mRNA_E_fasciculatus_S2_contig843.16563.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig843.16563.1
Unique NamemRNA_E_fasciculatus_S2_contig843.16563.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig843.16563.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M7_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 7.920e-151
Identity = 203/209 (97.13%), Postives = 206/209 (98.56%), Query Frame = 1
Query:    1 VNKNASDEVFDGGYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKDGFDRLNANRTNYSLGQYPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTFARDSVRRGGGGGEGVLGVRFDLINGREDAGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 627
            VNKNASDEVFDG YSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPK+GFDRLNANRTNYSLGQ+PTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDT ARDSVRRGGGGGEGVLGVRFD+INGRED GARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW
Sbjct:    2 VNKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 210          
BLAST of mRNA_E_fasciculatus_S2_contig843.16563.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3K8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.050e-27
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = 1
Query:    1 VNKNASD-EVFDGGYSPPPSDPR--FSTVTRMELTKSVHTPGYAIRRPKDGFDRLNANRTNYSLGQYPTTELKT-----ATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTFARDSVRRGGGGGEGVLGVRFDLINGREDAGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPER-GAGAPVRSDTVSGRTRPW 627
            ++KNASD +   G    P  DPR  F T    +             R +  FDRL+A++TNY +    T+ L+T      T+ +   HP+ +P+ +Q A+GG     G Y  +  A+++V+RGGGGGEG LGVRF+++       AR    ++TGPR ++N  E      ++ +GD    M  +I+TGK    F  P+  G    +R +    RTRPW
Sbjct:   65 IHKNASDKDSIQGAEGGPYHDPRKVFKTTFASDYHSGASALSEKYVRERPAFDRLSASKTNYEI----TSPLETIPPFKTTSHVLHAHPKTRPQPEQAAIGGWRTSTGEYCTNELAKETVKRGGGGGEGSLGVRFNIVTNEGAPRARETALLQTGPRVSMNKKEPW-RQGSNRFGD--SDMQTNIITGKQHAHFQAPKPLGPADLLRPNEAIARTRPW 275          
BLAST of mRNA_E_fasciculatus_S2_contig843.16563.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F937_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.770e-27
Identity = 78/212 (36.79%), Postives = 107/212 (50.47%), Query Frame = 1
Query:    1 VNKNASDEV-FDGGYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKDGFDRLNANRTNYSLGQY--PTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTFARDSVRRGGGGGEGVLGVRFDLINGREDAGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 627
            ++KNASD+V   GG    P     S         +  +  Y    P   +DR+++ +TNYSLG+Y  P   + T  +    K P D   V Q  +GG    DGSY  +  + DS+ RGGGGGEG LGV+F+++N   D GAR +VAMRTG R ++N  E       D +GD      V+I     +R    P + A A +R D    RTRPW
Sbjct:   68 MDKNASDKVAIQGGGVVQPRQYENSYKAEFHPGTTALSSAYVKEGP--AYDRISSCKTNYSLGEYRPPGPAISTTHSHHPYKMPTD---VQQANIGGWKRSDGSYHCEHESNDSIVRGGGGGEGSLGVQFNIVNNASDPGARDRVAMRTGARVSVNKREPWSAG-CDAYGDPGPDGPVNIFGKARQRPQAPPHQTAQALLRPDHDVLRTRPW 273          
BLAST of mRNA_E_fasciculatus_S2_contig843.16563.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T189_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.100e-26
Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 1
Query:    1 VNKNASDE--VFDGGYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKDGFDRLNANRTNYSLGQYPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTFARDSVRRGGGGGEGVLGVRFDLINGREDAGAR-GKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 627
            V+KNASD+  V D    PP     F++    E  +   T      + +  FDR ++  TNYSLG+ P  E KT T ++   HP  +PRVDQ  +GG    DGSY+L+  A DS++RGGGGG G LG+ F++I G E  G R GK A+  G RRTLN  +         + + PG  Y  + T +D      P +      RS+ V  RTRPW
Sbjct:   49 VDKNASDKEAVIDSTGFPP----CFTSTNTAEFNRDTTTFSRRYVKREPCFDRQSSCATNYSLGEAPF-ETKT-TNDVLFAHPLTKPRVDQGEIGGWKHPDGSYKLEQEAIDSIKRGGGGGAGCLGISFNVITGEEIPGIREGKRAI-YGARRTLNVTQ---------YREHPGDSYNPV-TMRDVPATAPPHQTTEMLKRSEDVHLRTRPW 243          
BLAST of mRNA_E_fasciculatus_S2_contig843.16563.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1K6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.640e-24
Identity = 81/215 (37.67%), Postives = 106/215 (49.30%), Query Frame = 1
Query:    7 KNASD-EVFDGG---YSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKDGFDRLNANRTNYSLGQYPTTELKTA-TAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTFARDSVRRGGGGGEGVLGVRFDLINGREDAGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMY--VDILTGKDRRKFDVP-ERGAGAPVRSDTVSGRTRPW 627
            KN SD E F GG   Y  P    R +  +      ++H+  Y    PK  + RL A RTNY+LG Y   E K A T+      P    RV   A  G       Y  D  AR+S+ RGGGGGEG LG RFD+ING++D   R +V+MRTG R ++N  E     P     D  G  +  V+IL+G+ R + + P ++ A    R D     TRPW
Sbjct:   74 KNHSDLESFQGGPPKYKDPNVVYRTTKASDFNHESTLHSNEYMKSEPK--YTRLTAGRTNYTLGAY---EGKLASTSHTHHAPPCPIERVKGQATIGGWQTGNKYHTDIHARESIMRGGGGGEGSLGTRFDIINGKDDPSFRNRVSMRTGARVSVNKRE-----PWSQGADRYGDHHEPVNILSGQPRTRHNPPPQQNALQLRRPDQPLLATRPW 278          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig843.16563.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized7.920e-15197.13protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M7... [more]
Hypothetical1.050e-2733.49protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical2.770e-2736.79protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.100e-2638.68protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical2.640e-2437.67protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig843contigE_fasciculatus_S2_contig843:13401..14537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size630
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001520.1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842502.219138-CDS-E_fasciculatus_S2_contig843:13400..139861696842502.219138-CDS-E_fasciculatus_S2_contig843:13400..13986Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig843 13401..13986 -
1696842502.231258-CDS-E_fasciculatus_S2_contig843:14493..145371696842502.231258-CDS-E_fasciculatus_S2_contig843:14493..14537Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig843 14494..14537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig843.16563.1prot_E_fasciculatus_S2_contig843.16563.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig843 13401..14537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig843.16563.1

