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Homology
BLAST of mRNA_E_fasciculatus_S2_contig8417.16550.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI) HSP 1 Score: 555 bits (1430), Expect = 6.190e-194 Identity = 277/285 (97.19%), Postives = 282/285 (98.95%), Query Frame = 1
Query: 1 ATPAQQVEAAKSATGLAIDGTRALFGGTRQQGLRAGTSRFLQQGWFVAWKAIMTIYCIVWAAWWDRGEDLDIRIYLATWTHMLATAYFVISLISSLLCMAYLSREQPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNLEVVEEEEPAPKT 855
ATPAQQVEAAKSATGLAIDGTRALFGGTRQQGLRAGTSRFLQQGWFV WKA+MTIYCIVWAAWWDRGEDLDIRIYLATWTHMLATAYFVISLISSLLCMAYLSRE+PAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIY S+VPVTSVYVS+TILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDE PGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNLEV+EEEEPAPKT
Sbjct: 2 ATPAQQVEAAKSATGLAIDGTRALFGGTRQQGLRAGTSRFLQQGWFVGWKAVMTIYCIVWAAWWDRGEDLDIRIYLATWTHMLATAYFVISLISSLLCMAYLSREKPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYESDVPVTSVYVSSTILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNLEVIEEEEPAPKT 286
BLAST of mRNA_E_fasciculatus_S2_contig8417.16550.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.380e-37 Identity = 89/241 (36.93%), Postives = 132/241 (54.77%), Query Frame = 1
Query: 100 RAGTSRFLQQGWFVAWKAIMTIYCIVWAAWWDRGEDLDIRIYLATWTHMLATAYFVISLISSLLCMAYLS-REQPAPVEEGKP-------KRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGVPGFTALHVFVYRLRERMY 798
R GTSRFL QG FV +K + +Y + WA +W +D + +L WT T YFV+S +S+ LC ++ PV +G P RP G+ PVP R LQ W CI S++V+S+FW +Y + T + +A +MLLDQFL+A E K +Y F V+YIF+NV +YY +DR+ + + DW+++ AC++ F + G P F +H ++RLRER+Y
Sbjct: 17 RIGTSRFLPQGMFVLYKLGLAVYFLYWAIFWRAVKDYNTGRFLTHWTWYATTTYFVVSALSAFLCWRAIAVTVASGPVRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVY 257
BLAST of mRNA_E_fasciculatus_S2_contig8417.16550.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 2.210e-15 Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query: 349 RPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGVPGFTALHVFVYRLRERMY 798
RP G+ PVP R LQ + W CI S++V+++FW + LLDQFL+A E K +Y F V+Y+F+NV +YY +DR+ + + DW+++ AC++ F + G P F +H+ ++RLRE +Y
Sbjct: 4 RPYDRTGSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGAL---------------------LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVY 132
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1634 |
