mRNA_E_fasciculatus_S2_contig8428.16560.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8428.16560.1
Unique NamemRNA_E_fasciculatus_S2_contig8428.16560.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8428.16560.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP75_ECTSI)

HSP 1 Score: 592 bits (1526), Expect = 3.340e-205
Identity = 357/443 (80.59%), Postives = 369/443 (83.30%), Query Frame = 3 
Query:  339 HNTGNPLGGTSTSDYANGDVADSDFESRQIEAAVRNSLADLGDGRGGVPPAPPTAPPRGSPAYGQRTPRQVETLPGTRRTFGNQETAEYWDPVLDEPIPAGLTDNAVVAADAGAENREWDAVLAEALSVVEFDVSDEIPAGANREGFRRTLRVLLRNMLAGNERRGRVRNDNAVFQENIGRWACGRQLMRMAGFTMERETSSRDGDGVADGSVNEQGGSYVWFARGRRSSGRLAMVQGLVEALEVQGTTATGDGRRGXXXXXXXXXXXXXXXXXXXXXXXXXXSASQDPGEPLARTGWYAFAAAGSRATPPPPLRLSPAVGADDDFSRVRREQDEAFEEALRRDRQASATRNTKAPAIGHVDTKQAEEQDLPPTIGENDKRQEGCQGPRPEAEGDEDVGGGRSLGGVDVEHGDDSTDAPAAEETAEQRRAKIALSYARLGLGS 1667
            +N   PLGGT T D ANGDVADSDFESRQ EAAVR SLADL +G GG PPAPP A PR +PAY  +TP  VETL GT R FGN+E AEYWDPVLD PIPAGLTDNA VAADAGAENREWDAVLAEALSVVEFDVSDEIPAGANRE FRRTL VLLRN+LAGNERR RVRNDN VFQENIGRWACGRQLMRMAGFTMERE+SSRD  G AD  VNEQ GSYVW AR RRS GRLAMVQGLVEALE QGTTAT D     XXXXXXXXXXXXXXXXXXXXXXXXXSA QDPGEPLARTGWYAFAA GSRA  PPPLRLSPAV ADDDFSRVRREQDEAFEEALRRDR+A A+R TKAPA G  DT+          +GEND RQE  QGP PEAEGDEDVGGGRSLGG+ V HGD STD P AEET EQRRAKIALSYARLGLGS
Sbjct:  140 NNNDKPLGGTDT-DNANGDVADSDFESRQFEAAVRKSLADLENGEGGAPPAPPAALPRATPAYAIQTPPHVETLHGTPRAFGNREIAEYWDPVLDGPIPAGLTDNAGVAADAGAENREWDAVLAEALSVVEFDVSDEIPAGANREEFRRTLIVLLRNILAGNERRRRVRNDNVVFQENIGRWACGRQLMRMAGFTMERESSSRDDGGDADWGVNEQRGSYVWVARERRSRGRLAMVQGLVEALEGQGTTATED-----XXXXXXXXXXXXXXXXXXXXXXXXXSARQDPGEPLARTGWYAFAATGSRAALPPPLRLSPAVEADDDFSRVRREQDEAFEEALRRDREAPASRKTKAPAFGDDDTQH---------VGENDNRQEESQGPPPEAEGDEDVGGGRSLGGIGVGHGDGSTDPPPAEETTEQRRAKIALSYARLGLGS 567
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8428.16560.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.340e-20580.59protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8428contigE_fasciculatus_S2_contig8428:2661..6465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1670
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_000570.1
Cds size861
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8428.16560.1prot_E_fasciculatus_S2_contig8428.16560.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8428 2661..4931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.8711536-CDS-E_fasciculatus_S2_contig8428:2660..29931696842501.8711536-CDS-E_fasciculatus_S2_contig8428:2660..2993Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8428 2661..2993 -