>prot_E_fasciculatus_S2_contig843.16563.1 ID=prot_E_fasciculatus_S2_contig843.16563.1|Name=mRNA_E_fasciculatus_S2_contig843.16563.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=210bp
VNKNASDEVFDGGYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKDGFD
RLNANRTNYSLGQYPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDG
SYRLDTFARDSVRRGGGGGEGVLGVRFDLINGREDAGARGKVAMRTGPRR
TLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSD
TVSGRTRPW*
back to top

mRNA from alignment at E_fasciculatus_S2_contig843:13401..14537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig843.16563.1 ID=mRNA_E_fasciculatus_S2_contig843.16563.1|Name=mRNA_E_fasciculatus_S2_contig843.16563.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1137bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig843:13401..14537- (Ectocarpus fasciculatus EfasUO2)
GTCAACAAGAACGCCTCGGACGAGGTCTTCGACGGGGGATACAGGTAACG AACGACCGTGTCACGCCGGTCCGACTGGCTCAGAGTATTGGTTGGAATAC TATTGCGGCAGCTCGAAAACTCTATCCCAACACAGCCGTAGGAGCGAATG AATGCGCCATACGGGGAGTTTGAGGGCGCCCATCACAACTTCCCGCCGAC ACGAGCGGAGTTCCTCACCGGGTGATGCTGTATCACCCCCCGTATTCGCA CTGACAGAAATATCCAATTGACAAAGCACAATCGATCACACAAGGGCATG GAGCTGCGTGCTGGTGGTTTGTGCAACCTTTCCCGTACGCGCACACATGT GCATTGCCCCATTCCTTTTGCGACCTATGTGTCACGTCAGGCCGATGCGG TGTGTATCATTGATTCCTCTTTTTGTGTCACGACTCCTTTCGAAGTCATG AAAGCTTTCATTTATGCTGAATCCTCTTCACATTTTTGTTTACCAACATC CGCGCATCCTTGCTCCAACGGCGTTCTCTCTTGCGGTACGCACGCGAAAA GCCCACCGCCCTCAGACCCGCGCTTCTCCACCGTCACGAGGATGGAGCTC ACCAAGTCCGTGCACACCCCGGGCTACGCCATCCGGCGGCCGAAGGACGG CTTCGACCGCCTCAACGCTAACCGCACCAACTACTCGCTCGGCCAGTACC CGACGACGGAACTCAAGACCGCCACGGCGGAGCTCCAGATGAAGCACCCT CGCGACCAGCCCCGCGTGGACCAGCCCGCTGTGGGGGGTTCGACGCTCCG TGACGGGTCCTACCGCCTCGACACGTTCGCGAGGGACAGCGTTCGGCGCG GGGGGGGCGGCGGAGAGGGGGTGCTCGGGGTGCGGTTCGATCTGATCAAC GGGAGGGAGGACGCGGGCGCGAGGGGGAAGGTCGCCATGCGAACGGGGCC GCGGCGGACGCTGAACAACGCGGAGAAGGAGGTGTTGCACCCGACGGATG GGTGGGGGGACGTGCCCGGGGGGATGTACGTCGACATCTTGACGGGGAAG GACAGGCGGAAGTTCGACGTGCCAGAGCGAGGGGCTGGGGCTCCTGTCAG GAGTGATACCGTTTCGGGGAGAACGCGCCCTTGGTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig843:13401..14537-

>mRNA_E_fasciculatus_S2_contig843.16563.1 ID=mRNA_E_fasciculatus_S2_contig843.16563.1|Name=mRNA_E_fasciculatus_S2_contig843.16563.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig843:13401..14537- (Ectocarpus fasciculatus EfasUO2)
GTCAACAAGAACGCCTCGGACGAGGTCTTCGACGGGGGATACAGCCCACC
GCCCTCAGACCCGCGCTTCTCCACCGTCACGAGGATGGAGCTCACCAAGT
CCGTGCACACCCCGGGCTACGCCATCCGGCGGCCGAAGGACGGCTTCGAC
CGCCTCAACGCTAACCGCACCAACTACTCGCTCGGCCAGTACCCGACGAC
GGAACTCAAGACCGCCACGGCGGAGCTCCAGATGAAGCACCCTCGCGACC
AGCCCCGCGTGGACCAGCCCGCTGTGGGGGGTTCGACGCTCCGTGACGGG
TCCTACCGCCTCGACACGTTCGCGAGGGACAGCGTTCGGCGCGGGGGGGG
CGGCGGAGAGGGGGTGCTCGGGGTGCGGTTCGATCTGATCAACGGGAGGG
AGGACGCGGGCGCGAGGGGGAAGGTCGCCATGCGAACGGGGCCGCGGCGG
ACGCTGAACAACGCGGAGAAGGAGGTGTTGCACCCGACGGATGGGTGGGG
GGACGTGCCCGGGGGGATGTACGTCGACATCTTGACGGGGAAGGACAGGC
GGAAGTTCGACGTGCCAGAGCGAGGGGCTGGGGCTCCTGTCAGGAGTGAT
ACCGTTTCGGGGAGAACGCGCCCTTGGTAG
back to top