mRNA_E_fasciculatus_S2_contig8427.16559.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8427.16559.1
Unique NamemRNA_E_fasciculatus_S2_contig8427.16559.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 928 bits (2398), Expect = 0.000e+0
Identity = 583/840 (69.40%), Postives = 607/840 (72.26%), Query Frame = 1 
Query:    1 KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSPRPPXXXXXXXXXXXXXXXXSTPQGPTADLPLP---PPSAHALAPGRGLLFERDARAES-SSTTCTGAGDLAADGGGEEAGTAAVAAVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPEFGVPNGRPASRGAGCKGVSGSEGGGAFRGAVGYGGGSGGAYPDWHQQEQQPGLMRRSSPPPLMDPRRPGGDHSR--------------------------------------------MMSLDGSSDLLPHHLSRSGSSPAAGARERGYTIAAGLTSARRSPFCDDAIGGGSXXXXXXXXXSQQQHQFGGGGDIERPRSVSSSGAPLPRHHRRSHYMPAHAGFLRDAAT-EVAAEQRDYGGRSSAPDGPADFHDHYPHHKSRPQQHPSDVVGRIGGQESSMRQQHQDHDRYHGSGSG--HVRPYSAGPVAPGARGGGGGGNYGIVRREMPTRSASCRPYSEHQHPAAALPPSSWDYLRSGEGVAAGGVGDDEACLDWSGATVPPPSGRREPRRWSLXXXXXXXXXXXXXR-----WEQEDALDRATGAFASA-WPKDPARLPPEGWVEDNDI-------ASAGFSAWDPGFGDEQQGRRXXXXXXXXXEPFPKGVAAVSASTAAALHAHARRHSVTEGFVRINTIPPEVAGXXXXXXXXXXXXAVPTDQDNGGSCPPGFSAAVTGG 2328
            KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQAN AI+TMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSPR P  XXXXXXXXXXXXXX   QGPT +L LP              GL +ERDAR ES SSTTCT AGD AADGGGE+ GT A   VPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPE GV NGRPASRGAGCKG SG+ GGGAFRGAVG G                          PL+DPRR GGDHSR                                            +M+LDGSSD L HHLS SGSSPAA  RERGYTIA+GLTS RR+ FCDD IGG S XXX       QQH+FGG G  ERPRSVSSSG PLPRHHR S Y P HAGFLRD AT E AAEQRDYGGR SAP GP + HD YPH  SRPQ HPS +VGR+GGQESSMRQQ QDH           HVRPYSAG V PG   GGGGGNYGIVRR+MPTRSASCRPYSEHQHPAAALPPSS D L S EGVAAG  GD EA LDWSG+TVPPPSGRRE RRWSL    XXXXXXXXX      WEQ+DALDRATGAFA+A WPKD ARL  EGWVEDNDI       ++A FS WD GFG+EQ+GRR           F  GVAAVSASTAA LHAH RRHSVTEG V           XXXX        AVPTD+DNGGSCPPGFSA +T G
Sbjct:  110 KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSPRLPQPXXXXXXXXXXXXXX---QGPTTELSLPLXXXXXXXXXXXXAGLRYERDARRESRSSTTCTSAGDNAADGGGEKDGTGA--GVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPESGVQNGRPASRGAGCKGGSGNGGGGAFRGAVGIG------XXXXXXXXXXXXXXXXXXSSPLIDPRRQGGDHSRAVHALEHQHLLXXXXXXXXXXXXXXPYHRHRPSDSQQRNAAAPSIMALDGSSDRLTHHLSLSGSSPAA-TRERGYTIASGLTSTRRA-FCDDVIGGSSGXXXAGSL--SQQHRFGGEG--ERPRSVSSSGVPLPRHHRASRYSPTHAGFLRDVATVEAAAEQRDYGGRPSAPGGPVELHDQYPHRNSRPQ-HPSGMVGRMGGQESSMRQQLQDHXXXXXXXXXXXHVRPYSAGAVDPGT--GGGGGNYGIVRRDMPTRSASCRPYSEHQHPAAALPPSSRDCLGSWEGVAAG-AGDGEAYLDWSGSTVPPPSGRRELRRWSLQQQQXXXXXXXXXXXXXXXWEQQDALDRATGAFATAAWPKDAARLLEEGWVEDNDIGTRNDNNSAAVFSGWDSGFGEEQRGRRRQQSPPAR---FRNGVAAVSASTAA-LHAHPRRHSVTEGLVGGGGXXXXXXXXXXXLARAVVGGAVPTDKDNGGSCPPGFSAGLTRG 924
