mRNA_E_fasciculatus_S2_contig8403.16542.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8403.16542.1
Unique NamemRNA_E_fasciculatus_S2_contig8403.16542.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 2.920e-49
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLA 255
            SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLA
Sbjct:   82 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLA 166
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BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.800e-33
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:   70 MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLA 255
            MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLA
Sbjct:    1 MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLA 62
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BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.590e-20
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDL 252
            +G   KR+LY GH P SP QR  +   +  +A  DPERADMVA LGE TG  AL+Q++  ML DP+G E+LR RP ++E +VDL
Sbjct:   15 AGEPCKRILYKGHNPISPSQRVGLTFISAFSAFADPERADMVAALGETTGHRALKQMHHRMLQDPDGIELLRERPQLDEHSVDL 98
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BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y804_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 1.970e-17
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   28 YSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLA 255
            Y GH PTSPLQ+   AG + + A+ +PERADMV  LGEVTGR+ALE+L   + A  EGRE+L  RP+++ A  D A
Sbjct:   42 YRGHLPTSPLQKAFAAGASALQAIANPERADMVGLLGEVTGRVALERLRDELRASAEGREVLALRPIVSTADADAA 117
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BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WU27_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.050e-16
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   16 KRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDL 252
            +RV+Y  H PT+PLQ+  ++  + VT   +PER DM+A LGEVTGR AL Q++  M ADP G  IL  +PVI    +D+
Sbjct:    2 RRVMYDSHMPTTPLQKLLLSVASAVTVFANPERGDMLAALGEVTGRDALRQIHARMCADPVGARILAEKPVIRNEQIDM 80
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BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GUR3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.200e-16
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDL 252
            +G   +RV+Y+ H PT+PLQ+  ++  + +T   +PER DM+A LGEVTGR AL++++  M ADP G  IL  +PVI    +D+
Sbjct:   29 TGEPTRRVMYNSHMPTTPLQKLVLSVTSALTVFANPERGDMLAALGEVTGRDALQRIHARMCADPVGARILAEKPVIRNEQIDM 112
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2E7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.520e-16
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDL 252
            +G   K VLY  H PTSPLQ+ A+A  +  T   DPER DM+A LG+VTG +AL Q++  M +DP GR+IL  +P      VD+
Sbjct:   34 AGLPTKHVLYKAHVPTSPLQKIAVAVGSAFTVFTDPERGDMLAALGDVTGAVALRQMHLKMYSDPVGRQILAEKPRFRSHLVDI 117
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BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE84_PYTIN)

HSP 1 Score: 80.9 bits (198), Expect = 1.780e-16
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDL 252
            +G  A+RVLY  H PTSP+Q+ A++  +  T L +PER DM+ATLGEVTGR AL +++  M +DP G  IL  RP I    +D+
Sbjct:   44 AGEPARRVLYPTHTPTSPVQKIALSFVSAFTVLGNPERGDMLATLGEVTGRQALLRMHARMCSDPVGARILAERPSIRSDRIDI 127
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4, mitochondrial n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JDW1_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 3.220e-16
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   25 LYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDL 252
            LY GH P SPLQRT +A  +  TAL +P R DMVA LGE T  + L ++   ML DPEGR ILR RPVI   T+ L
Sbjct:   51 LYDGHIPISPLQRTILAVGSAFTALANPLRGDMVAALGETTSGIFLNRIRDQMLQDPEGRRILRERPVITSETMQL 126
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Match: Ubiquinone (biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAS5_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 5.030e-16
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDL 252
            +G   KRVLY  H PTSP+Q+  ++ ++ ++   DPER DM+A LGEVTGR AL Q++  M +DP G  IL  RP I    +D+
Sbjct:   45 AGEPQKRVLYDTHMPTSPVQKVFLSVFSALSVFTDPERGDMLALLGEVTGRDALRQVHAKMCSDPVGVRILTERPSIRSDQIDM 128
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8403.16542.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ubiquinone2.920e-49100.00biosynthesis protein COQ4 homolog, mitochondrial n... [more]
Uncharacterized1.800e-33100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ubiquinone1.590e-2052.38biosynthesis protein COQ4 homolog, mitochondrial n... [more]
Ubiquinone1.970e-1753.95biosynthesis protein COQ4 homolog, mitochondrial n... [more]
Ubiquinone1.050e-1648.10biosynthesis protein COQ4 homolog, mitochondrial n... [more]
Ubiquinone1.200e-1644.05biosynthesis protein COQ4 homolog, mitochondrial n... [more]
Ubiquinone1.520e-1647.62biosynthesis protein COQ4 homolog, mitochondrial n... [more]
Ubiquinone1.780e-1648.81biosynthesis protein COQ4 homolog, mitochondrial n... [more]
Ubiquinone3.220e-1655.26biosynthesis protein COQ4, mitochondrial n=1 Tax=L... [more]
Ubiquinone5.030e-1646.43biosynthesis protein COQ4 homolog, mitochondrial n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8403contigE_fasciculatus_S2_contig8403:5249..5951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score168.7
Seed ortholog evalue1.2e-39
Seed eggNOG ortholog2880.D7FK62
Preferred nameCOQ4
Model size259
KEGG koko:K18586
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016020,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Exons2
EggNOG free text desc.ubiquinone biosynthetic process
EggNOG OGsCOG5031@1,KOG3244@2759
Ec32 ortholog descriptionUbiquinone biosynthesis protein Coq4
Ec32 orthologEc-04_005680.1
Cds size255
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842499.962045-CDS-E_fasciculatus_S2_contig8403:5248..54241696842499.962045-CDS-E_fasciculatus_S2_contig8403:5248..5424Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8403 5249..5424 +
1696842499.9774132-CDS-E_fasciculatus_S2_contig8403:5870..59491696842499.9774132-CDS-E_fasciculatus_S2_contig8403:5870..5949Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8403 5871..5949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8403.16542.1prot_E_fasciculatus_S2_contig8403.16542.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8403 5249..5949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8403.16542.1

