mRNA_E_fasciculatus_S2_contig8426.16557.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8426.16557.1
Unique NamemRNA_E_fasciculatus_S2_contig8426.16557.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8426.16557.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT6_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 3.130e-142
Identity = 236/241 (97.93%), Postives = 237/241 (98.34%), Query Frame = 3 
Query:    3 QVYCGRCWTIAHKEEHMAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKYVQKIXXXXXXXXXXXXXXXXIAYQWANAQKDMKADHGTGGGLSLSGLKFGGGDK-SKXXXXXEDPRTREQEEGYKKSLLLSRKDKKDMGFEVKLKKETVLDS 722
            QVYCGRCWT+AHKEEHMAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKYVQKIXXXXXXXXXXXXXXXXIAYQWANAQKDMKADHGTGGGLSLSGLKFGG DK S XXXXX DPRTREQEEGYKKSLLLSRKDKKDMGFEVKLKKETVLDS
Sbjct: 1014 QVYCGRCWTMAHKEEHMAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKYVQKIXXXXXXXXXXXXXXXXIAYQWANAQKDMKADHGTGGGLSLSGLKFGGSDKKSXXXXXXXDPRTREQEEGYKKSLLLSRKDKKDMGFEVKLKKETVLDS 1254
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BLAST of mRNA_E_fasciculatus_S2_contig8426.16557.1 vs.
Match: WW (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED0_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 7.610e-67
Identity = 143/241 (59.34%), Postives = 151/241 (62.66%), Query Frame = 3 
Query:    3 QVYCGRCWTIAHKEEHMAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKYVQKIXXXXXXXXXXXXXXXXIAYQWANAQKDMKADHGTGGGLSLSGLKFGGGDKSKXXXXXEDPRTR-EQEEGYKKSLLLSRKDKKDMGFEVKLKKETVLDS 722
            QVYCGRCWT+AHKEE MAGHVWKGADSGK          + C    A  V L+      G   AR       K+ +  +  K+        GRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEK    +                          DMKADHGTGGGLSLSGLKFGG     XXXXX       EQEEGYKKSLLLSRKDKKDMGFEVKLKKETVLDS
Sbjct:   65 QVYCGRCWTMAHKEEDMAGHVWKGADSGK----------MPC----AASVTLE----FTGVDTART-----TKSRRTPSPRKA--------GRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKKPHVM------------------------HADMKADHGTGGGLSLSGLKFGGXXXXXXXXXXXXXXXXXEQEEGYKKSLLLSRKDKKDMGFEVKLKKETVLDS 250
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BLAST of mRNA_E_fasciculatus_S2_contig8426.16557.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF21_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.560e-35
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 3 
Query:    9 YCGRCWTIAHKEEHMAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKYVQKI 431
            YC  C+  AH E+ +  H W+GAD  KE+L  GE+HC+ CG  KA  VC  C+D  C +C A  H  G  K H    Y ++K+GWQ + GR   E TYY+N STGE+ +DKP++ ML +EL EH  FLK++  +E + +K+
Sbjct: 1198 YCNECFEKAHDEDAVNEHNWRGADQDKEELKSGEKHCLVCGKAKASVVCKVCRDEYCDKCFAETHSHGQLKEHPTIPYLEAKQGWQKMVGRVAGEQTYYYNVSTGETRYDKPEEFMLEDELREHHNFLKFQLAAETHAKKV 1338
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BLAST of mRNA_E_fasciculatus_S2_contig8426.16557.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6W4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.560e-22
Identity = 76/255 (29.80%), Postives = 112/255 (43.92%), Query Frame = 3 
Query:   12 CGRCWTIAHKEEHMAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCK-DALCGECNARIHGSGHRKNHQVETYAKSKKGWQT---------------------VEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETSEKYVQKIXXXXXXXXXXXXXXXXIAYQWANAQKDMK---ADHGTGGGLSLSGLKFGGGDKSKXXXXXEDPRTREQEEGYKKSLLLSRKDKKDMGFEVKLK 701
            C  C+  AH    +  H +    + KE +  GE  CV C +R A   C  C  DALC  C+  +H +G R+ H +   A+ ++GWQ                      VE RTD+E TYYFNA+TGES  +KP+ LML  EL E  + L+ +E + K++ +                 +  +    +KD++   AD       ++ G                D  T      Y+K LLLSR  ++D+G  VKLK
Sbjct: 1078 CDACFARAHPPPTLRHHAFAAPPTAKEPVPRGEAACVACLYRVATVFCRVCGGDALCARCSGALHRTGRRRAHALVACAEQRRGWQQRRGWEVGAPRDACGTYVLWQMVEARTDSEKTYYFNATTGESASEKPESLMLGGELDERRKCLEAREAASKHLTRAERLQQLLEQVVLERDNMQIELQQLKKDLETATADLEAARANAMLGT------------VETDKLT------YRKELLLSRTQRRDLGQSVKLK 1314
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BLAST of mRNA_E_fasciculatus_S2_contig8426.16557.1 vs.