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BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA1_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 1.400e-130
Identity = 249/369 (67.48%), Postives = 260/369 (70.46%), Query Frame = 1 
Query: 1258 IERPRSVSSSGAPLPRHHRRSHYMPAHAGFLRDAATEVAAEQRDYGGRSSAPDGPADFHDHYPHHKSRPQQHPSDVVGRIGGQESSMRQQHQDHDRYHGSGSGHVRPYSAGPVAPGARGGGGGGNYGIVRREMPTRSASCRPYSEHQHPAAALPPSSWDYLRSGEGVAAGGVGDDEACLDWSGATVPPPSGRREPRRWSLXXXXXXXXXXXXXRWEQEDALDRATGAFASA-WPKDPARLPPEGWVEDNDI-------ASAGFSAWDPGFGDEQQGRRXXXXXXXXXEPFPKGVAAVSASTAAALHAHARRHSVTEGFVRINTIPPEVAGXXXXXXXXXXXXAV----PTDQDNGGSCPPGFSAAVTGG 2328
            +ERPRSVSSSG PLPRHHR SHY P HAGFLRDAA  VAAEQRDYGGR SAP GP +  D YPH KSRPQ HPSD+VGRIGGQESSMRQQ QDH                              NYGIVRR+MPTRSASCRPYSEHQHPAAALPPSSWD L SGEGVAAG  GD EA LDWSG+TVPPPSGRRE RRWSL   XXXXXXXXX RWEQ+DALDRATGAFA+A WPKDPARLP EGWVEDNDI       A+AGFSAWDPGFGDEQ GRR           F  GVAAV+AST A L  H RRHSVTEG V   TI  EVAG             V    PTD+DNGGSCPPGFSA +T G
Sbjct:    1 MERPRSVSSSGVPLPRHHRASHYTPGHAGFLRDAAAAVAAEQRDYGGRPSAPGGPVELQDQYPHRKSRPQ-HPSDMVGRIGGQESSMRQQLQDHXXXXXXXXXXXXXXXXXXXXXXX-------NYGIVRRDMPTRSASCRPYSEHQHPAAALPPSSWDCLGSGEGVAAG-TGDGEAYLDWSGSTVPPPSGRRELRRWSLQQQXXXXXXXXX-RWEQQDALDRATGAFATAAWPKDPARLPQEGWVEDNDIGTRNNHDAAAGFSAWDPGFGDEQLGRRLQQSPPAR---FRNGVAAVAASTTA-LDTHPRRHSVTEGLVGNKTIRAEVAGCGGVGSGGRARAVVGGAFPTDKDNGGSCPPGFSAGLTRG 355
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BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 7.230e-66
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 1 
Query:    1 KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGL 336
            KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM  L
Sbjct:  112 KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMVRL 223
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BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.120e-38
Identity = 83/169 (49.11%), Postives = 111/169 (65.68%), Query Frame = 1 
Query:    4 PGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTS 453
            PGVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF TSEQAN A+++M  F+FK G +L                    VLPSDENRTL+  G++E+ S   +C  L     G++++  +  +ED  K+R FCF+EF ++ +AAV    H+ S
Sbjct:  153 PGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFLTRSFEGIKRIHLMWGKEDVCKLRPFCFIEFHTNEQAAVALLSHRQS 321
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.290e-36
Identity = 79/173 (45.66%), Postives = 105/173 (60.69%), Query Frame = 1 
Query:    4 PGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRK--------------------------VEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRH 444
            PGVEIFVGGLTR++  +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF  SEQAN AI+ M  ++FK G +LG+LPSDENRTL+V G+ + WS   +         G+++                          ++ + DRE   ++R FCF+EF +H  A     R+