| Hectar predicted targeting category | signal anchor |
| Exons | 6 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-01_011210.1 |
| Cds size | 1119 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842500.7240264-UTR-E_fasciculatus_S2_contig8417:31..213 | 1696842500.7240264-UTR-E_fasciculatus_S2_contig8417:31..213 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8417 32..213 - |
| 1696842500.7388759-UTR-E_fasciculatus_S2_contig8417:232..409 | 1696842500.7388759-UTR-E_fasciculatus_S2_contig8417:232..409 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8417 233..409 - |
| 1696842500.8128788-UTR-E_fasciculatus_S2_contig8417:4603..4759 | 1696842500.8128788-UTR-E_fasciculatus_S2_contig8417:4603..4759 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8417 4604..4759 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842500.756147-CDS-E_fasciculatus_S2_contig8417:409..905 | 1696842500.756147-CDS-E_fasciculatus_S2_contig8417:409..905 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8417 410..905 - |
| 1696842500.7709916-CDS-E_fasciculatus_S2_contig8417:1338..1580 | 1696842500.7709916-CDS-E_fasciculatus_S2_contig8417:1338..1580 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8417 1339..1580 - |
| 1696842500.7803864-CDS-E_fasciculatus_S2_contig8417:2375..2438 | 1696842500.7803864-CDS-E_fasciculatus_S2_contig8417:2375..2438 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8417 2376..2438 - |
| 1696842500.7895162-CDS-E_fasciculatus_S2_contig8417:3473..3688 | 1696842500.7895162-CDS-E_fasciculatus_S2_contig8417:3473..3688 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8417 3474..3688 - |
| 1696842500.8029325-CDS-E_fasciculatus_S2_contig8417:4500..4603 | 1696842500.8029325-CDS-E_fasciculatus_S2_contig8417:4500..4603 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8417 4501..4603 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8417.16550.1 >prot_E_fasciculatus_S2_contig8417.16550.1 ID=prot_E_fasciculatus_S2_contig8417.16550.1|Name=mRNA_E_fasciculatus_S2_contig8417.16550.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=373bp