>prot_E_fasciculatus_S2_contig8403.16542.1 ID=prot_E_fasciculatus_S2_contig8403.16542.1|Name=mRNA_E_fasciculatus_S2_contig8403.16542.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=85bp
SGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTG
RLALEQLYRSMLADPEGREILRARPVINEATVDLA
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mRNA from alignment at E_fasciculatus_S2_contig8403:5249..5951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8403.16542.1 ID=mRNA_E_fasciculatus_S2_contig8403.16542.1|Name=mRNA_E_fasciculatus_S2_contig8403.16542.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=703bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8403:5249..5951+ (Ectocarpus fasciculatus EfasUO2)
TCGGGGCCGGCGGCCAAGAGGGTGTTGTACAGCGGGCACCAGCCTACGTC
CCCCCTGCAGCGGACGGCTATGGCCGGCTGGGCGACGGTGACCGCGCTCA
TGGACCCCGAGCGGGCGGACATGGTGGCGACCCTGGGGGAGGTGACGGGC
AGGCTGGCCCTCGAGCAGCTGTACAGGTGTGGAGGGGAAATACGTTGAAA
CCAACACAGTCTGTCCCCACAGTGTCTGCCTCCTGTTGAGGGCTCTCCCC
TATTGTAGTTCGATTCTCTTTGCGACAACGCTCTCTACACATTTAGTCTT
GGCAGAGCTCCGTCGTCTTTCCTCCGCTCTCCTTCCATGGAAAATGGTTG
AGATATGTTGCGTCCTATTGCGTCCCTCAAACCAAAAACCAAAAAACACC
CAATACCCAAACCAAAGCCACCCAACAATCAATTGTTTTCTTTGAAGTGA
AGACAAAAAAAAAAAAGAGAAATGCCGAAAGTGGTAAAGCAGGTTTTGCA
CGCAGAAGTGAGCGGTCGCCGTTGTTGACTGCAATCATCCAGAGCGCCCC
CGTCATCCATCACACACCCGAGGCTGCTTCTCCCTCACACCGCGGCGGCC
ATCCTACTGCCGACCGTCGCAGGTCCATGCTGGCTGACCCGGAAGGGCGG
GAGATCCTCCGGGCGAGGCCGGTTATCAACGAAGCCACGGTTGACCTGGC
CGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8403:5249..5951+

>mRNA_E_fasciculatus_S2_contig8403.16542.1 ID=mRNA_E_fasciculatus_S2_contig8403.16542.1|Name=mRNA_E_fasciculatus_S2_contig8403.16542.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=255bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8403:5249..5951+ (Ectocarpus fasciculatus EfasUO2)
TCGGGGCCGGCGGCCAAGAGGGTGTTGTACAGCGGGCACCAGCCTACGTC
CCCCCTGCAGCGGACGGCTATGGCCGGCTGGGCGACGGTGACCGCGCTCA
TGGACCCCGAGCGGGCGGACATGGTGGCGACCCTGGGGGAGGTGACGGGC
AGGCTGGCCCTCGAGCAGCTGTACAGGTCCATGCTGGCTGACCCGGAAGG
GCGGGAGATCCTCCGGGCGAGGCCGGTTATCAACGAAGCCACGGTTGACC
TGGCC
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