mRNA_E_fasciculatus_S2_contig8402.16540.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8402.16540.1
Unique NamemRNA_E_fasciculatus_S2_contig8402.16540.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Heat (shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI3_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.460e-43
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWG PD
Sbjct:    1 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGTPD 79
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BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Heat (shock protein 70 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK58_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.150e-31
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MS +GID GND+CVIG+A RGGIDIILNE+SNR+ P++VSFQGKQR MGE A SI+RSNFKNTAR++KR+VGR W  P+
Sbjct:    1 MSSVGIDLGNDSCVIGLAGRGGIDIILNESSNRRTPSMVSFQGKQRFMGEAALSISRSNFKNTARDLKRMVGRRWEEPE 79
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BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDU3_HYAAE)

HSP 1 Score: 113 bits (283), Expect = 2.600e-30
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIG+DFGN  CVIG A RGGIDIILNENSNRKNP +V  QGKQR +GE A S+AR ++KNTA +VKRL+GR +  P+
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMVCVQGKQRFIGEAAVSMARMHYKNTATDVKRLIGRKFKHPE 79
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BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Aste57867_15151 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2R3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.660e-29
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIGIDFGN  CV+  A RGGIDIILNENSNRKNP +V   GKQR +GE A S+ARSNFKNTA EVKRL+GR + APD
Sbjct:    1 MSVIGIDFGNVDCVVSQAKRGGIDIILNENSNRKNPNMVCMAGKQRYIGEAALSMARSNFKNTATEVKRLIGRKFSAPD 79
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BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV72_GLOUD)

HSP 1 Score: 116 bits (290), Expect = 2.000e-28
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIG+DFGN  CVIG A RGGIDIILNENSNRKNP +V  QGKQR +GE A S+AR++FKNTA +VKRL+GR +  P+
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMVCVQGKQRFIGEAAVSVARAHFKNTATDVKRLIGRKFKHPE 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XS42_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.000e-28
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIGIDFGN  CV+  A RGGIDIILNENSNRKNP +V   GKQR +GE A S+AR+N+KNTA +VKRL+GR + APD
Sbjct:    1 MSVIGIDFGNVECVVAQAKRGGIDIILNENSNRKNPNMVCMTGKQRYIGEAAVSMARTNYKNTATDVKRLIGRKFSAPD 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U593_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.010e-28
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIGIDFGN  CV+  A RGGIDIILNENSNRKNP +V   GKQR +GE A S+AR+N+KNTA +VKRL+GR + APD
Sbjct:    1 MSVIGIDFGNVECVVAQAKRGGIDIILNENSNRKNPNMVCMAGKQRYIGEAAVSMARTNYKNTATDVKRLIGRKFSAPD 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDW0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.010e-28
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIG+DFGN  CVIG A RGGIDIILNENSNRKNP +V  QGKQR +GE A S+AR++FKNTA +VKRL+GR +  P+
Sbjct:    1 MSVIGVDFGNVDCVIGQAKRGGIDIILNENSNRKNPNMVCVQGKQRFIGEAAVSVARAHFKNTATDVKRLIGRKFRHPE 79
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AZX7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.030e-28
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIGIDFGN  CV+  A RGGIDIILNENSNRKNP +V   GKQR +GE A S+AR+N+KNTA +VKRL+GR + APD
Sbjct:  559 MSVIGIDFGNVECVVAQAKRGGIDIILNENSNRKNPNMVCMAGKQRYIGEAAVSMARTNYKNTATDVKRLIGRKFSAPD 637
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Match: Uncharacterized (protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418D1Y3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.040e-28