1696842501.8875794-CDS-E_fasciculatus_S2_contig8428:3731..39011696842501.8875794-CDS-E_fasciculatus_S2_contig8428:3731..3901Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8428 3732..3901 -
1696842501.9060547-CDS-E_fasciculatus_S2_contig8428:4342..46291696842501.9060547-CDS-E_fasciculatus_S2_contig8428:4342..4629Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8428 4343..4629 -
1696842501.9226646-CDS-E_fasciculatus_S2_contig8428:4860..49311696842501.9226646-CDS-E_fasciculatus_S2_contig8428:4860..4931Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8428 4861..4931 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.9327543-UTR-E_fasciculatus_S2_contig8428:4931..54581696842501.9327543-UTR-E_fasciculatus_S2_contig8428:4931..5458Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8428 4932..5458 -
1696842501.9430916-UTR-E_fasciculatus_S2_contig8428:5712..57671696842501.9430916-UTR-E_fasciculatus_S2_contig8428:5712..5767Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8428 5713..5767 -
1696842501.9528823-UTR-E_fasciculatus_S2_contig8428:6087..61591696842501.9528823-UTR-E_fasciculatus_S2_contig8428:6087..6159Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8428 6088..6159 -
1696842501.962713-UTR-E_fasciculatus_S2_contig8428:6310..64651696842501.962713-UTR-E_fasciculatus_S2_contig8428:6310..6465Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8428 6311..6465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8428.16560.1

>prot_E_fasciculatus_S2_contig8428.16560.1 ID=prot_E_fasciculatus_S2_contig8428.16560.1|Name=mRNA_E_fasciculatus_S2_contig8428.16560.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=287bp
MLAGNERRGRVRNDNAVFQENIGRWACGRQLMRMAGFTMERETSSRDGDG
VADGSVNEQGGSYVWFARGRRSSGRLAMVQGLVEALEVQGTTATGDGRRG
GAAATAATAISTTAPEEAAGWRPPPPSASQDPGEPLARTGWYAFAAAGSR
ATPPPPLRLSPAVGADDDFSRVRREQDEAFEEALRRDRQASATRNTKAPA
IGHVDTKQAEEQDLPPTIGENDKRQEGCQGPRPEAEGDEDVGGGRSLGGV
DVEHGDDSTDAPAAEETAEQRRAKIALSYARLGLGS*
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mRNA from alignment at E_fasciculatus_S2_contig8428:2661..6465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8428.16560.1 ID=mRNA_E_fasciculatus_S2_contig8428.16560.1|Name=mRNA_E_fasciculatus_S2_contig8428.16560.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3805bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8428:2661..6465- (Ectocarpus fasciculatus EfasUO2)
GGGAGGACATACACGACCCCCCGCCAGGGCCAAGCCGTCTTGCCGAATGG
CGCGCGATCGGCGGCCGCTCCGGCCACGCGGCTCACCGAAGATGAGCTGC
