mRNA_E_fasciculatus_S2_contig84.16534.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG63_9PHAE) HSP 1 Score: 512 bits (1319), Expect = 3.540e-172 Identity = 263/283 (92.93%), Postives = 270/283 (95.41%), Query Frame = 1
Query: 76 MVVRPHSPAALVCGLLNVCAAFVPGTT-GGMGLIPIAASAPCRPA-VSTTGSGGHPGHRRYIAVTMASSVAPAPRTKAEKTSEHFKLKDGGMVEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLA 918
MV+RPHSP ALVCGLLNVCAAFVP T GGMGL PIAASAPCRPA VSTT S GHP HRR +AVTMASSVAPAPRTKAEKTSE FKLKDGG+VEFGSGQRVEA+ISGAPLESMQ YISDPSRIV+ACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRL GDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYR+WSRDQ+LA
Sbjct: 1 MVLRPHSPVALVCGLLNVCAAFVPSNTAGGMGLTPIAASAPCRPAAVSTTESAGHPDHRRRMAVTMASSVAPAPRTKAEKTSEQFKLKDGGIVEFGSGQRVEATISGAPLESMQAYISDPSRIVYACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYREWSRDQRLA 283
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW2_ECTSI) HSP 1 Score: 423 bits (1088), Expect = 1.180e-138 Identity = 214/221 (96.83%), Postives = 218/221 (98.64%), Query Frame = 1
Query: 253 IAVTMASSVAPAPRTKAEKTSEHFKLKDGGMVEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKL 915
+AVTMASSVAPAPRTKAEKTSE FKLKDGGMVEFGSGQRVEASISGAPLESM EYIS+PSRIV+ACWEHKDI DMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEG+LRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKL
Sbjct: 1 MAVTMASSVAPAPRTKAEKTSEQFKLKDGGMVEFGSGQRVEASISGAPLESMLEYISEPSRIVYACWEHKDIMDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGKLRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKL 221
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0S3_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.170e-22 Identity = 64/218 (29.36%), Postives = 112/218 (51.38%), Query Frame = 1
Query: 295 TKAEKTSEHFKLKDGGMVEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTA------EDGT-------IQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKN---TRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWS 900
++A E F+L G M EFG+ VE + P + P R++ A W+ + + VFR+ + SF+ +S+ S+D++L E+G + +S+G+S++ + ++LGQ F ++ +++ G+LR V R K RL G+V G++P LLS TP P+++SAA+ IN +++ Y FV +A D+ +WS
Sbjct: 64 SEASSPKEFFRLARGKM-EFGTVDEVELLLWDEPALIRRYLTESPDRVLLATWDAELVDRRARDVFRLTTKPMSFVHLSLQPSIDVRLTAIPPEAGREEGAPESGGHLLSVESLGHSMNGLEQILGQRFAESLRIDVTGKLRAH--VPPARPGDSKGRGPVRLVGEVVFVTSGQLPSLLSLTPRPVLESAAIAINRRIMSYAKGKFVKNLAKDFNRWS 278
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A252DY18_9NOSO) HSP 1 Score: 92.0 bits (227), Expect = 1.830e-17 Identity = 56/185 (30.27%), Postives = 96/185 (51.89%), Query Frame = 1
Query: 346 VEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKW 897
+ F + Q VE ++ P+ +Q Y+ P R+V A + I + + VFR+ R SF+S+SI +VD+++W +GTI +SVG ++LG E+++ F L L+G L + T TRL G + + ++P S TP+P++++ G+ VL V + + DYR+W
Sbjct: 3 IRFTASQSVEIAVPKQPIP-IQHYLRQPQRLVNALVDTNRIQQLSEEVFRLKMRPLSFMSLSIQPTVDMRVWAESNGTINLQSVG------CEILGFEYINQRFALNLKGNLSPSQHST--------GTRLQGKADLEVQVELPPPFSFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRRW 172
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: DUF1997 (domain-containing protein n=1 Tax=unclassified Nostoc TaxID=2593658 RepID=UPI0016845B08) HSP 1 Score: 90.1 bits (222), Expect = 8.480e-17 Identity = 57/191 (29.84%), Postives = 98/191 (51.31%), Query Frame = 1
Query: 352 FGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLAT 921
F + Q V+ ++ P+ +Q Y+ P R+V A ++ I + + VFR+ R SF+S+SI +VD+++WT +GTI +S+ ++LG E+++ F L L+G L + S TRL G+ + + +P LS TP+P++++A + VL V + + DYR W Q T
Sbjct: 5 FTASQSVKIAVPHQPIP-IQHYLRQPQRLVNALVDNSRIQQLSEEVFRLKMRPLSFMSLSIQPTVDMRVWTESNGTIYVRSLA------CEILGVEYINQRFSLNLKGYLSPHQ--------SSSGTRLEGNADLEVQVDLPPPLSFTPKPILEAAGNSLLKSVLVTVKQRLLHHLLADYRHWVASQMKET 180
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: DUF1997 (domain-containing protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A8J6ZWI5_9CYAN) HSP 1 Score: 88.6 bits (218), Expect = 2.900e-16 Identity = 55/185 (29.73%), Postives = 95/185 (51.35%), Query Frame = 1
Query: 346 VEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKW 897
+F + Q VE ++ P+ +Q Y+ P R+V A ++ I + + VFR+ R +F+S+SI +VD+++W +G I +SVG ++LG E+V+ F L L+G L ++ T TRL G + + +P S TP+P++++ G+ VL V + + DYR W
