mRNA_E_fasciculatus_S2_contig8427.16558.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8427.16558.1
Unique NamemRNA_E_fasciculatus_S2_contig8427.16558.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8427.16558.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.030e-36
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = -1 
Query:  275 GEERSVEVDFGSLSMSGHTGGRTWGGGAPSLMPEAGTAPADDDIVGGLWEGIGAGGLDSQDRSSSWPNPLLSPGSGGRSPWGT 523
            GEER VEVDFGSL++S H+GGRTWGG   SLMPE GTAP DDDIVGGLWEGIGAGGLDSQ+ SSSWPN LLSPGSGGRSPWGT
Sbjct:  947 GEERGVEVDFGSLTLSDHSGGRTWGG-VSSLMPEGGTAPNDDDIVGGLWEGIGAGGLDSQELSSSWPNSLLSPGSGGRSPWGT 1028
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BLAST of mRNA_E_fasciculatus_S2_contig8427.16558.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA1_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 9.970e-29
Identity = 68/99 (68.69%), Postives = 70/99 (70.71%), Query Frame = -1 
Query:  239 GEERSVEVDFGSLSMSGHT-GGRTWGGGAPSLMPEAGTAPADDDIVGGLWEGIGAGGLDSQDRSSSWPNPLLSPGSGGRSPWG---T*RAMSSGEGGRG 523
            GEER VEVDFGSLSMS H  GGR WGG A SLMPE GTAP DDDIVGGLWEGIGAGGLDSQ+RS SWPNP      G   P G   T R+   G GG G
Sbjct:  378 GEERGVEVDFGSLSMSAHPRGGRAWGG-ASSLMPEGGTAPTDDDIVGGLWEGIGAGGLDSQERSLSWPNPAFFSRFGRSQPVGYVKTPRSDDLGGGGEG 475
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8427.16558.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
RRM1.030e-3684.34domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized9.970e-2968.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8427contigE_fasciculatus_S2_contig8427:45..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size523
Hectar predicted targeting categoryother localisation
Exons1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.7168374-CDS-E_fasciculatus_S2_contig8427:44..4761696842501.7168374-CDS-E_fasciculatus_S2_contig8427:44..476Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8427 45..476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.7268443-UTR-E_fasciculatus_S2_contig8427:476..5671696842501.7268443-UTR-E_fasciculatus_S2_contig8427:476..567Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8427 477..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8427.16558.1prot_E_fasciculatus_S2_contig8427.16558.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8427 45..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8427.16558.1

>prot_E_fasciculatus_S2_contig8427.16558.1 ID=prot_E_fasciculatus_S2_contig8427.16558.1|Name=mRNA_E_fasciculatus_S2_contig8427.16558.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp
MTTPPPPLGDKKSQASLNGRNRSRVRTDVGKKTKTRRPINSSTRTTSGKQ
EATTLPRPFGRGAADGKTRTKTVNAQPTLNHDPPLPNSSLSTFPTGCDLL
NREKGAGSAMMMTDPGCPVLPRRCPPRVLRRYHRQRGRCRPQA*
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mRNA from alignment at E_fasciculatus_S2_contig8427:45..567+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8427.16558.1 ID=mRNA_E_fasciculatus_S2_contig8427.16558.1|Name=mRNA_E_fasciculatus_S2_contig8427.16558.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=523bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8427:45..567+ (Ectocarpus fasciculatus EfasUO2)
ATGACTACGCCCCCCCCCCCTCTAGGGGATAAAAAATCACAAGCCAGTCT
CAACGGGCGGAACCGGAGCCGAGTGCGCACCGACGTCGGCAAGAAAACCA
AAACCCGAAGGCCAATCAATTCATCGACCCGTACAACATCAGGGAAACAA
GAAGCAACCACACTCCCTCGACCGTTCGGCAGGGGGGCAGCCGACGGAAA
AACAAGGACGAAAACAGTTAACGCGCAGCCAACCCTCAACCACGACCCCC
CTCTCCCGAACTCATCGCTCTCTACGTTCCCCACGGGCTGCGACCTCCTG
AACCGGGAGAAAGGAGCGGGTTCGGCCATGATGATGACCGATCCTGGCTG
TCCAGTCCTCCCGCGCCGATGCCCTCCCAGAGTCCTCCGACGATATCATC
GTCAGCGGGGGCGGTGCCGGCCTCAGGCATGAGCGACGGCGCGCCGCCCC
CCCAAGTACGGCCGCCGGTGTGGCCGGACATGGAAAGGCTACCGAAGTCA
ACCTCCACGCTTCTCTCTTCACC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8427:45..567+

>mRNA_E_fasciculatus_S2_contig8427.16558.1 ID=mRNA_E_fasciculatus_S2_contig8427.16558.1|Name=mRNA_E_fasciculatus_S2_contig8427.16558.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8427:45..567+ (Ectocarpus fasciculatus EfasUO2)
ATGACTACGCCCCCCCCCCCTCTAGGGGATAAAAAATCACAAGCCAGTCT
CAACGGGCGGAACCGGAGCCGAGTGCGCACCGACGTCGGCAAGAAAACCA
AAACCCGAAGGCCAATCAATTCATCGACCCGTACAACATCAGGGAAACAA
GAAGCAACCACACTCCCTCGACCGTTCGGCAGGGGGGCAGCCGACGGAAA
AACAAGGACGAAAACAGTTAACGCGCAGCCAACCCTCAACCACGACCCCC
CTCTCCCGAACTCATCGCTCTCTACGTTCCCCACGGGCTGCGACCTCCTG
AACCGGGAGAAAGGAGCGGGTTCGGCCATGATGATGACCGATCCTGGCTG
TCCAGTCCTCCCGCGCCGATGCCCTCCCAGAGTCCTCCGACGATATCATC
GTCAGCGGGGGCGGTGCCGGCCTCAGGCATGA
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