRTLPLTMDGISGGLLTGDAALDRAIAVARLLYVSDLRQLQDSVNELLVSVQA 248
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K580_TETUR) HSP 1 Score: 80.1 bits (196), Expect = 2.480e-14 Identity = 69/229 (30.13%), Postives = 102/229 (44.54%), Query Frame = 1
Query: 97 VTQPHELAKIVGWIEDRKVRGLAISDREPLRT-PGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSS-NSSSTNHGSGQ----------PE------AVQPTIST--TGDAM-----DVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
V + +V W+ED+K+R I +R LR P WE AF YL+ + CP D+K VL WL++ AV D+ DN YK +L+ AS+ D+ N+ HG G+ P+ A+ I T T DA+ ++ GE + F L G + D+ A VLR+LY++DLR LQ+++N VI Q+
Sbjct: 19 VEDENSFRNLVAWLEDQKIRHYPIEERSGLRKISSPDWENAFKKYLESLKCPFDVK--------DRKLVL---DWLISTAVRLDYNDNFDKYKDVTGKLVKNQASNPQMVQANPLDNLDFNAKEFKHGIGELAKLLKVPQHPDHLITLKAINHLIKTRLTADALQSEKEELETSGE-KSFT--LENSILGFDVKDQNLSRAAKVLRILYINDLRDLQNKINQVIVSIQA 233
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XVR1_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 9.530e-13 Identity = 68/260 (26.15%), Postives = 113/260 (43.46%), Query Frame = 1
Query: 31 LRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPLR-TPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAA----RELLSANASSSPQTMGGTRDHSSNSSSTNH---------GSGQPEAVQPTISTTGDAM-----DVGPGGENRKFREQLRG-----FTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQSTRREQNNTAA 738
L+ ++YP ++LV A ++ W+E+ KVR +I DR+ L T P W+ F Y++++ CP L+A+ S +AVL WL++ A++ +++D + AA R + ++S Q + D S + H + E++Q + D + D R+ QL F G TGD+ D AT+LRMLY+ DLR LQ ++ + Q+ AA
Sbjct: 8 LKALKYPK---------PSKNLVEDDVNFASLIVWLENTKVRQYSIEDRKALSDTRNPSWDGVFRKYVKDVQCPIALEAS------SKAAVL---DWLLSYAISLEYQDQADKFNTAALSQSRHKPALSSSQQEQHVYTDIDDPQTSEAIQHLLKQLQLVDTNAPMESLQAARNMVSDQLLPALEDSQLSSAAREAATQLSHLDVDKFPLGFTTGDKKTDVAATILRMLYIKDLRGLQTIIDETLVNVQNYTANPKTDAA 249
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V6_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 6.730e-11 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 115 LAKIVGWIEDRKVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFED 354
+AK+V W+EDRK+R I R+PLRT G +++AAF SYLQE+ CP + S A++ WL+ EAV C+ ED
Sbjct: 26 VAKLVSWVEDRKIRLWEIEQRKPLRTAGVEFDAAFQSYLQELECP---------VLQPSQALV----WLLHEAVKCELED 92
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Homeobox (prox 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H731_ACACA) HSP 1 Score: 68.2 bits (165), Expect = 3.360e-10 Identity = 62/208 (29.81%), Postives = 93/208 (44.71%), Query Frame = 1
Query: 148 KVRGLAISDREPLRTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELL-SANASSSPQTMGGTRDHSSNSS-----STNHGSGQPE-----AVQPTISTTGDAMDVGPG--------GENRKFREQ--LRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
KVR L + DR+PLR +W + F YL E+G + A G A + WLV A++ ++D+ Y AA+E S + + Q + D++S S + G P AV I+ P GE+ + E+ L F G TGD D ATVLR+LY++DLR LQ ++N ++ Q+
Sbjct: 2 KVRHLKVEDRKPLRLFDAQWPSRFAHYLGELGWTGSVDADGNEAA---------IDWLVRYALSLAYDDHAGLYNEAAQEYKRSRELTHAIQQLNKNTDYTSEEFREAVLSLANVLGLPPHEDTLAVLKAIAHLVQRRFSAPALEEAHRQVGEDARTHEKGVLEKFPLGFSTGDSELDKAATVLRLLYVADLRELQSKINHLLVSVQN 200