Match: Wbp4 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VNZ7_SYMMI)

HSP 1 Score: 67.0 bits (162), Expect = 3.810e-9
Identity = 40/138 (28.99%), Postives = 60/138 (43.48%), Query Frame = 3 
Query:    6 VYCGRCWTIAHK---EEHMAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARIHGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQDLMLPEELVEHLRFLKYKETS 410
             YC   +   H    +E MA H W  A+  K+ L  G+ +C++C  R A  VCL C D  C EC   +H         V T+   +                   + TGE+TF+KP+DLM P E+     F+ +++  
Sbjct:  108 AYCVEDYVNIHNPETDEDMASHTWSAAELSKDVLKAGQVYCIECKKRAATKVCLTCWDNYCSECFKFVH--------HVGTFGTMRL------------------SVTGETTFEKPRDLMTPSEMEYFDNFVSHRQNE 219
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8426.16557.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized3.130e-14297.93protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WW7.610e-6759.34domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical2.560e-3544.68protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized4.560e-2229.80protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Wbp43.810e-928.99protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8426contigE_fasciculatus_S2_contig8426:2019..5436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size840
Hectar predicted targeting categoryother localisation
Exons7
Cds size675
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8426.16557.1prot_E_fasciculatus_S2_contig8426.16557.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8426 2134..5386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.5836413-UTR-E_fasciculatus_S2_contig8426:2018..21331696842501.5836413-UTR-E_fasciculatus_S2_contig8426:2018..2133Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8426 2019..2133 -
1696842501.6902528-UTR-E_fasciculatus_S2_contig8426:5386..54361696842501.6902528-UTR-E_fasciculatus_S2_contig8426:5386..5436Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8426 5387..5436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842501.603246-CDS-E_fasciculatus_S2_contig8426:2133..22321696842501.603246-CDS-E_fasciculatus_S2_contig8426:2133..2232Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8426 2134..2232 -
1696842501.6160452-CDS-E_fasciculatus_S2_contig8426:2803..29201696842501.6160452-CDS-E_fasciculatus_S2_contig8426:2803..2920Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8426 2804..2920 -
1696842501.6251025-CDS-E_fasciculatus_S2_contig8426:3331..34251696842501.6251025-CDS-E_fasciculatus_S2_contig8426:3331..3425Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8426 3332..3425 -
1696842501.6341405-CDS-E_fasciculatus_S2_contig8426:3924..40731696842501.6341405-CDS-E_fasciculatus_S2_contig8426:3924..4073Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8426 3925..4073 -
1696842501.64467-CDS-E_fasciculatus_S2_contig8426:4445..45441696842501.64467-CDS-E_fasciculatus_S2_contig8426:4445..4544Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8426 4446..4544 -