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:   12 MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGEGAASIARSNFKNTAREVKRLVGRVWGAPD 248
            MSVIGIDFGN  CV+  A RGGIDIILNENSNRKNP +V   GKQR +GE A S+AR+N+KNTA +VKRL+GR + APD
Sbjct:  565 MSVIGIDFGNVECVVAQAKRGGIDIILNENSNRKNPNMVCMAGKQRYIGEAAVSMARTNYKNTATDVKRLIGRKFSAPD 643
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8402.16540.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Heat1.460e-4398.73shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
Heat2.150e-3172.15shock protein 70 n=1 Tax=Tribonema minus TaxID=303... [more]
Uncharacterized2.600e-3068.35protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Aste57867_151511.660e-2973.42protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized2.000e-2869.62protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized2.000e-2869.62protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized2.010e-2869.62protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A... [more]
Uncharacterized2.010e-2869.62protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized2.030e-2869.62protein (Fragment) n=3 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized2.040e-2869.62protein n=8 Tax=Aphanomyces astaci TaxID=112090 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8402contigE_fasciculatus_S2_contig8402:1571..2473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score115.5
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog157072.XP_008869434.1
Preferred nameHSPA4L
Model size248
KEGG koko:K09485,ko:K09489
KEGG TC1.A.33
KEGG Pathwayko04141,ko04530,ko04612,map04141,map04530,map04612
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000774,GO:0001085,GO:0001655,GO:0001822,GO:0001932,GO:0001933,GO:0001934,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005811,GO:0005829,GO:0005844,GO:0005886,GO:0005911,GO:0006355,GO:0006357,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006897,GO:0006898,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007006,GO:0007275,GO:0007568,GO:0008092,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008340,GO:0009266,GO:0009405,GO:0009408,GO:0009506,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010259,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0015031,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017038,GO:0017076,GO:0019219,GO:0019220,GO:0019222,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0023051,GO:0023057,GO:0030054,GO:0030139,GO:0030155,GO:0030234,GO:0030312,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032092,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032872,GO:0032873,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033365,GO:0033613,GO:0033674,GO:0034613,GO:0034622,GO:0035639,GO:0035690,GO:0035966,GO:0036094,GO:0042026,GO:0042221,GO:0042277,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042886,GO:0042981,GO:0043014,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043393,GO:0043408,GO:0043409,GO:0043523,GO:0043524,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045040,GO:0045184,GO:0045343,GO:0045345,GO:0045765,GO:0045766,GO:0045785,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046634,GO:0046635,GO:0046686,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051094,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051131,GO:0051133,GO:0051135,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051251,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051493,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055044,GO:0060205,GO:0060255,GO:0060341,GO:0060548,GO:0060589,GO:0060590,GO:0061024,GO:0061077,GO:0061097,GO:0061098,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070062,GO:0070201,GO:0070302,GO:0070303,GO:0070507,GO:0070585,GO:0070727,GO:0070887,GO:0071682,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090151,GO:0097159,GO:0097367,GO:0097708,GO:0098657,GO:0098772,GO:1900034,GO:1900407,GO:1900408,GO:1900744,GO:1901031,GO:1901032,GO:1901214,GO:1901215,GO:1901265,GO:1901298,GO:1901299,GO:1901342,GO:1901363,GO:1902175,GO:1902176,GO:1902531,GO:1902532,GO:1902680,GO:1902882,GO:1902883,GO:1903037,GO:1903039,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903506,GO:1903508,GO:1903561,GO:1903747,GO:1903748,GO:1903750,GO:1903751,GO:1903753,GO:1903827,GO:1903828,GO:1904018,GO:1904950,GO:1990904,GO:2000026,GO:2000112,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Exons2