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: UPF0568 (protein C14orf166-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SUE4_AUXPR) HSP 1 Score: 68.6 bits (166), Expect = 4.530e-10 Identity = 71/258 (27.52%), Postives = 106/258 (41.09%), Query Frame = 1
Query: 31 LRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKVRGLAISDREPL-RTPGPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKA---AARELLSANASSSPQTMGGTRDHSSNSSS--------TNHGSGQPEAVQPTISTTGDAMDV-------------GPGGENRKFREQ------LRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQST 711
LR ++YPG S + T S+ + +V W+E++K+R I R+ L T W AA+ YL + CP SS + + WL + AV+ ++ D A AA E+ A + S ++ D +S + + T H Q E T+ +D P G R+ L GF G TG D+ AT+LRMLYL DLR LQD V+ + Q++
Sbjct: 8 LRALKYPGAS--SFPSDTRASIEVEAAR--PLVTWLENQKIRHYTIPQRQGLLATSADDWRAAYGQYLTALECPC-----------SSEGLPATLQWLCSRAVSLEYADRNEQLNASTSAAVEVGGAVSDWSEHSLPPFADTASPAVAAAVMRMLRTLH-MDQEEVTPSTVERLSSVLDTQVLPALPGDEDTAAPSGTGRQGVSAAGPIALLAGFPLGFSTGSPLSDAAATILRMLYLRDLRGLQDVVDRELERVQAS 249
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Match: Uncharacterized (protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VLV1_CAPTE) HSP 1 Score: 60.8 bits (146), Expect = 1.920e-7 Identity = 56/218 (25.69%), Postives = 94/218 (43.12%), Query Frame = 1
Query: 100 TQPHELAKIVGWIEDRKVRGLAISDREPLRTP-GPKWEAAFFSYLQEMGCPNDLKATGGGAGESSSAVLRGVSWLVTEAVACDFEDNGTDYKAAARELLSANASSSPQTMGGTRDHSSNSSSTNHGS-----------GQPEAVQPTI--STTGDAM-DVGPGGENRKFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQDEVNGVIALAQS 708
T + K++ W+ED+K+R I DR LR W A YL+++ CP L+A + + + V WL+ AV ++ DN Y+ A+ + S S +P + D S + + + Q +A+ + + DA+ V G + + + G ET D A VLR+LY+ +LR LQ+ N + Q+
Sbjct: 20 TDEEQFRKLMVWLEDQKIRHYKIEDRTALRNVCAGNWNDALKKYLEDISCP--LRA------HNRNEL---VDWLLGYAVRLEYGDNTDKYRTASNNVKSHTKSGNPLDLIDFNDADSKAGILSLAAILELPPHPDHIVQLKAISILVREKLSKDAIASVQKNGIPKPNTIPIEKLSLGFETSDYISQEAAKVLRLLYIRELRDLQNSANEAVVAVQT 226 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig844.16573.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig844.16573.1 >prot_E_fasciculatus_S2_contig844.16573.1 ID=prot_E_fasciculatus_S2_contig844.16573.1|Name=mRNA_E_fasciculatus_S2_contig844.16573.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=247bp MACEARIIRALRTMEYPGLGHVSGSAGTGRSLVTQPHELAKIVGWIEDRKback to top mRNA from alignment at E_fasciculatus_S2_contig844:21654..23620- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig844.16573.1 ID=mRNA_E_fasciculatus_S2_contig844.16573.1|Name=mRNA_E_fasciculatus_S2_contig844.16573.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1967bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig844:21654..23620- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig844:21654..23620- >mRNA_E_fasciculatus_S2_contig844.16573.1 ID=mRNA_E_fasciculatus_S2_contig844.16573.1|Name=mRNA_E_fasciculatus_S2_contig844.16573.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig844:21654..23620- (Ectocarpus fasciculatus EfasUO2)back to top |