MTIYCIVWAAWWDRGEDLDIRIYLATWTHMLATAYFVISLISSLLCMAYL SREQPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLS VFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLGLYFF VVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGVPGFT ALHVFVYRLRERMYTSYKHNLEVVEEEEPAPKTEKEEKKEAKKEAKEEEK KEKKEKKEKKEKKKEEPPPLVVEAPPLAPAAVGGAALGSAAALAAAPPSQ VQQGAYAAPPPQVQQGAYAAPPPQVQQGAYYYPGYPPPPMAYPGPPPTGP PPGSKREKVKKGFEMMNDMGMF* back to topmRNA from alignment at E_fasciculatus_S2_contig8417:32..4759- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig8417.16550.1 ID=mRNA_E_fasciculatus_S2_contig8417.16550.1|Name=mRNA_E_fasciculatus_S2_contig8417.16550.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4728bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8417:32..4759- (Ectocarpus fasciculatus EfasUO2) GCTACGCCGGCCCAGCAGGTGGAGGCTGCAAAGTCGGCGACAGGGTTGGC
AATCGATGGCACGCGAGCGCTCTTCGGCGGCACGAGACAACAAGGGCTTC
GCGCAGGCACGAGCAGGTTCCTGCAGCAAGGCTGGTTCGTAGCGTGGAAG
GCGATCATGACGATCTACTGCATCGTGTGGGCCGCTTGGTGGGACAGAGG
AGAAGACCTCGATATTCGGATATACCTGGCGACTTGGACACATATGCTCG
CGACAGCTTGTGAGTTCCGTGCTTGGCGCCCCCTGTGGAGGTCTGACGTC
GCGCGGACAAATTCTGTTTGCTCGGCTGCTTGCGGCCGGTGCTTTTCGTG
CCTGTCGGAGCAGCGTCAAGCAGGCCGTTCTTTCGTGCTGTGCTCGATTT
TGATCGCAGGACAGCATTGCGCATCGCATCGAACGACAGCAGCAGTCGGC
TCTTTTTGGAAAACGCGTTTGTTTTAGTGTTTGTGTGCAAACGGAATTTT
TTGGCCGCGTTCCTTGAGGCGCTCGTGCTGCTTGTGGGCCAGCATGGATG
ACCTAGGCGCAGTTTTTAAATGTTTGCATTCGTTCTCCGTGGATTCTCAT
GTATGTGCGCGTCGATTTTTTGCTCGGTGGTATCTAAGTGATGTTTACGG
TGCGGTTCCGGCTGGGCTTCATTTATTTTTTTACTTTTTGGGCGTAAACG
CAGCCTGCTGTTGCTACACTATGTACATTTGACTGGTTTTTGATTTTCGA
AAGTCGTGCATGGAGCGTCTTCAAGCAAGGGTTCAAAGTTGAAAGGGTTG
CTCTGCTGGTGTTCTGCGTTCTGCGTGCAAGTGCCTCCGCATTGGGCCAT
CTGCCGTGCCGGTTACACCGTGTTTTTCACGCACAACGCAGCCGCTGTAT
TGTACAGCATTCGTGTCGTCGGAAATAAATGGCGTGTCACGTCATGACTG
CATCCTTGAAGTCTAAAGCGCGTCCTCGCCCCGCCGCCGCCGCCGCCTGC
CTCTCTCGCCGCCGACTTGTTGTGCATACCTCTCTCCGGTGCTCTGCCCC
CCCCCCCCGCCCCTGCGGCAGATTTCGTTATATCGTTGATATCGTCGTTA
CTGTGCATGGCGTACCTTTCTCGAGAACAACCGGCACCGGTCGAGGAAGG
GAAGCCGAAACGACCACCCCCGGTCAAGGGCACGAGGTCGCCGGTGCCCT
GCTACTTCCGCTGGCTTCAGCACATCAGCTGGGTGCTGACTTGCATCAGC
TCGATGGTGGTGCTGTCGGTCTTCTGGATGACAATCGTGAGTTTTTGGAA
GGGGGAAGAGAGGAAAAACATGTGTCCGCTGACTGCACCGTACGGCAGCA
GCCCCGCTATTGCATTTTCGCCAACATAGGAATGTCTCCCACCGAGCCAA
AAACCGATACTCGTTCGTTTGTCTGGCTCCCAGTCCGGCCTGAGTGCTGC
TGCAGTGTGTCCTTGATGCACTGAACACGACGGAAAGCAACCACCACCCA
CCCCGTCTCCTTATTTAGAGTAGACAGCAATCTTGATCATCTGCGGGCCT
ACCTACCCCCACCCGACAACGCCACAGGCACACCCAAGCTACTCTGCTGT
GTGTGAAATCGTGGGCGTGTGGGATGAATACAGTAGATTGATCTCCACTC
TCTCTTTTCGGGTGCAAGCAAGCAAGAAAAGGTCACGCAGATCGTAGAAA