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0103@2759
Cds size237
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842499.9049685-CDS-E_fasciculatus_S2_contig8402:1570..16931696842499.9049685-CDS-E_fasciculatus_S2_contig8402:1570..1693Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8402 1571..1693 -
1696842499.9212031-CDS-E_fasciculatus_S2_contig8402:2348..24621696842499.9212031-CDS-E_fasciculatus_S2_contig8402:2348..2462Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8402 2349..2462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842499.9320447-UTR-E_fasciculatus_S2_contig8402:2462..24731696842499.9320447-UTR-E_fasciculatus_S2_contig8402:2462..2473Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8402 2463..2473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8402.16540.1prot_E_fasciculatus_S2_contig8402.16540.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8402 1571..2462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8402.16540.1

>prot_E_fasciculatus_S2_contig8402.16540.1 ID=prot_E_fasciculatus_S2_contig8402.16540.1|Name=mRNA_E_fasciculatus_S2_contig8402.16540.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=79bp
MSVIGIDFGNDTCVIGMAARGGIDIILNENSNRKNPTLVSFQGKQRLMGE
GAASIARSNFKNTAREVKRLVGRVWGAPD
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mRNA from alignment at E_fasciculatus_S2_contig8402:1571..2473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8402.16540.1 ID=mRNA_E_fasciculatus_S2_contig8402.16540.1|Name=mRNA_E_fasciculatus_S2_contig8402.16540.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=903bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8402:1571..2473- (Ectocarpus fasciculatus EfasUO2)
GGCAGAGCACGATGTCCGTGATCGGGATAGACTTCGGGAATGATACCTGC
GTGATCGGGATGGCTGCCCGGGGCGGCATCGACATCATCCTCAACGAGAA
TTCGAACCGAAAGAACCCGACCCTGGTGAGCTACTACGATATGCATACGT
CAGTCGCGGCATTTCATACGTCATTCGCGTCATTTTATACGTCATTCACG
TCATTTCAGGCAGACGGGCATGTCAAGAGGTGATATGGATGTGTGTGAAG
GAGAGGACAAGTCAGTCAGGCAGATAGACATGTCGAGAAGCGATGTCTTT
TCGTGTTATAGCAAACAGGAGAGAAGTCACCCAGGCGAATCAGTGAAGTC
AGTCAGACAGACATGTCAAGACAAGGGATGTCCATGTTTGTACAGCAACC
AGAGAGGAACAGGCTATCAATCCATCAAGCTAATCGGTTAGCCAGACTTG
TCAAGAGGATGTGTGTAGAGGAGAGATTCCGACCATCAAAAATCAGTCAT
GCTAGTCCGACAGACATGTAAAGAGGCGATGCCTGTAAGGCAGCAGGAGT
AACGTTAGGCATGTCAAGAGGCGTTTCGACTGTATCCCGACAGGAGTAGC
AGTCTGATATGTCCAGAGGCGATGCAGGTGCTTGGAAAGCAACAGGAGAG
AGAGAGTCAGAGACACGAGAAGACGACGTCGACTGACGAAAGTCAGTCCC
GATCGTTGTGCAACGCTTTTTTCCCAACAGCAGGATGTGTGGCATGACGT
CCTTTTTTATTTTTTTTTGGCAAATGGCAGGTCTCTTTCCAGGGAAAGCA
GCGGCTCATGGGCGAGGGCGCCGCGAGCATCGCCCGCAGCAACTTTAAGA
ACACCGCGCGGGAGGTGAAGCGGCTTGTGGGCCGCGTGTGGGGCGCTCCG
GAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8402:1571..2473-

>mRNA_E_fasciculatus_S2_contig8402.16540.1 ID=mRNA_E_fasciculatus_S2_contig8402.16540.1|Name=mRNA_E_fasciculatus_S2_contig8402.16540.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=237bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8402:1571..2473- (Ectocarpus fasciculatus EfasUO2)
ATGTCCGTGATCGGGATAGACTTCGGGAATGATACCTGCGTGATCGGGAT
GGCTGCCCGGGGCGGCATCGACATCATCCTCAACGAGAATTCGAACCGAA
AGAACCCGACCCTGGTCTCTTTCCAGGGAAAGCAGCGGCTCATGGGCGAG
GGCGCCGCGAGCATCGCCCGCAGCAACTTTAAGAACACCGCGCGGGAGGT
GAAGCGGCTTGTGGGCCGCGTGTGGGGCGCTCCGGAC
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