1696842501.6601434-CDS-E_fasciculatus_S2_contig8426:5000..50831696842501.6601434-CDS-E_fasciculatus_S2_contig8426:5000..5083Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8426 5001..5083 -
1696842501.6772237-CDS-E_fasciculatus_S2_contig8426:5352..53861696842501.6772237-CDS-E_fasciculatus_S2_contig8426:5352..5386Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8426 5353..5386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8426.16557.1

>prot_E_fasciculatus_S2_contig8426.16557.1 ID=prot_E_fasciculatus_S2_contig8426.16557.1|Name=mRNA_E_fasciculatus_S2_contig8426.16557.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
MAGHVWKGADSGKEDLSPGERHCVDCGFRKAKWVCLQCKDALCGECNARI
HGSGHRKNHQVETYAKSKKGWQTVEGRTDNEPTYYFNASTGESTFDKPQD
LMLPEELVEHLRFLKYKETSEKYVQKIEKLQFQLEELMYEKDKIAYQWAN
AQKDMKADHGTGGGLSLSGLKFGGGDKSKKKAAAEDPRTREQEEGYKKSL
LLSRKDKKDMGFEVKLKKETVLDS*
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mRNA from alignment at E_fasciculatus_S2_contig8426:2019..5436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8426.16557.1 ID=mRNA_E_fasciculatus_S2_contig8426.16557.1|Name=mRNA_E_fasciculatus_S2_contig8426.16557.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3418bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8426:2019..5436- (Ectocarpus fasciculatus EfasUO2)
GGCAGGTGTACTGCGGCCGTTGCTGGACGATTGCGCACAAAGAAGAACAC
ATGGCGGGGCATGTGTGGAAGGGCGCGGACTCCGGCAAGTACTATTCCGA
AACGGCAAGATTTTCTGTACGCACACCATGCCCGTGCCAAAGTGCGATTC
CTTGAACGGACGCGTTCGACGGGTTGCTATGTAGCCGCCACGAAGACCCC
CGCAATCCAAAGGAACCGGGTGCTGCATGTGAAAGACCTTAACACGCTGA
CCCGCGAATCCCCGTCTGAGTGCCAAAACCCGATCGATCAAGCGGCCTTT
CTTCTACCCGTAACATTCCTAAAATTTCTCACCTTTTCTCTGGAACCTCG
TAGGTAAGGAAGATCTCAGCCCCGGAGAAAGACACTGCGTCGACTGTGGG
TTCCGAAAGGCCAAGTGGGTGTGCCTTCAGTGCAAGGTGCGCCCCCATCC
TCTCGCCTTCTAGTTGTGAGTATCCCCCCTGTCCCGGGTTGGGAGCGGGG
CAAGGAGAATCTAGGTACATGCGACTGGTTGATGCCCGTCGTGGAGAAGC
CAGGAGGGCCCAACGGCCCGCCTGGTGTTTACGCCCCCCCTGGTGTGTCA
AGACACACTCTGCACCACCCCTGAACATCCCGCTCTGCTTAGCCGTGTGA
CCAAACGTGACGTCACGTTCACTGCGAAGAAGTGGCATCCCACTCGTCGC
CTTCATCGTTCGCGGCAAGACCATCCCGGACTGCTGTTTCATCGAGTTTA
CTCAACGGTCCCTTGCCCGATGTAACCGGCTGCTTGTTTCCAGAGCGATA
AGGCGAATATGCTGACTGCGTTCTTCTTTTAACCCCTCCGGTATATCCCC
TCTCCCCCACACACGGCACTTCCTTTCCTTGCTTCCTTCTAGGATGCTCT
GTGCGGCGAGTGCAACGCTAGAATTCACGGGAGCGGACACCGCAAGAACC
ACCAAGTCGAGACGTACGCCAAGTCCAAGAAAGGCTGGCAGGTACGTGTA
GCGCGCGTTAGGGGGTGTACTGGTTCGTGTGGCAGGTCACGGGCTGGTGT
CTGCCTATGAACAGTTAACTCGTACACTCATACGTACGTACCAGAGTATT
CGGCAGCGATCTTTTGTGTTGTTGTCTTCTGGGCCCGCGGTTGCCGAAAT
ACCGATCTTGTCCAACACAACCCCCTCACACGCCCACCGTACTGCGGCTC
ACCCATGGTATGCGAACGGCCCACCCGGTGCCCAGTGGAGATATGTGAAG
ACTACTAAAGCGCACCCTTTGGCCATGTGAAGGATGACGAGCACGCGTCG
TCGCCCCTCCCCCTTCCCCTCGCCGTTTCGAAACAAAACATCCCCCTCCG
ACGAAAAACGAAGACTGTGGAGGGTAGAACGGACAACGAACCGACCTACT
ACTTCAACGCGTCGACGGGCGAGAGCACCTTCGACAAGCCGCAGGATCTC
ATGCTTCCGGAGGAGCTAGTCGAGCACCTGCGATTCCTCAAGTACAAGGA
GACCAGCGAGAAGTGAGTATGTTCGTAGTGTGGCGCACCTTGCCTGCTAC
TTGCTCTCGCTCGTGATGTCGCTCGACTGCAGGCCAACTAAGGATATCGG