GCAGAGCCCGCATCCGTCGTGATAAGACGGACAAGTACGAGCGGAAACTC
GCGAGGTATGACATGCAGGCCGCAGCTCTTGTCGCTTCTTACAATCAGGG
TGCCAGTGATGGTTGCTTTCGAGTCCTACCGTTGATCGTTTTCTGGTCCG
TGATGTCGGTGGCGATCTTTGCTGACGAACTGTGCTTGCTTGCGCCGCAC
GGCCAGGGAGGAGGCCGAGCGCCGCGCGAAAGCGGAGAGGGACGCTCCCA
TCCAGCGGAAGCTAGAGAGAGCTCGCAGGTTTGACGGGCGATGGTGGTCT
CTGGGTCGCTGTATTCACGCTACAACAGCTCAAGGTCGCTGCAAAACGCT
CGTAAACCACCAAAGTATCGCCTCGGTATTCTATGTAGCACCATGTTGCA
AATATGCGCCCTTACCTGTAAGCCCTCTCTCCGTGCCACGTGTTCTTCGA
TCGAGAGGCACCACAAAATCAGTCAACAGGTTCACCCGCTTTTCTGACGG
TTTCAAAGGTTATGCTTAGGAGCGTCTCTTTCTGTCTGATGCCGTTCCCT
CGACGAACAACAAAGACGCGCTTGCCACTTACGTACATACTCCGGCAGAG
CCCAGGAAAAGCTCGAGGCGAAGGAGAGTCGGCAAGCGGCGAAGCTCAAG
CAGGTGCGTTGAGTCGTCTGCGAGGCTCGGCGAAGGGTGATTAGACGACC
AACAAGATTCATTGTCGAAAGCTTCACTACAAGAGATCTGTACTAGTACT
GATTGGCATTGCTCTCTTCTGACCCGATTTGAAAGCTACGTCTGGCGTTC
CCCGTGGACAAGCCCTGGCCGATGACTACTACACGTTCATGTCATCCCGC
CTCTGGCACTCGTGTTCCCACCACCTACATGTGCCTTAACAACGTGCCTC
TGCACAGACCGTGCGCTCCTCGTGGCAGCAGCGGTCACTTGACAACAACA
ACAACAACAACAACACAACACCGGAAACCCCTTGGGCGGCACCAGCACCT
CCGACTACGCGAACGGTGACGTCGCCGATAGCGACTTCGAGTCCCGTCAG
ATCGAGGCGGCCGTGCGCAATAGCCTCGCAGACCTGGGGGACGGAAGAGG
GGGCGTCCCCCCCGCCCCACCGACCGCTCCTCCCCGTGGATCACCTGCGT
ACGGGCAACGCACGCCTCGTCAGGTCGAAACCCTCCCCGGGACACGCCGT
ACCTTTGGCAACCAAGAAACCGCCGAGTATTGGGATCCAGTCCTTGACGA
GCCTATCCCAGCCGGACTCACCGACAACGCGGTTGTTGCCGCCGACGCGG
GGGCAGAGAACCGTGAGTGGGACGCCGTTTTGGCGGAGGCGCTTTCGGTT
GTGGAGTTCGACGTGTCTGACGAGATCCCGGCCGGGGCGAACCGGGAGGG
GTTCCGCCGCACCCTCCGCGTGCTGCTACGAAACATGCTGGCAGGGAACG
AACGCCGCGGGAGGGTGCGGAACGATAACGCCGTATTTCAAGAAAACATC
GGCAGGTAAAGGAGGGGTGTCCGTCATCCCCGTGAACGAACGGTAAAAAC
ATATATATATGCCATGAACACCCCCCTCCGCCCCGATCCGCCTTGCACCT
TGCCTAGCCAAATGGCACTTGCACTCTGTCCGTACAAGAGCGGCGTTCCG
TTGTGGCGGCACGTCGCCCTGATGCCCGGCGATGCACTCTCAACAAATGA
ATCATTCCTTTACATGTTTTGTGCCCCCTCACAAAGGTGGGCCTGTGGCC
GCCAGCTGATGCGCATGGCGGGCTTTACCATGGAACGCGAGACTTCTTCC
CGGGATGGTGATGGCGTTGCGGATGGGAGCGTCAACGAGCAGGGGGGGTC
GTACGTGTGGTTTGCGCGCGGGCGTAGGTCGAGCGGGCGCCTCGCCATGG
TTCAGGGGCTGGTGGAAGCTTTGGAGGTCCAGGGTACGACGGCCACGGGA
GACGGCAGGCGTGGAGGAGCAGCAGCAACAGCAGCAACAGCAATATCAAC
AACAGCACCAGAGGAAGCAGCAGGTCCGGGTGAAAGCGGGGTGCTGGCCG
GGAAGTGTTGACAAGGGGGGAAGCGGTAAACAAGAATGCGGGCTCCCGTG
TCCATGAATAGGAATATGTTTGTCTGGGCATGCACCGAGGGATGCCTATC
GTCAGGCACCTTATACCACGACACCGCACGCTACAGGAGTAACAGTAGTC
GGCTTTAGCGACGAGTGAAAACCAACCTCTCCTACATCGTTGTTGAGCGA
CCTGCTTCCCAGGGTTTCAATGGCTTCGTCTGTTACTTGACGCATCTACC
CGTTGATACCACTAGAGTCATACCGGGCTGCTGAAGCACCCCGATATCCG
AAATTTCTCGGAACGTTCTGCTCTTGGAGGATGTTGAAAGTACTCGTCGT
CACTGGTCCGGGTGTGTACTTGCACGGCCACTCAAATTCCATTATCCAAC
CTTGTCCGTGTCAGGATGGCGACCGCCGCCGCCCTCTGCCAGTCAGGATC