Sbjct:  232 PGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSANFEGVKRQVELCAARDAAARRAPLCWRRVASIRMQLVWDRETPSRLRPFCFVEFDTHEHATSAHARY 404
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BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI)

HSP 1 Score: 103 bits (256), Expect = 4.070e-19
Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 1 
Query:    1 KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQ 447
            K  +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLF+G +   W+   I Q LK+  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  250 KKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 398
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST)

HSP 1 Score: 103 bits (258), Expect = 4.500e-19
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1 
Query:   13 EIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQ 447
            EIFVGGL R    D L+  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLFVG +   W+   I Q LK+  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  335 EIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 479
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: Uncharacterized (protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NC05_CHEQI)

HSP 1 Score: 103 bits (256), Expect = 1.070e-18
Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 1 
Query:    1 KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQ 447
            K  +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLF+G +   W+   I Q LK+  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  547 KKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 695
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: nucleolin-like (isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FBE2C)

HSP 1 Score: 102 bits (255), Expect = 1.130e-18
Identity = 57/150 (38.00%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:    1 KPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQ 447
            K  +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M       G+  G  P+++N TLF+G +   W+   I Q LKE  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  341 KKELEIFVGGLDREVVEDDVKTAFEKVGEVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALSEMKN-PVICGKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKEYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 489
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YSI3_DAVIN)

HSP 1 Score: 100 bits (250), Expect = 2.490e-18
Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = 1 
Query:   10 VEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEK-MPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQ 447