ACGACTGCTGCAGCGACGAAGACTAACTCTTGATTTCGAGTATTGTACAA
CGATTCTGTTTGTTCCAAAATATCTAGATCGTCCGAGGCAAGGCCGAAAA
GATTTATCGAAAATATCGTTCTCACGCACACGAGGAATATTTCACGCGAC
GGAAGTCAGTTCAACTTTTTCCTTGCAGAGGAAACGAGTCTTTCGAAGTT
GCCTCCGGGTCGGACGATAGGTATAATTTTGTTACCCCGGCCATTTGTCC
AGAGCCAGGATGTACACGTGTGTCAAAACAAACAACGCGCGCCATCTTGC
TTGAAGAGCATGAACGTGTACCTTTTTATCACATGTCCACTGCTGCTGTA
CGCACATGAGAGCACAGGAGTTCGAAAATTCTAGCCTTTGTCTACCGCCA
CCTTGCCCACCTTCAAGTTGCCTCCACCCTACTTGTCTTCAAGTCTTCTT
CAAGTTGAATGCGGTCCCTCGTGCCAGACCCATCGTCGGGGGCGGGGGGG
GGGACCAGTACCCCGTATTTGCTTGCATACGTGCCTTATGTGTGTCTCAC
CGCGCCTTCGCACTTCTCATTGGCTCGCCCTGCCCCCCGCCCGAAAATCG
TCATGTTTGTTCGTTCCTCAGTACTCGAGCGAGGTACCGGTGACCAGCGT
CTACGTTAGCGCCACCATCCTGGCGCTCTTGATGGTGAGTGCACCCAGCG
AGGGCAAATAGATGCGGCCTTATAGCGGTACATGCAGGGTGAAGAAGACG
ACGGGTAAGCTGCGCGGAACAAGCACAAAGGCGTACACGATGCCCTCCAG
GCGAAACCGCTCATGTGGGCTGACTGCGGCTGCTGCGATTGGTGGATAAA
TTTTTAGAGACTTGTGTCGTGTGTGTTGCAAGTTAAGTTACAATTCCAGT
GAATGAAGCAATCCCTTTGCGGTGCCTACTGGGCGGAACAAAAAACGGCA
GTGGTTTTCGCTCAGATTCTCCTTTCTCTTTGTGAGACTCTTGCTGGGTG
TATACATGTGAAACAAATCCAGCATGGAGGTTGGTTCTTGGCGAGGGGTC
AGCGTCTAAAACGCAGATCTCGAGACGTGGATTTCTACATGCATTGGCAC
CAGCATTGGCAAAACTCCAGTCCCCGCTTTTCCGAACACGGACACAACGG
TAGAGCATTTTCACCGTCGATTCACCGTCGCCAAGTCCACCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTCCCCCCCCCACCC
CTCCCCGCCCCCGCGCCCCCCCCCCCCCCCCCTCTCTCACCACTCTCCAT
CCTCCNNNNNNNNNNAACACACTCCCCCCGCTTTTTCCAAACGCAAAACC
AAACGTAGTCTATTTTCTCTCCATCTTCCCCCGCCCCAATCCCCCCCCCC
CCCCCCCCCCCTCTCCTTTTTACGGGACCGCCCACTAACTGACTGCGTCG
ACGTCATGCCGGCGGCTGTCCCACCCCAGCTGCTGGATCAGTTCCTGATC
GCGACGGAGATGAAGTTCAAGTACGCCTGGCTTGGCCTCTACTTCTTCGT
GGTGTACATCTTCTACAACGTCATCTACTACTACGAGCACAACGTGGAGG
ATAGAGTGACCTTCGAGGTCTTCGATTGGGACGAGAGCCCAGGCAGGGCC
TGCCTATGGGTGTTCCTGATCCTCGCCTTCGGCGTGCCGGGCTTCACGGC
CCTTCATGTCTTCGTGTACAGGTGTGTTGCTGTCGTGGCGATTCAAAACG
ACCTTTCATGTCTTGGTGTAACAGGTGTGTTGTTGTCCTGTTGTGGCCGT
TAAAAACGGCCCATGATGTCTTGTTGTACGGGTGTGTTGCTGTTCTCTTG
TCGCCGAGAAAACGGCTCTTTCTTATCCTGGTGTACAGGTGTGTTGTTGT
CCTGTTGGGACCAGTTGCCGTATTATGGTGATGCTGTTACGGCCGGGGAA
AGTGGTCGATCATTGTGGCTCGGGGTACGTGTGTCCCTCCTCCCCCACTT
GTCAAACCCGTGCTTGTCCAGCCCCCCCCCGTGTTGAGCCCATGCATATC
CAGCCTAGGACCGCTGCTTTTGTCACCAGCGTTAACCTACCTCGAGCTGT
CTGACAAACTCTCAACGCTCTTTGTTCCTTCCGCCCCAACAACGAATGAA
TCAGACTTCGCGAGCGAATGTACACCTCCTACAAGCACAACCTAGAGGTA
GTCGAGGAGGAGGAACCGGCGCCGAAGACCGAGAAGGAGGAGAAGAAGGA
AGCCAAGAAGGAAGCGAAGGAGGAGGAGAAGAAGGAGAAGAAGGAAAAGA