CCGGTGAACCTTTGGCCAGGACAGGATGGTACGCATTCGCGGCAGCAGGA
TCTCGCGCGACTCCTCCACCTCCACTGCGTCTGAGCCCTGCGGTGGGAGC
GGACGACGACTTTTCTCGCGTTCGGCGGGAGCAGGTACACGCGGCATTGT
CAAGACGATGAAAAATGGTTTGCTATCTACTTAGGCATTGCGTTCGTCGA
TAAACTCCTTATGACGTGGTTCTGTATCCTTTGGTTGCACTCAAAGAAGG
GCAACGACAAATGGAAGACGGGGCTGTGGGGAGAACAAAACCTAGCCTCT
CTTGTAGACAAGCGATATTTTCTAGAGACTTGTGGTGGTGTCGACAAAAA
CAGGGGTTGGTTCGACAGCCGTTTCCCCACCCCGTGACGCTAGCCCTTCA
CCTTCGACGACTTTACTTACCCTTCCCACACCATGATGTACGAGAAGGCC
TGTAGAGGACCTGGCGGTTTTCGTCTCGAGAAGCAACCAAAACGTGTATG
TGATGACCGATATTTGCGTATTCCGAGTTGTGGCGTCCAAGGCGAGTACA
TGTACTATTCAACCAACGCACCGATGCCTGGACGTGTGGGTGGCAGGACC
CTCGGGACTTTTAGGCACAAGCGTGCGGTGCATCCTTCCATGATCCGTAT
TTACGCCTTCTCGGTGAAGCTTGACTGAAACCTCACGGTCGCATGCCATC
ACTCCAACCGGCGTGCGTACCGCGGCCTCCCGTTGAAGATACAGGCGCAG
ATGGTTGCGAAGCCTTAGCTCCACACCGCTCTCAGTATTCGAACCAATCA
TCGCGTGCAATATCTCCCCCACACACACTCAAATGTGATGGCATATACTG
ATACTTGGTTCGTGATGCCCAGGATGAGGCGTTCGAAGAGGCCCTGCGCC
GAGACAGGCAGGCATCGGCTACGAGAAACACCAAGGCTCCCGCTATCGGG
CACGTCGACACGAAGCAAGCGGAAGAGCAGGATCTTCCTCCCACTATCGG
TGAGAACGACAAGCGGCAAGAGGGGTGCCAGGGCCCTCGTCCCGAGGCCG
AGGGAGACGAGGACGTCGGCGGAGGACGGAGTCTCGGAGGCGTCGACGTT
GAACACGGGGATGACTCGACAGATGCCCCCGCTGCCGAGGAGACTGCAGA
GCAAAGGCGCGCGAAGATCGCGCTAAGCTACGCCCGGCTCGGGCTGGGTT
CGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8428:2661..6465-

>mRNA_E_fasciculatus_S2_contig8428.16560.1 ID=mRNA_E_fasciculatus_S2_contig8428.16560.1|Name=mRNA_E_fasciculatus_S2_contig8428.16560.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=861bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8428:2661..6465- (Ectocarpus fasciculatus EfasUO2)
ATGCTGGCAGGGAACGAACGCCGCGGGAGGGTGCGGAACGATAACGCCGT
ATTTCAAGAAAACATCGGCAGGTGGGCCTGTGGCCGCCAGCTGATGCGCA
TGGCGGGCTTTACCATGGAACGCGAGACTTCTTCCCGGGATGGTGATGGC
GTTGCGGATGGGAGCGTCAACGAGCAGGGGGGGTCGTACGTGTGGTTTGC
GCGCGGGCGTAGGTCGAGCGGGCGCCTCGCCATGGTTCAGGGGCTGGTGG
AAGCTTTGGAGGTCCAGGGTACGACGGCCACGGGAGACGGCAGGCGTGGA
GGAGCAGCAGCAACAGCAGCAACAGCAATATCAACAACAGCACCAGAGGA
AGCAGCAGGATGGCGACCGCCGCCGCCCTCTGCCAGTCAGGATCCCGGTG
AACCTTTGGCCAGGACAGGATGGTACGCATTCGCGGCAGCAGGATCTCGC
GCGACTCCTCCACCTCCACTGCGTCTGAGCCCTGCGGTGGGAGCGGACGA
CGACTTTTCTCGCGTTCGGCGGGAGCAGGATGAGGCGTTCGAAGAGGCCC
TGCGCCGAGACAGGCAGGCATCGGCTACGAGAAACACCAAGGCTCCCGCT
ATCGGGCACGTCGACACGAAGCAAGCGGAAGAGCAGGATCTTCCTCCCAC
TATCGGTGAGAACGACAAGCGGCAAGAGGGGTGCCAGGGCCCTCGTCCCG
AGGCCGAGGGAGACGAGGACGTCGGCGGAGGACGGAGTCTCGGAGGCGTC
GACGTTGAACACGGGGATGACTCGACAGATGCCCCCGCTGCCGAGGAGAC
TGCAGAGCAAAGGCGCGCGAAGATCGCGCTAAGCTACGCCCGGCTCGGGC
TGGGTTCGTGA
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