            +EIFVGGL R    + +++ F+  GEV EVR+ ++    + +GY +V+FA+ EQA RA+  M       G+  G  PS++N  LF+G +   W+   I Q LK+  + G+ K+  +PD +     R F FLEF+ HA+A + + R Q
Sbjct:  349 LEIFVGGLDRDAVEEDVKNAFEKIGEVVEVRLHKNPSTNKNKGYAFVKFASKEQATRALSEMKN-PLIRGKRCGTAPSEDNDALFLGNICNTWTREAIKQKLKDYGIEGVEKITLVPDAQHEGLSRGFAFLEFSCHADAMLAYKRLQ 494
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8427.16559.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RRM0.000e+069.40domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.400e-13067.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RRM7.230e-6698.21domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RRM3.120e-3849.11domain-containing protein n=1 Tax=Tribonema minus ... [more]
RRM7.290e-3645.66domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized4.070e-1937.33protein n=1 Tax=Chenopodium quinoa TaxID=63459 Rep... [more]
Uncharacterized4.500e-1939.04protein (Fragment) n=1 Tax=Opuntia streptacantha T... [more]
Uncharacterized1.070e-1837.33protein n=2 Tax=Chenopodium quinoa TaxID=63459 Rep... [more]
nucleolin-like1.130e-1838.00isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris T... [more]
Uncharacterized2.490e-1836.73protein (Fragment) n=1 Tax=Davidia involucrata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8427contigE_fasciculatus_S2_contig8427:290..6698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score193.7
Seed ortholog evalue3.1e-46
Seed eggNOG ortholog2880.D7FYA2
Model size2670
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cytidine to uridine editing
EggNOG OGsKOG0117@1,KOG0117@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-24_003230.1
Cds size2286
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8427.16559.1prot_E_fasciculatus_S2_contig8427.16559.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8427 620..6644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.7633467-UTR-E_fasciculatus_S2_contig8427:289..6191696842501.7633467-UTR-E_fasciculatus_S2_contig8427:289..619Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8427 290..619 -
1696842501.82811-UTR-E_fasciculatus_S2_contig8427:6644..66981696842501.82811-UTR-E_fasciculatus_S2_contig8427:6644..6698Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8427 6645..6698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.778717-CDS-E_fasciculatus_S2_contig8427:619..10001696842501.778717-CDS-E_fasciculatus_S2_contig8427:619..1000Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8427 620..1000 -
1696842501.790861-CDS-E_fasciculatus_S2_contig8427:1895..28221696842501.790861-CDS-E_fasciculatus_S2_contig8427:1895..2822Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8427 1896..2822 -
1696842501.8019228-CDS-E_fasciculatus_S2_contig8427:3240..39451696842501.8019228-CDS-E_fasciculatus_S2_contig8427:3240..3945Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8427 3241..3945 -