AGGAGAAGAAGGAGAAGAAGAAGGAGGAGCCGCCGCCGCTAGTGGTAGAG
GCACCGCCGCTGGCGCCTGCAGCTGTTGGCGGGGCGGCGCTAGGCAGTGC
GGCGGCGTTGGCGGCGGCGCCGCCATCCCAGGTGCAGCAGGGGGCGTACG
CGGCGCCGCCACCCCAGGTGCAGCAGGGGGCGTACGCGGCGCCGCCACCC
CAGGTGCAGCAGGGGGCGTACTACTACCCGGGGTACCCCCCTCCCCCCAT
GGCGTACCCGGGCCCCCCGCCAACGGGCCCACCCCCCGGTTCAAAGCGGG
AAAAAGTCAAGAAGGGTTTCGAGATGATGAATGACATGGGCATGTTTTAG
GTTGGCCCACTGCTGGTGCTGCTGGTGCTGCTGCTGTTGAACAGACTAAA
GGGGACTTGCTTTGCTGGCGAGGGAGTGGGAGGGCGCACTATTTTTTACA
AGCAGTATATGAGGAGGAGGGAAGGGGGAACAACGGGGAGGAATGGGGCG
ACATCGTGAGGGGGAGGGAAAAGCGCCGCTATGGCCCATCGTTGAGCGCC
ATTCGTGCCGGCGTGATTTTACGTGCTAAAGGTAAGGCGCTGTCTGTCTT
TGACACCCGTGGCCCCCCATGGGCCACCGGTGATACGCGTCCTCGCCGAT
GCGCATTGCGAAGGGAGGGAGGATGTGGATCGCGATGCTTGCACGTGGCG
GTGTTGGGGGGGGGGCAGTCCAAGGAAG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig8417:32..4759- >mRNA_E_fasciculatus_S2_contig8417.16550.1 ID=mRNA_E_fasciculatus_S2_contig8417.16550.1|Name=mRNA_E_fasciculatus_S2_contig8417.16550.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1119bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8417:32..4759- (Ectocarpus fasciculatus EfasUO2) ATGACGATCTACTGCATCGTGTGGGCCGCTTGGTGGGACAGAGGAGAAGA CCTCGATATTCGGATATACCTGGCGACTTGGACACATATGCTCGCGACAG CTTATTTCGTTATATCGTTGATATCGTCGTTACTGTGCATGGCGTACCTT TCTCGAGAACAACCGGCACCGGTCGAGGAAGGGAAGCCGAAACGACCACC CCCGGTCAAGGGCACGAGGTCGCCGGTGCCCTGCTACTTCCGCTGGCTTC AGCACATCAGCTGGGTGCTGACTTGCATCAGCTCGATGGTGGTGCTGTCG GTCTTCTGGATGACAATCTACTCGAGCGAGGTACCGGTGACCAGCGTCTA CGTTAGCGCCACCATCCTGGCGCTCTTGATGCTGCTGGATCAGTTCCTGA TCGCGACGGAGATGAAGTTCAAGTACGCCTGGCTTGGCCTCTACTTCTTC GTGGTGTACATCTTCTACAACGTCATCTACTACTACGAGCACAACGTGGA GGATAGAGTGACCTTCGAGGTCTTCGATTGGGACGAGAGCCCAGGCAGGG CCTGCCTATGGGTGTTCCTGATCCTCGCCTTCGGCGTGCCGGGCTTCACG GCCCTTCATGTCTTCGTGTACAGACTTCGCGAGCGAATGTACACCTCCTA CAAGCACAACCTAGAGGTAGTCGAGGAGGAGGAACCGGCGCCGAAGACCG AGAAGGAGGAGAAGAAGGAAGCCAAGAAGGAAGCGAAGGAGGAGGAGAAG AAGGAGAAGAAGGAAAAGAAGGAGAAGAAGGAGAAGAAGAAGGAGGAGCC GCCGCCGCTAGTGGTAGAGGCACCGCCGCTGGCGCCTGCAGCTGTTGGCG GGGCGGCGCTAGGCAGTGCGGCGGCGTTGGCGGCGGCGCCGCCATCCCAG GTGCAGCAGGGGGCGTACGCGGCGCCGCCACCCCAGGTGCAGCAGGGGGC GTACGCGGCGCCGCCACCCCAGGTGCAGCAGGGGGCGTACTACTACCCGG GGTACCCCCCTCCCCCCATGGCGTACCCGGGCCCCCCGCCAACGGGCCCA CCCCCCGGTTCAAAGCGGGAAAAAGTCAAGAAGGGTTTCGAGATGATGAA TGACATGGGCATGTTTTAG back to top
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