GGAAGGAGGTGTTAGTGTTTGCTTTCATTGTCGGTTCCCTCGACGCTCAG
CTGTTGAGACCTAGTTCTACCTGTGTACCGTTTTGTGTGTAGCTCGATCC
TCGTTCGGACAGTTATTATTGCTCTTTGTTTCCGTATATTACGCCAGTGT
ATCGTAGGAAGCCACACGCCATGTACGCCGCACATGGACTATATGTAGGT
GAAGGACCTTGACCGCCGACAAAAGAGTGACAAGAGAGGCGCACCCTATG
CCTCCCGCGCCCGGTTGAATGCGTGTGCGCGAGGGAGAACAACAAGGGCG
CACGATATGCGCGTGCGCGTGGTTGTCGTTGTTGTAGCCTCCGTTTGTGT
GCTACATATTCCTTCGGTATTAACGATGCCACGTCGGTCGCACACGGGTA
AAAAATTATAGGTATGTGCAGAAGATCGAGAAGCTGCAGTTCCAGCTCGA
GGAGCTCATGTACGAGAAGGACAAGATTGCATACCAGTGGGCCAACGCAC
AAAAGGCAAGGCGAAAAGAGAGACGATTTTTCTTCCGTTGAAGAGGGGGG
GGGGGCAGCAGGGAGGGAGGGAGTACGAAGGGGACGAAAGGAGAACTTTG
TGTCTTCAGAGGGAGGAAAATGAGGAAGCTCTTGTATTTAAACACTCAAA
TCCCCCCCGCACTAACACGATCGGAAAGGCCAGTTTTCGTGGGCACAGGT
GAACAAATATCATCTATATCAACCGAGCGAGGGAGATAACGGAAAGCTTG
CAGAGCGGGAGTGAAAGAGGGCGAACGAGCTCCATCGCGGCTTGCGGCTT
GGGGGTTGCGCCGATTCCCTGTCTGTACCACACGACTCTGCATTTGCGCT
TACACGTTAAATTGAGCCTGATGTCTCCTCGCTGCTGTTGACAAAACTTG
CGCACTACAACAATAGGACATGAAAGCCGACCACGGGACAGGAGGGGGAC
TGTCGCTGAGTGGCCTCAAGTTTGGTGGCGGCGACAAGAGCAAGAAGAAG
GCCGCGGCCGAAGACCCGAGGACTCGAGAACAGGTGATTTACTGTACCAT
ATATCGCAACGCGCAACTATTGAAACTGCATTCCATCCCAAAACGGAATT
GCATGTGAAAGGCGGCATGATATACGTGTTCAGCCTCATCGCCATGACCA
CTGCCTTTATGGATAGAGGTGGTATCGTGTTTAGCTTCGTCCTTCGTTGT
ACCCACTCCGGCGAACACGCAAACAACGTTTTTCTGCCGGATTCACCTGA
CGATAATATGATGTTGAGGATGCTGTCGAGGGCTGGCGGGTTGGAATATA
TGTATGTTATGGAAATATTGGCCCAGGTCCTGCCCACTTGTCAAGAGTAT
CTCAGATGATATTCACAACAGTGTATGTTGTCTGTGCTTCATTTCATTCG
TTGCGATACCATCGCCCCATGTCAAGATCCTTGTTGATAAACGGACGGCA
TACACAGAGACGGATCGGATCTTCATTCGCACGACATCAGGACTCGCGTG
AAAGGTGTTGTATAGCTTGCACTATCGTCATCAAACGTAACCTTGAGGGG
TTTGTGCCGAGACTGCGACGGATTCTTTTCCTTCCCGCTGAACGAATTCC
ACAGGAGGAAGGCTACAAGAAGAGCCTGCTCCTCTCCCGGAAGGACAAGA
AGGACATGGGCTTCGAGGTCAAGCTCAAGAAAGAGACGGTGCTTGACTCC
TAGCCGCAGGTTTATCTTCTCGGTTTATCCTGGCGGTCCCCTAGTGTTGT
TTCTGTTGACAACCACGACGGTGGTGTTGTTGGTCTCCCGAATCTCTGTT
AACGTTGCGGGAGATAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8426:2019..5436-

>mRNA_E_fasciculatus_S2_contig8426.16557.1 ID=mRNA_E_fasciculatus_S2_contig8426.16557.1|Name=mRNA_E_fasciculatus_S2_contig8426.16557.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8426:2019..5436- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGGGCATGTGTGGAAGGGCGCGGACTCCGGTAAGGAAGATCTCAG
CCCCGGAGAAAGACACTGCGTCGACTGTGGGTTCCGAAAGGCCAAGTGGG
TGTGCCTTCAGTGCAAGGATGCTCTGTGCGGCGAGTGCAACGCTAGAATT
CACGGGAGCGGACACCGCAAGAACCACCAAGTCGAGACGTACGCCAAGTC
CAAGAAAGGCTGGCAGACTGTGGAGGGTAGAACGGACAACGAACCGACCT
ACTACTTCAACGCGTCGACGGGCGAGAGCACCTTCGACAAGCCGCAGGAT
CTCATGCTTCCGGAGGAGCTAGTCGAGCACCTGCGATTCCTCAAGTACAA
GGAGACCAGCGAGAAGTATGTGCAGAAGATCGAGAAGCTGCAGTTCCAGC
TCGAGGAGCTCATGTACGAGAAGGACAAGATTGCATACCAGTGGGCCAAC
GCACAAAAGGACATGAAAGCCGACCACGGGACAGGAGGGGGACTGTCGCT
GAGTGGCCTCAAGTTTGGTGGCGGCGACAAGAGCAAGAAGAAGGCCGCGG
CCGAAGACCCGAGGACTCGAGAACAGGAGGAAGGCTACAAGAAGAGCCTG
CTCCTCTCCCGGAAGGACAAGAAGGACATGGGCTTCGAGGTCAAGCTCAA
GAAAGAGACGGTGCTTGACTCCTAG
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