1696842501.8162136-CDS-E_fasciculatus_S2_contig8427:6371..66441696842501.8162136-CDS-E_fasciculatus_S2_contig8427:6371..6644Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8427 6372..6644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8427.16559.1

>prot_E_fasciculatus_S2_contig8427.16559.1 ID=prot_E_fasciculatus_S2_contig8427.16559.1|Name=mRNA_E_fasciculatus_S2_contig8427.16559.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=762bp
MLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRF
EFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPI
PDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSPRPPQPPPHQQAAAAAA
AAASTPQGPTADLPLPPPSAHALAPGRGLLFERDARAESSSTTCTGAGDL
AADGGGEEAGTAAVAAVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAP
PEFGVPNGRPASRGAGCKGVSGSEGGGAFRGAVGYGGGSGGAYPDWHQQE
QQPGLMRRSSPPPLMDPRRPGGDHSRMMSLDGSSDLLPHHLSRSGSSPAA
GARERGYTIAAGLTSARRSPFCDDAIGGGSGGSGGAGSLSQQQHQFGGGG
DIERPRSVSSSGAPLPRHHRRSHYMPAHAGFLRDAATEVAAEQRDYGGRS
SAPDGPADFHDHYPHHKSRPQQHPSDVVGRIGGQESSMRQQHQDHDRYHG
SGSGHVRPYSAGPVAPGARGGGGGGNYGIVRREMPTRSASCRPYSEHQHP
AAALPPSSWDYLRSGEGVAAGGVGDDEACLDWSGATVPPPSGRREPRRWS
LQQQQQQQQQRQQQRWEQEDALDRATGAFASAWPKDPARLPPEGWVEDND
IASAGFSAWDPGFGDEQQGRRRQQQQSPPPEPFPKGVAAVSASTAAALHA
HARRHSVTEGFVRINTIPPEVAGGGGGRGSAVVGGAVPTDQDNGGSCPPG
FSAAVTGGRQR*
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mRNA from alignment at E_fasciculatus_S2_contig8427:290..6698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8427.16559.1 ID=mRNA_E_fasciculatus_S2_contig8427.16559.1|Name=mRNA_E_fasciculatus_S2_contig8427.16559.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6409bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8427:290..6698- (Ectocarpus fasciculatus EfasUO2)
AAGCCCGGGGTGGAGATTTTCGTCGGGGGTCTCACGCGCAGCACGCGACG
CGACATGCTGCGGGATTGGTTCCAGCACGCCGGGGAAGTGACCGAGGTTC
GCATCGCACGCGACAAGAGGCGCAGGAGGTGCCGGGGCTACGGCTACGTG
CGCTTCGCCACGAGCGAGCAGGCGAACCGGGCCATCGACACCATGCACCG
CTTCGAGTTCAAGCACGGCAGGTTCCTTGGCGTCCTGCCCTCTGATGAAA
ATCGCACGCTGTTCGTCGGCGGACTCCAGGAGGAGTGGAGCTGCGCCTAC
ATTTGCCAGCTTCTCAAGGAAAAAATGGTGAGATTCTTGGTGCAATTTTG
GCCACTTTGGGGCTGGGCTGGCAAGCCGCTTTCGGATGTGCACACCGCGC
AACCTTGGCGGGGGGCGGAGGTGTCGCCTGTAGAGGCACACCGCAGCGGG
GCGTTAAAAGCTTGTTTTCTGGACCACGTGAACGCTAGAAATGGGCCGCC
CTCTTCCTGCCTCGATCAACGCACGTAACGAAATTGTATTCGGCCATGCC
TCTGCTTGCAGCGGCAGTTTGCTGGTTCCAACAGCGATTCAATCGTCCCG
TGTTGCATGATCTCCTCTTCTCTCTTTTGTACTCTCGAGTCTTGCGCGAT
GCATCGCCAGTTCAAACTTTCGTCTCCCCGGCAAGATGTCTCCCCCGCCC
CGCTAACCACCACGCGTGTGGTGCAACGTATGCACGCGAAAATTTTCATC
TTCAAACAACAATTTTTGCCACCCAAGCTGACTGTACATCTGTATCGAGC
CAGTTTTGGCCCCCAAACTGCCACCTATTGCCCGCTGCCCTTCCGGCTAT
GTATGGGTGGTGCACGCCGTGCTACGCGATGAAACAAGTTGCATTGCTGG
TCTGGACGATGAAGTTCATCTTTGCTCACCCATTCCATGTTGCAGTGGAA