Sbjct: 3 TKFTASQSVEIAVPQQPIP-IQHYLRQPPRLVRALVDNSRIQQLSEEVFRLKMRPMTFMSLSIQPTVDMRVWAESNGIIYLRSVG------CEILGLEYVNQRFALNLKGYLSAKDLST--------GTRLQGRADLEVQVDLPPPFSFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRHW 172
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=1 Tax=Calothrix elsteri CCALA 953 TaxID=987040 RepID=A0A2A2TP43_9CYAN) HSP 1 Score: 88.6 bits (218), Expect = 3.270e-16 Identity = 57/187 (30.48%), Postives = 97/187 (51.87%), Query Frame = 1
Query: 352 FGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQ 909
F + Q VE ++ P+ +Q Y+ P R+V+A E I + + VFR+ R +F+SISI +VD+++W G I+ +S+ ++LG E+++ F L LEG L +EE LS+ N + D+ VTI +P TP+ ++++A G+ VL + + + DY +W Q
Sbjct: 5 FNALQSVEMTVPEQPIH-IQHYLRQPQRLVYALVETDRIKQLSEEVFRLKMRPLTFISISIQPTVDMRVWAEPSGVIRLQSIA------CEILGFEYINQRFSLNLEGYLSLEEN------LSVTNLKGRADLQVTID--LPAPFCFTPKAILETAGNGLLKSVLLTIKQRLLYQLLADYSRWVESQ 176
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=3 Tax=Nostocaceae TaxID=1162 RepID=A0A1Z4IE66_9NOSO) HSP 1 Score: 88.2 bits (217), Expect = 3.940e-16 Identity = 54/186 (29.03%), Postives = 95/186 (51.08%), Query Frame = 1
Query: 343 MVEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKW 897
+ +F + Q VE ++ P+ +Q Y+ P R+V A +HK I + + +FR+ R SF+S+SI +VD+++W +GTI +SV ++ G E+++ F L L G L ++ T TRL G + + +P S TP+P++++ + VL V + + DYR+W
Sbjct: 2 LTKFTASQPVEIAVPDQPIP-IQHYLRQPQRLVNALVDHKRIQQLSEEIFRLKMRPLSFMSLSIQPTVDMRVWAESNGTIYLRSVA------CEIRGFEYINQRFSLNLRGYLSPYQSNT--------GTRLEGRADLEVQVDLPPPFSLTPKPILETTGNSLLKSVLLTVKQRLLHHLLADYRQW 172
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=1 Tax=Calothrix sp. 336/3 TaxID=1337936 RepID=A0A0T7BVG2_9CYAN) HSP 1 Score: 88.2 bits (217), Expect = 4.040e-16 Identity = 54/190 (28.42%), Postives = 97/190 (51.05%), Query Frame = 1
Query: 343 MVEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFF-LELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQ 909
+ +F + Q VE ++ P+ +Q Y+ P R+V + + I + D +FR+ R +FLS++I +VD+++W A + TI +S+ ++LG E+++ F L L+G L ET + TRL G + + +P S TP+P++++A G+ VL + + + DYR W Q
Sbjct: 2 LTQFIASQSVEITVPRYPIP-IQHYLRQPQRLVHSLVDSTRIQQLSDEIFRLKMRPLNFLSLTIQPTVDMRVWAANNSTIYLRSLA------CEILGIEYINQRFDLNLKGYLSPYETG--------QETRLKGQADLQVQVDLPPPFSLTPKPIIETAGNGLLKSVLLTIKQRLLHQLLNDYRFWVNSQ 176
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Match: Uncharacterized (protein n=3 Tax=Calotrichaceae TaxID=2661849 RepID=A0A1Z4K5Z5_9CYAN) HSP 1 Score: 86.7 bits (213), Expect = 1.350e-15 Identity = 57/206 (27.67%), Postives = 102/206 (49.51%), Query Frame = 1
Query: 346 VEFGSGQRVEASISGAPLESMQEYISDPSRIVFACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDT-FFLELEGELRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQKLAT*KRAALQERTARV 960
+F + Q VE + P+ +Q Y+ P R+V+A ++ I + + VFR+ R SF+S+SI +VD+++W GT+ +SVG ++LG ++++ F L L+G L + T+ T L G + + ++P TP+P++++ G+ VL V + + DYR+W Q K L +RT +
Sbjct: 3 TQFTASQSVEIVVPKQPIP-IQHYLRQPQRLVYALVDNNRIQQISEEVFRLKMRPLSFMSLSIQPTVDMRVWADSQGTLYLRSVG------CEILGVDYINQRFALNLKGYLSPLQHNTE--------TYLQGKADLAVQVELPPPFCFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRRWVSVQT----KEQGLSDRTGEL 189 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig84.16534.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig84.16534.1 >prot_E_fasciculatus_S2_contig84.16534.1 ID=prot_E_fasciculatus_S2_contig84.16534.1|Name=mRNA_E_fasciculatus_S2_contig84.16534.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=283bp MVVRPHSPAALVCGLLNVCAAFVPGTTGGMGLIPIAASAPCRPAVSTTGSback to top mRNA from alignment at E_fasciculatus_S2_contig84:23131..28900- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig84.16534.1 ID=mRNA_E_fasciculatus_S2_contig84.16534.1|Name=mRNA_E_fasciculatus_S2_contig84.16534.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5770bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig84:23131..28900- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig84:23131..28900- >mRNA_E_fasciculatus_S2_contig84.16534.1 ID=mRNA_E_fasciculatus_S2_contig84.16534.1|Name=mRNA_E_fasciculatus_S2_contig84.16534.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig84:23131..28900- (Ectocarpus fasciculatus EfasUO2)back to top |