AGCTAGCTGTGGTGCGTATTTTAATTTGAATAGGTTGATGTACTAAATAC
CTATCTTCTGCACGGTTTTCCCACGTGTGCAACATGTGTCTTGTTCAAAC
GTAGGTTGCAGCTGCTATCGACCGCTTGCTGTCCTCCGTTGTGGTCGCTG
TTGTTCAACCCTCAAAACCGTCCCAGCCTCTGCTCAGTGCCTGCACCGTA
CCGGTTCCCCCTGACGCAGACGGTTTCCGTGGTCGCAGGCCAACTAGAAT
GCAGCACGAACCAAGTACCTGGTAGGTACTAGACCGCCACACCTCGTGGT
ATCCGTAGCTAAAATTCAAGTTGGAACATGCGAATCAGCGAATGTATGCG
CAGAGTATTCTACATGGAACACACGAGAGATGACCGCTGTACCGCCCCCT
TAGAGCCACTTACAGAGTCACCTCGCTGGCTACATACATTGGGCGTACGT
GATAGATTTTATCGAACTTGAAGTTGATACACGTATCGCTCCCGCTCGGC
ACGTAACAAAAACACTTCTATTTTTTCTTCAAAAAACAACAATGCACAAA
CCGGCAAAACGACGGAGAAATGCTGATGTTTTTGGTTTTGGGGACTGCTG
CAAAGATGATTTGGTACAACTGCTGCTGTGTATCTAATTTCGGTGTTTTT
GGTTCGGTGTGGTGATTCGCTGGGCCCTTCGAGTCCATCAACGTTAACTG
CTGTTTGAGCTGGTCGAGCTTTGAAACAGCGTAATTACAGGAGTGACTAC
CAATACGTCTTTTTGAGCCTGTTACCCACAAGGGAGATAGATAACTCTGT
GTACTGCTCGGGAAATCGTGGACATACATACAAGTAGCCTTTACGCTAGC
AATTCATTGCTTTAGTGCAGTAGTCTATCTGAGACTTTTGTCTACGGATA
GAAATCGACTCGTTGGGTCAAAATAATAACAAGGGAAGACGTATTATAAT
AAAAAAAAGAAAGACGTCACGATCTTAGCGGGCGGTTGCAGTTGAGATTG
TTATGCTTACGTCAGCAGCCCCCCACAAAACAGCTGTCTCCTGCTCGGAG
CAACTCAACATTTAGGGGCCACGGCGCATGATTCGCTATTATTAAACCGC
CGTTTTTTTTTCCACTTTGCATCACGCGTGATGTGGCGCTGCTGTGCTCT
CGTGAGCCCCCTCCGCGGGCATCTCGCACTTTTTGTTTAGTAGGCAAATA
TCAGTAGTTTGCATGAACCCTCGCTGCACCTCTGTGGGGAACACCGGTCG
CCGCATCTGGGTGTTGCTGAGCCTCGATTCAGCGCCATGGTGCAGACGTC
AGAACGAACTAAAAATGTTGCCCTTGTTTATGTCCTCCAAACTGAGTGTT
TGGGCGCCGCATAAATCTTGAAACAGGCCCTGACGCCCGCCGCGTCTTGT
TCACAACAGGACCACTAATTATTTACGCCAAGGTCTGGGAATCAAATAAC
TCAAGTTACCGTCTCCTACAAACCGATGCCACGTTCTTTTCCTCCTGTCA
GTTAAATGTTGTCCTGCTGTAGTTGTTCTTTGGGGGTGGTCCCTTGCACT
TCGAAGGCCAAATCCATCCCACCAGACACCCCGTTCTCCCGCCGCTCACG
CACCGACATGATGCCAATAAACGGCAGCACCTTCAATCACTGACTACCTA
TTCACGCGTTTGCGTTTTTTTTCCAGGACGTTTCCATCCTCCAGCGTTTA
CCGTATGCCTCACTCGCGATCTCTCCTTGCGCGTGCGCCCCCCCTTGCAT
TGTTTTCGACTCCGTACCCGGGAAATTCGACGACAAACCAAACAAAAAAA
AAGCCTGGCTTAAGGAAAGTGGAGCCCATTCCCGACCGGGAGGACAGGTT
CAAGATCCGCACCTTCTGCTTCCTGGAGTTCGCTTCCCACGCCGAGGCCG
CCGTAATTTTCAACCGGCACCAGACCAGCCCCCGGCCGCCGCAGCCGCCA
CCTCACCAGCAGGCGGCGGCGGCAGCGGCGGCGGCGGCTTCGACGCCGCA
AGGCCCGACGGCTGACCTGCCGCTCCCGCCGCCCTCTGCACATGCGTTGG
CCCCCGGCAGGGGCTTGCTGTTCGAACGCGACGCCCGGGCGGAGAGCAGC
AGCACCACCTGCACCGGCGCCGGTGACTTGGCCGCCGACGGCGGCGGCGA
AGAGGCGGGCACGGCGGCGGTGGCGGCGGTTCCGCTGGTTGTCGGCGGGG
CCACCCTGAAGGTCGACTGGGCGGACCCCCTGCGCTACCACATCCACTTG
AACGGGGGCATAAAGGGACCGTCGGCCCCTCCGGAGTTCGGCGTGCCGAA
CGGCCGCCCTGCATCACGCGGCGCCGGCTGCAAGGGAGTTTCTGGGAGCG
AAGGAGGGGGCGCCTTCCGGGGCGCGGTAGGTTACGGCGGCGGCAGCGGC
GGAGCCTACCCCGACTGGCATCAGCAAGAACAGCAGCCGGGCCTGATGCG
GCGGTCGTCGCCGCCCCCTTTGATGGACCCCAGGCGGCCGGGCGGGGACC
ACTCGCGCGTCGTGCACGCCCTGGAGCACCACCAGCTTCTGCATCAGCGG
CAGCGGCACCAGCGGCAGCACCAGCACCAGCACCAGCAGCCCTATCATCG
CCACCACCCGTCCGATTCTCAGCAACGGAGCGCGATGGCACCGGGGGTAA
GTGGGGGACACCGATGCGTTGCAGACTCATGTGTGCGACGTGCACTTTGT
GTTTATGCTCCTTTTTGTATGTGTTGCTCTCTGTGTGTCCGCGTTCCTGG
CTCGTGGTTGTTCGGTGACGTATTTGGTAAGTTTGATAAACAAGCTCGCC
CCGATTGAGTCTCTTGCATAATCGCTATTTCCCCTCCGAAGTCTCGTCAA
TGTAGACCTTTTTTATAACGGTGTTGCGTTGCGTCGACCCCTGCCGTTCA
TGCGTTCGCTTTGCTCCGTCCTCCAGATGATGTCTCTGGACGGGTCTTCA
GACCTACTCCCTCACCACCTGTCACGCAGCGGGTCCTCGCCCGCTGCGGG
AGCGCGGGAGCGCGGCTACACCATCGCGGCGGGCCTCACCTCCGCCCGGA
GGTCGCCCTTCTGCGACGACGCGATCGGCGGCGGCAGCGGCGGCAGCGGT
GGCGCGGGTTCCCTGTCACAGCAGCAGCACCAGTTCGGCGGCGGAGGCGA
CATCGAGAGACCGCGATCGGTCTCATCGAGCGGCGCGCCGCTCCCCCGCC
ACCACCGCCGGTCCCACTACATGCCGGCCCACGCCGGGTTTCTCCGGGAC
GCGGCCACGGAGGTGGCCGCGGAACAGCGGGACTACGGCGGCCGCTCGAG
CGCCCCCGATGGTCCCGCAGATTTTCACGATCACTACCCCCACCACAAGT
CTCGGCCGCAGCAGCACCCTTCGGACGTGGTCGGACGAATAGGAGGCCAG
GAGAGCTCCATGAGGCAGCAGCATCAGGACCACGACCGTTATCACGGCAG
CGGCAGCGGGCATGTCCGGCCGTATAGCGCAGGCCCCGTCGCCCCGGGCG
CCCGCGGCGGCGGCGGCGGCGGTAACTACGGCATCGTCCGCCGCGAGATG
CCGACGAGGAGCGCCTCTTGCCGCCCCTACAGCGAGCACCAGCACCCCGC
AGCGGCACTGCCGCCATCGTCCTGGGACTACCTCCGGTCTGGGGAAGGGG
TCGCCGCCGGCGGCGTAGGGGATGACGAGGCCTGCTTGGATTGGTCTGGC
GCCACGGTGCCCCCGCCTTCCGGGCGCAGAGAGCCTCGCAGGTGGTCCCT
GCAGCAGCAGCAGCAGCAACAACAACAAAGGCAGCAGCAGCGTTGGGAGC
AAGAAGACGCCCTTGACCGCGCGACCGGTGCTTTTGCGTCAGCCTGGCCG
AAGGTGTGTTCGCGATGATGAAACCTCCATCTGCGCGCTTCGTTGTGTGT
GTGTGTGTGTTTTATTTATTTATTTGCATCGACCGCGCTAACCGGCTGAC
CAATCAAAAGACGTCAGTCTCCGTGCGGTGCAAAACACAAAACACTTGTA
CAGCCCACAATCTGGGACCCCGGGACCGAGTGTCATGGGGGAGTCTACTC
TCCGGATGGAAGACAGCTCCCGTAGCAAATACACAAATTGCACGTGTCTA
CTATGGCTGCTACCTTGCCTTCGAGTGTGTGTGTGTGTGATATATATATA
TTTTTTCGGGGTGTTTGTTGTTTGTCTTTTTTCTTGTGTGTGTTTCAAGT
TCTCTCGCAAGGTGTACATCAATCGGCCGAAGGATTTTCCGGTTTGGCTT
TTTTTTTCTTGTGGCATTCCTTGGCAGCGCCAGCAAGTGTGGCGACTGCC
TTCCTACAAGATAGCCGGCAAGTATTTGCTATGTGCCCCCGTCGATTGCT
CTCCTACTCACGTTGAACGGACTAGTTTCCACCACGCAATAACAGCACCA
CGACTTCCAAGCATCACGTGACGGTTTTTCCTGGTAGGACAACGACAATG
ACAACAGCATTTATGACGTGTCCGACACACTCATATGCCGTAGTGCTCGC
CGCTCGAGACATGGTCGTGCCTGCCCAAACAACAACGCGCCTAGCCCCTT
CCTTTTCTGGTTGTATGCGCGGAAGATTTGGCACTCTGAAACGAGACGAC
CACATTGAAAACCAGCCCCCCCGTCCAACCCCACCCCCACCATCGTGGAT
GTTTTCTTTTTTCCTCCACCTTTTAAGCTTCCCGCCGTGCCTCCCCTCCC
GCCCCCCCCGAACCCTCGCTTATATGCTCGGTAACTTGAACCCTTCAGGA
CCCGGCACGCCTGCCCCCAGAAGGTTGGGTCGAAGACAACGACATCGCCT
CCGCTGGGTTCTCCGCTTGGGATCCGGGGTTCGGGGACGAGCAGCAGGGG
CGGCGGCGGCAGCAGCAGCAGTCGCCGCCGCCAGAACCGTTCCCGAAGGG
GGTGGCAGCAGTGTCCGCCTCTACCGCGGCGGCGCTTCACGCGCACGCTC
GCCGCCACTCCGTCACGGAAGGTTTTGTCCGCATTAACACCATCCCGCCG
GAGGTGGCCGGCGGCGGCGGCGGCCGGGGTAGTGCGGTTGTGGGAGGAGC
GGTCCCCACCGACCAGGATAACGGCGGCAGCTGTCCGCCCGGGTTCTCGG
CCGCGGTGACCGGTGGCCGGCAACGGTAGCAATGGCCGTCGCTGGAGCGT
AACCGGTAACGACGCCTCGCAGCAGCCGCAGGGTGAAGAGAGAAGCGTGG
AGGTTGACTTCGGTAGCCTTTCCATGTCCGGCCACACCGGCGGCCGTACT
TGGGGGGGCGGCGCGCCGTCGCTCATGCCTGAGGCCGGCACCGCCCCCGC
TGACGATGATATCGTCGGAGGACTCTGGGAGGGCATCGGCGCGGGAGGAC
TGGACAGCCAGGATCGGTCATCATCATGGCCGAACCCGCTCCTTTCTCCC
GGTTCAGGAGGTCGCAGCCCGTGGGGAACGTAGAGAGCGATGAGTTCGGG
AGAGGGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8427:290..6698-

>mRNA_E_fasciculatus_S2_contig8427.16559.1 ID=mRNA_E_fasciculatus_S2_contig8427.16559.1|Name=mRNA_E_fasciculatus_S2_contig8427.16559.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2286bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8427:290..6698- (Ectocarpus fasciculatus EfasUO2)
ATGCTGCGGGATTGGTTCCAGCACGCCGGGGAAGTGACCGAGGTTCGCAT
CGCACGCGACAAGAGGCGCAGGAGGTGCCGGGGCTACGGCTACGTGCGCT
TCGCCACGAGCGAGCAGGCGAACCGGGCCATCGACACCATGCACCGCTTC
GAGTTCAAGCACGGCAGGTTCCTTGGCGTCCTGCCCTCTGATGAAAATCG
CACGCTGTTCGTCGGCGGACTCCAGGAGGAGTGGAGCTGCGCCTACATTT
GCCAGCTTCTCAAGGAAAAAATGCCTGGCTTAAGGAAAGTGGAGCCCATT
CCCGACCGGGAGGACAGGTTCAAGATCCGCACCTTCTGCTTCCTGGAGTT
CGCTTCCCACGCCGAGGCCGCCGTAATTTTCAACCGGCACCAGACCAGCC
CCCGGCCGCCGCAGCCGCCACCTCACCAGCAGGCGGCGGCGGCAGCGGCG
GCGGCGGCTTCGACGCCGCAAGGCCCGACGGCTGACCTGCCGCTCCCGCC
GCCCTCTGCACATGCGTTGGCCCCCGGCAGGGGCTTGCTGTTCGAACGCG
ACGCCCGGGCGGAGAGCAGCAGCACCACCTGCACCGGCGCCGGTGACTTG
GCCGCCGACGGCGGCGGCGAAGAGGCGGGCACGGCGGCGGTGGCGGCGGT
TCCGCTGGTTGTCGGCGGGGCCACCCTGAAGGTCGACTGGGCGGACCCCC
TGCGCTACCACATCCACTTGAACGGGGGCATAAAGGGACCGTCGGCCCCT
CCGGAGTTCGGCGTGCCGAACGGCCGCCCTGCATCACGCGGCGCCGGCTG
CAAGGGAGTTTCTGGGAGCGAAGGAGGGGGCGCCTTCCGGGGCGCGGTAG
GTTACGGCGGCGGCAGCGGCGGAGCCTACCCCGACTGGCATCAGCAAGAA
CAGCAGCCGGGCCTGATGCGGCGGTCGTCGCCGCCCCCTTTGATGGACCC
CAGGCGGCCGGGCGGGGACCACTCGCGCATGATGTCTCTGGACGGGTCTT
CAGACCTACTCCCTCACCACCTGTCACGCAGCGGGTCCTCGCCCGCTGCG
GGAGCGCGGGAGCGCGGCTACACCATCGCGGCGGGCCTCACCTCCGCCCG
GAGGTCGCCCTTCTGCGACGACGCGATCGGCGGCGGCAGCGGCGGCAGCG
GTGGCGCGGGTTCCCTGTCACAGCAGCAGCACCAGTTCGGCGGCGGAGGC
GACATCGAGAGACCGCGATCGGTCTCATCGAGCGGCGCGCCGCTCCCCCG
CCACCACCGCCGGTCCCACTACATGCCGGCCCACGCCGGGTTTCTCCGGG
ACGCGGCCACGGAGGTGGCCGCGGAACAGCGGGACTACGGCGGCCGCTCG
AGCGCCCCCGATGGTCCCGCAGATTTTCACGATCACTACCCCCACCACAA
GTCTCGGCCGCAGCAGCACCCTTCGGACGTGGTCGGACGAATAGGAGGCC
AGGAGAGCTCCATGAGGCAGCAGCATCAGGACCACGACCGTTATCACGGC
AGCGGCAGCGGGCATGTCCGGCCGTATAGCGCAGGCCCCGTCGCCCCGGG
CGCCCGCGGCGGCGGCGGCGGCGGTAACTACGGCATCGTCCGCCGCGAGA
TGCCGACGAGGAGCGCCTCTTGCCGCCCCTACAGCGAGCACCAGCACCCC
GCAGCGGCACTGCCGCCATCGTCCTGGGACTACCTCCGGTCTGGGGAAGG
GGTCGCCGCCGGCGGCGTAGGGGATGACGAGGCCTGCTTGGATTGGTCTG
GCGCCACGGTGCCCCCGCCTTCCGGGCGCAGAGAGCCTCGCAGGTGGTCC
CTGCAGCAGCAGCAGCAGCAACAACAACAAAGGCAGCAGCAGCGTTGGGA
GCAAGAAGACGCCCTTGACCGCGCGACCGGTGCTTTTGCGTCAGCCTGGC
CGAAGGACCCGGCACGCCTGCCCCCAGAAGGTTGGGTCGAAGACAACGAC
ATCGCCTCCGCTGGGTTCTCCGCTTGGGATCCGGGGTTCGGGGACGAGCA
GCAGGGGCGGCGGCGGCAGCAGCAGCAGTCGCCGCCGCCAGAACCGTTCC
CGAAGGGGGTGGCAGCAGTGTCCGCCTCTACCGCGGCGGCGCTTCACGCG
CACGCTCGCCGCCACTCCGTCACGGAAGGTTTTGTCCGCATTAACACCAT
CCCGCCGGAGGTGGCCGGCGGCGGCGGCGGCCGGGGTAGTGCGGTTGTGG
GAGGAGCGGTCCCCACCGACCAGGATAACGGCGGCAGCTGTCCGCCCGGG
TTCTCGGCCGCGGTGACCGGTGGCCGGCAACGGTAG
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